3CD6E

Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
Total Genus 39
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-6)EMPTYTIV1 (43-46)TI1 (8-11)S2 (12-16)TII'1 (16-19)S5 (38-43)TII1 (35-38)S6 (46-51)AH1 (56-78)S7 (80-87)TII'4 (127-130)TIV2 (88-91)TII'2 (98-101)3H1 (107-109)TIV3 (104-107)S10 (114-117)TII'3 (119-122)AH2 (138-151)S13 (165-170)TIV4 (154-157)TI3 (158-161)TIV5 (159-162)TIV6 (160-163)TI2 (24-27)S9 (101-105)S3 (19-24)S4 (27-32)S12 (130-135)S8 (94-98)S11 (123-127)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 39
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cd6E02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cd6E01
4WF9E 5GAGG 1W2BE 1S72E 3J7ZG 5GADG 3CCJE 1YIJE 1YJWE 1M1KG 5DM6E 2ZJPE 4IO9E 1K9MG 4IOAE 3CC7E 3CCSE 3CCUE 1K8AG 4WCEE 1YI2E 4U67E 1KD1G 1VQLE 1Q81G 1VQ7E 3CCEE 1QVGE 3CCVE 1VQ9E 1VQ6E 1N8RG 3G71E 1VQKE 5DM7E 3CMAE 2QEXE 3CCRE 5JVGE 3I55E 5GAEG 1K73G 3PIPE 4UY8G 1Q86G 2OTLE 5AN9B 3DLLE 3CCME 1JJ2E 5MLCH 3CC2E 4WFBE 3CD6E 3CMEE 5H1SI 4IOCE 1M90G 1YJNE 1Q7YG 1YITE 1Q82G 2ZJRE 3G6EE 3CF5E 1KC8G 2CQLA 2QA4E 3CC4E 1VQME 1VQ4E 4WFNE 3CPWE 1VQPE 1QVFE 3I56E 3CXCE 1VQ5E 1VQOE 2ZJQE 1NJIG 5JVHE 4WFAE 3PIOE 5HL7E 3CCQE 1RL6A 3G4SE 1YHQE 1VQNE 1KQSE 5GAHG 1VQ8E 2OTJE 3CCLE 1YJ9E 3OW2E
chains in the Genus database with same CATH superfamily
4WF9E 2AF5A 1FJ1E 5GAGG 1W2BE 1S72E 3J7ZG 5GADG 3CCJE 1YIJE 5B2AO 1YJWE 3IGEA 2OYBO 1M1KG 5DM6E 2ZJPE 4IO9E 1K9MG 4IOAE 3CC7E 2PI3O 3CCSE 3CCUE 2FKJA 5B3MO 4WCEE 1K8AG 1YI2E 4U67E 1KD1G 1VQLE 5B10O 1Q81G 2OL6O 1VQ7E 3CCEE 1QVGE 3CCVE 1VQ9E 1VQ6E 1P4PA 2I5ZO 1N8RG 3G71E 1VQKE 5B11O 5DM7E 2QEXE 3IG9A 3CMAE 3CCRE 5JVGE 3I55E 5GAEG 1K73G 3PIPE 2OY7A 4UY8G 1Q86G 2OTLE 5AN9B 3DLLE 3CCME 1JJ2E 2I5VO 3AUMO 5MLCH 3CC2E 4WFBE 3CD6E 2OY8A 2FKGA 3CMEE 5H1SI 4IOCE 1M90G 1YJNE 1Q7YG 1OSPO 1YITE 2OL8O 1Q82G 2ZJRE 2OL7A 3G6EE 3CF5E 3CKGA 1KC8G 2CQLA 2HKDA 2QA4E 3CC4E 1VQME 1VQ4E 4WFNE 3CPWE 1VQPE 2OY5O 1QVFE 3I56E 3CXCE 1VQ5E 1VQOE 2ZJQE 1NJIG 5JVHE 4WFAE 2G8CO 3PIOE 5HL7E 1RJLC 3CCQE 1RL6A 3EC5A 3G4SE 1YHQE 1VQNE 1KQSE 3CKFA 5GAHG 1VQ8E 2OTJE 2OY1O 3CCLE 1YJ9E 3OW2E
chains in the Genus database with same CATH topology
4WF9E 5GAGG 1W2BE 1S72E 3J7ZG 5GADG 3CCJE 1YIJE 1YJWE 1M1KG 5DM6E 2ZJPE 4IO9E 1K9MG 4IOAE 3CC7E 3CCSE 3CCUE 1K8AG 4WCEE 1YI2E 4U67E 1KD1G 1VQLE 1Q81G 1VQ7E 3CCEE 1QVGE 3CCVE 1VQ9E 1VQ6E 1N8RG 3G71E 1VQKE 5DM7E 3CMAE 2QEXE 3CCRE 5JVGE 3I55E 5GAEG 1K73G 3PIPE 4UY8G 1Q86G 2OTLE 5AN9B 3DLLE 3CCME 1JJ2E 5MLCH 3CC2E 4WFBE 3CD6E 3CMEE 5H1SI 4IOCE 1M90G 1YJNE 1Q7YG 1YITE 1Q82G 2ZJRE 3G6EE 3CF5E 1KC8G 2CQLA 2QA4E 3CC4E 1VQME 1VQ4E 4WFNE 3CPWE 1VQPE 1QVFE 3I56E 3CXCE 1VQ5E 1VQOE 2ZJQE 1NJIG 5JVHE 4WFAE 3PIOE 5HL7E 3CCQE 1RL6A 3G4SE 1YHQE 1VQNE 1KQSE 5GAHG 1VQ8E 2OTJE 3CCLE 1YJ9E 3OW2E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WF9 E;  5GAG G;  1W2B E;  1S72 E;  3J7Z G;  5GAD G;  3CCJ E;  1YIJ E;  1YJW E;  1M1K G;  5DM6 E;  2ZJP E;  4IO9 E;  1K9M G;  4IOA E;  3CC7 E;  3CCS E;  3CCU E;  1K8A G;  4WCE E;  1YI2 E;  4U67 E;  1KD1 G;  1VQL E;  1Q81 G;  1VQ7 E;  3CCE E;  1QVG E;  3CCV E;  1VQ9 E;  1VQ6 E;  1N8R G;  3G71 E;  1VQK E;  5DM7 E;  3CMA E;  2QEX E;  3CCR E;  5JVG E;  3I55 E;  5GAE G;  1K73 G;  3PIP E;  4UY8 G;  1Q86 G;  2OTL E;  5AN9 B;  3DLL E;  3CCM E;  1JJ2 E;  5MLC H;  3CC2 E;  4WFB E;  3CD6 E;  3CME E;  5H1S I;  4IOC E;  1M90 G;  1YJN E;  1Q7Y G;  1YIT E;  1Q82 G;  2ZJR E;  3G6E E;  3CF5 E;  1KC8 G;  2CQL A;  2QA4 E;  3CC4 E;  1VQM E;  1VQ4 E;  4WFN E;  3CPW E;  1VQP E;  1QVF E;  3I56 E;  3CXC E;  1VQ5 E;  1VQO E;  2ZJQ E;  1NJI G;  5JVH E;  4WFA E;  3PIO E;  5HL7 E;  3CCQ E;  1RL6 A;  3G4S E;  1YHQ E;  1VQN E;  1KQS E;  5GAH G;  1VQ8 E;  2OTJ E;  3CCL E;  1YJ9 E;  3OW2 E; 
#chains in the Genus database with same CATH topology
 4WF9 E;  2AF5 A;  1FJ1 E;  5GAG G;  1W2B E;  1S72 E;  3J7Z G;  5GAD G;  3CCJ E;  1YIJ E;  5B2A O;  1YJW E;  3IGE A;  2OYB O;  1M1K G;  5DM6 E;  2ZJP E;  4IO9 E;  1K9M G;  4IOA E;  3CC7 E;  2PI3 O;  3CCS E;  3CCU E;  2FKJ A;  5B3M O;  4WCE E;  1K8A G;  1YI2 E;  4U67 E;  1KD1 G;  1VQL E;  5B10 O;  1Q81 G;  2OL6 O;  1VQ7 E;  3CCE E;  1QVG E;  3CCV E;  1VQ9 E;  1VQ6 E;  1P4P A;  2I5Z O;  1N8R G;  3G71 E;  1VQK E;  5B11 O;  5DM7 E;  2QEX E;  3IG9 A;  3CMA E;  3CCR E;  5JVG E;  3I55 E;  5GAE G;  1K73 G;  3PIP E;  2OY7 A;  4UY8 G;  1Q86 G;  2OTL E;  5AN9 B;  3DLL E;  3CCM E;  1JJ2 E;  2I5V O;  3AUM O;  5MLC H;  3CC2 E;  4WFB E;  3CD6 E;  2OY8 A;  2FKG A;  3CME E;  5H1S I;  4IOC E;  1M90 G;  1YJN E;  1Q7Y G;  1OSP O;  1YIT E;  2OL8 O;  1Q82 G;  2ZJR E;  2OL7 A;  3G6E E;  3CF5 E;  3CKG A;  1KC8 G;  2CQL A;  2HKD A;  2QA4 E;  3CC4 E;  1VQM E;  1VQ4 E;  4WFN E;  3CPW E;  1VQP E;  2OY5 O;  1QVF E;  3I56 E;  3CXC E;  1VQ5 E;  1VQO E;  2ZJQ E;  1NJI G;  5JVH E;  4WFA E;  2G8C O;  3PIO E;  5HL7 E;  1RJL C;  3CCQ E;  1RL6 A;  3EC5 A;  3G4S E;  1YHQ E;  1VQN E;  1KQS E;  3CKF A;  5GAH G;  1VQ8 E;  2OTJ E;  2OY1 O;  3CCL E;  1YJ9 E;  3OW2 E; 
#chains in the Genus database with same CATH homology
 4WF9 E;  5GAG G;  1W2B E;  1S72 E;  3J7Z G;  5GAD G;  3CCJ E;  1YIJ E;  1YJW E;  1M1K G;  5DM6 E;  2ZJP E;  4IO9 E;  1K9M G;  4IOA E;  3CC7 E;  3CCS E;  3CCU E;  1K8A G;  4WCE E;  1YI2 E;  4U67 E;  1KD1 G;  1VQL E;  1Q81 G;  1VQ7 E;  3CCE E;  1QVG E;  3CCV E;  1VQ9 E;  1VQ6 E;  1N8R G;  3G71 E;  1VQK E;  5DM7 E;  3CMA E;  2QEX E;  3CCR E;  5JVG E;  3I55 E;  5GAE G;  1K73 G;  3PIP E;  4UY8 G;  1Q86 G;  2OTL E;  5AN9 B;  3DLL E;  3CCM E;  1JJ2 E;  5MLC H;  3CC2 E;  4WFB E;  3CD6 E;  3CME E;  5H1S I;  4IOC E;  1M90 G;  1YJN E;  1Q7Y G;  1YIT E;  1Q82 G;  2ZJR E;  3G6E E;  3CF5 E;  1KC8 G;  2CQL A;  2QA4 E;  3CC4 E;  1VQM E;  1VQ4 E;  4WFN E;  3CPW E;  1VQP E;  1QVF E;  3I56 E;  3CXC E;  1VQ5 E;  1VQO E;  2ZJQ E;  1NJI G;  5JVH E;  4WFA E;  3PIO E;  5HL7 E;  3CCQ E;  1RL6 A;  3G4S E;  1YHQ E;  1VQN E;  1KQS E;  5GAH G;  1VQ8 E;  2OTJ E;  3CCL E;  1YJ9 E;  3OW2 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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