3I55E

Co-crystal structure of mycalamide a bound to the large ribosomal subunit
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 23S ribosomal RNA
total genus 40
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2009-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3i55E02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3i55E01
5GAHG 1VQ7E 4WFAE 4WFNE 3PIOE 1YJWE 1VQ8E 5DM6E 1M1KG 3CCJE 1YI2E 1VQ5E 2CQLA 1K73G 3I55E 5HL7E 3CCME 2QEXE 1QVGE 1VQ6E 2QA4E 3CCQE 3CCVE 1Q86G 5JVGE 1YITE 3OW2E 5MLCH 2OTLE 3CC7E 3CC2E 5JVHE 1KD1G 1VQ4E 1W2BE 4WF9E 3CCUE 1YJNE 3CMEE 1RL6A 3CF5E 1VQOE 4IOCE 1K8AG 3CPWE 1KC8G 5H1SI 1YHQE 1NJIG 1VQ9E 3CC4E 1JJ2E 3DLLE 1M90G 3J7ZG 3CCSE 4UY8G 4WFBE 3CXCE 5GADG 3G71E 5GAGG 1VQME 1QVFE 3PIPE 5DM7E 5GAEG 4IO9E 1VQLE 1N8RG 1Q82G 3G6EE 1Q7YG 3CCRE 2ZJRE 3CMAE 1VQPE 2OTJE 1YJ9E 2ZJPE 3CCEE 3I56E 1YIJE 1VQNE 5AN9B 4IOAE 1S72E 1KQSE 4U67E 3G4SE 3CD6E 1VQKE 2ZJQE 1Q81G 4WCEE 3CCLE 1K9MG
chains in the Genus database with same CATH superfamily
3CKFA 5GAHG 1VQ7E 2I5VO 4WFAE 4WFNE 3PIOE 1FJ1E 1YJWE 1VQ8E 5DM6E 1M1KG 3CCJE 1YI2E 1VQ5E 2CQLA 1K73G 3I55E 5HL7E 3CCME 2QEXE 1QVGE 1VQ6E 2QA4E 3CCQE 3CCVE 1Q86G 5JVGE 1YITE 2HKDA 3OW2E 5MLCH 2OTLE 3CC7E 3IG9A 3CC2E 5JVHE 1KD1G 1VQ4E 1W2BE 4WF9E 3CCUE 1RJLC 2OY8A 3IGEA 1YJNE 3CMEE 5B2AO 1RL6A 3CF5E 2G8CO 1VQOE 1P4PA 2OL6O 4IOCE 2AF5A 1K8AG 2OL7A 3CPWE 1KC8G 5H1SI 5B10O 1YHQE 5B3MO 2FKJA 1NJIG 1OSPO 1VQ9E 2OL8O 3CC4E 1JJ2E 3DLLE 1M90G 3J7ZG 3CCSE 4UY8G 4WFBE 3CXCE 5GADG 3G71E 5GAGG 2OY7A 1VQME 2I5ZO 1QVFE 3PIPE 3CKGA 2FKGA 5DM7E 5GAEG 4IO9E 1VQLE 1N8RG 1Q82G 3G6EE 1Q7YG 3CCRE 2OY5O 2ZJRE 3CMAE 1VQPE 5B11O 2OTJE 1YJ9E 2OYBO 2ZJPE 3CCEE 3I56E 3EC5A 1YIJE 1VQNE 3AUMO 5AN9B 4IOAE 1S72E 1KQSE 4U67E 3G4SE 3CD6E 1VQKE 2ZJQE 1Q81G 2PI3O 4WCEE 3CCLE 2OY1O 1K9MG
chains in the Genus database with same CATH topology
5GAHG 1VQ7E 4WFAE 4WFNE 3PIOE 1YJWE 1VQ8E 5DM6E 1M1KG 3CCJE 1YI2E 1VQ5E 2CQLA 1K73G 3I55E 5HL7E 3CCME 2QEXE 1QVGE 1VQ6E 2QA4E 3CCQE 3CCVE 1Q86G 5JVGE 1YITE 3OW2E 5MLCH 2OTLE 3CC7E 3CC2E 5JVHE 1KD1G 1VQ4E 1W2BE 4WF9E 3CCUE 1YJNE 3CMEE 1RL6A 3CF5E 1VQOE 4IOCE 1K8AG 3CPWE 1KC8G 5H1SI 1YHQE 1NJIG 1VQ9E 3CC4E 1JJ2E 3DLLE 1M90G 3J7ZG 3CCSE 4UY8G 4WFBE 3CXCE 5GADG 3G71E 5GAGG 1VQME 1QVFE 3PIPE 5DM7E 5GAEG 4IO9E 1VQLE 1N8RG 1Q82G 3G6EE 1Q7YG 3CCRE 2ZJRE 3CMAE 1VQPE 2OTJE 1YJ9E 2ZJPE 3CCEE 3I56E 1YIJE 1VQNE 5AN9B 4IOAE 1S72E 1KQSE 4U67E 3G4SE 3CD6E 1VQKE 2ZJQE 1Q81G 4WCEE 3CCLE 1K9MG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAH G;  1VQ7 E;  4WFA E;  4WFN E;  3PIO E;  1YJW E;  1VQ8 E;  5DM6 E;  1M1K G;  3CCJ E;  1YI2 E;  1VQ5 E;  2CQL A;  1K73 G;  3I55 E;  5HL7 E;  3CCM E;  2QEX E;  1QVG E;  1VQ6 E;  2QA4 E;  3CCQ E;  3CCV E;  1Q86 G;  5JVG E;  1YIT E;  3OW2 E;  5MLC H;  2OTL E;  3CC7 E;  3CC2 E;  5JVH E;  1KD1 G;  1VQ4 E;  1W2B E;  4WF9 E;  3CCU E;  1YJN E;  3CME E;  1RL6 A;  3CF5 E;  1VQO E;  4IOC E;  1K8A G;  3CPW E;  1KC8 G;  5H1S I;  1YHQ E;  1NJI G;  1VQ9 E;  3CC4 E;  1JJ2 E;  3DLL E;  1M90 G;  3J7Z G;  3CCS E;  4UY8 G;  4WFB E;  3CXC E;  5GAD G;  3G71 E;  5GAG G;  1VQM E;  1QVF E;  3PIP E;  5DM7 E;  5GAE G;  4IO9 E;  1VQL E;  1N8R G;  1Q82 G;  3G6E E;  1Q7Y G;  3CCR E;  2ZJR E;  3CMA E;  1VQP E;  2OTJ E;  1YJ9 E;  2ZJP E;  3CCE E;  3I56 E;  1YIJ E;  1VQN E;  5AN9 B;  4IOA E;  1S72 E;  1KQS E;  4U67 E;  3G4S E;  3CD6 E;  1VQK E;  2ZJQ E;  1Q81 G;  4WCE E;  3CCL E;  1K9M G; 
#chains in the Genus database with same CATH topology
 3CKF A;  5GAH G;  1VQ7 E;  2I5V O;  4WFA E;  4WFN E;  3PIO E;  1FJ1 E;  1YJW E;  1VQ8 E;  5DM6 E;  1M1K G;  3CCJ E;  1YI2 E;  1VQ5 E;  2CQL A;  1K73 G;  3I55 E;  5HL7 E;  3CCM E;  2QEX E;  1QVG E;  1VQ6 E;  2QA4 E;  3CCQ E;  3CCV E;  1Q86 G;  5JVG E;  1YIT E;  2HKD A;  3OW2 E;  5MLC H;  2OTL E;  3CC7 E;  3IG9 A;  3CC2 E;  5JVH E;  1KD1 G;  1VQ4 E;  1W2B E;  4WF9 E;  3CCU E;  1RJL C;  2OY8 A;  3IGE A;  1YJN E;  3CME E;  5B2A O;  1RL6 A;  3CF5 E;  2G8C O;  1VQO E;  1P4P A;  2OL6 O;  4IOC E;  2AF5 A;  1K8A G;  2OL7 A;  3CPW E;  1KC8 G;  5H1S I;  5B10 O;  1YHQ E;  5B3M O;  2FKJ A;  1NJI G;  1OSP O;  1VQ9 E;  2OL8 O;  3CC4 E;  1JJ2 E;  3DLL E;  1M90 G;  3J7Z G;  3CCS E;  4UY8 G;  4WFB E;  3CXC E;  5GAD G;  3G71 E;  5GAG G;  2OY7 A;  1VQM E;  2I5Z O;  1QVF E;  3PIP E;  3CKG A;  2FKG A;  5DM7 E;  5GAE G;  4IO9 E;  1VQL E;  1N8R G;  1Q82 G;  3G6E E;  1Q7Y G;  3CCR E;  2OY5 O;  2ZJR E;  3CMA E;  1VQP E;  5B11 O;  2OTJ E;  1YJ9 E;  2OYB O;  2ZJP E;  3CCE E;  3I56 E;  3EC5 A;  1YIJ E;  1VQN E;  3AUM O;  5AN9 B;  4IOA E;  1S72 E;  1KQS E;  4U67 E;  3G4S E;  3CD6 E;  1VQK E;  2ZJQ E;  1Q81 G;  2PI3 O;  4WCE E;  3CCL E;  2OY1 O;  1K9M G; 
#chains in the Genus database with same CATH homology
 5GAH G;  1VQ7 E;  4WFA E;  4WFN E;  3PIO E;  1YJW E;  1VQ8 E;  5DM6 E;  1M1K G;  3CCJ E;  1YI2 E;  1VQ5 E;  2CQL A;  1K73 G;  3I55 E;  5HL7 E;  3CCM E;  2QEX E;  1QVG E;  1VQ6 E;  2QA4 E;  3CCQ E;  3CCV E;  1Q86 G;  5JVG E;  1YIT E;  3OW2 E;  5MLC H;  2OTL E;  3CC7 E;  3CC2 E;  5JVH E;  1KD1 G;  1VQ4 E;  1W2B E;  4WF9 E;  3CCU E;  1YJN E;  3CME E;  1RL6 A;  3CF5 E;  1VQO E;  4IOC E;  1K8A G;  3CPW E;  1KC8 G;  5H1S I;  1YHQ E;  1NJI G;  1VQ9 E;  3CC4 E;  1JJ2 E;  3DLL E;  1M90 G;  3J7Z G;  3CCS E;  4UY8 G;  4WFB E;  3CXC E;  5GAD G;  3G71 E;  5GAG G;  1VQM E;  1QVF E;  3PIP E;  5DM7 E;  5GAE G;  4IO9 E;  1VQL E;  1N8R G;  1Q82 G;  3G6E E;  1Q7Y G;  3CCR E;  2ZJR E;  3CMA E;  1VQP E;  2OTJ E;  1YJ9 E;  2ZJP E;  3CCE E;  3I56 E;  1YIJ E;  1VQN E;  5AN9 B;  4IOA E;  1S72 E;  1KQS E;  4U67 E;  3G4S E;  3CD6 E;  1VQK E;  2ZJQ E;  1Q81 G;  4WCE E;  3CCL E;  1K9M G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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