4UY8G

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
176
structure length
176
Chain Sequence
SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S RIBOSOMAL PROTEIN L32
total genus 30
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4uy8G02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4uy8G01
3G4SE 5GAEG 3CMAE 1VQ4E 1K73G 2ZJQE 3CC4E 3CCVE 2ZJPE 3CPWE 5AN9B 1Q81G 3CCRE 3DLLE 1VQPE 1VQME 3J7ZG 2OTLE 3PIPE 3CD6E 1YJWE 1KQSE 1K9MG 2ZJRE 1K8AG 5HL7E 5GAGG 3CCSE 1VQ8E 3CCJE 3CCME 3G6EE 3CC2E 3OW2E 3CCEE 1NJIG 5MLCH 3CC7E 4WFAE 4WCEE 5H1SI 2OTJE 5JVHE 1Q7YG 2QA4E 1KD1G 5GAHG 1M1KG 1VQ7E 1VQNE 1VQ6E 5DM6E 1QVGE 5GADG 1YITE 1N8RG 4IOAE 3PIOE 1QVFE 3CXCE 4WFBE 1VQ5E 1YJ9E 4UY8G 1W2BE 1M90G 1VQ9E 4WF9E 3I56E 1YHQE 4WFNE 1S72E 2CQLA 1RL6A 5DM7E 1Q86G 1YIJE 1VQKE 2QEXE 1KC8G 3I55E 1Q82G 3CCUE 3G71E 1VQOE 3CMEE 1JJ2E 4U67E 1YJNE 3CF5E 4IOCE 3CCQE 4IO9E 3CCLE 1VQLE 1YI2E 5JVGE
chains in the Genus database with same CATH superfamily
3G4SE 1P4PA 5GAEG 3CMAE 1VQ4E 1K73G 2ZJQE 2FKJA 5B2AO 3CKGA 3CC4E 3CCVE 2ZJPE 3CPWE 5AN9B 2HKDA 1Q81G 3CCRE 3DLLE 3EC5A 1VQPE 1VQME 2PI3O 3J7ZG 2OTLE 1RJLC 3PIPE 3CD6E 1YJWE 1OSPO 1KQSE 2OL7A 2OY8A 1K9MG 3AUMO 2I5ZO 2ZJRE 1K8AG 5HL7E 5GAGG 3CCSE 1VQ8E 3CCJE 3CCME 2OL6O 3G6EE 3CC2E 2OY1O 3OW2E 3CCEE 1NJIG 5MLCH 3CC7E 4WFAE 4WCEE 5H1SI 2OTJE 5JVHE 1Q7YG 5B10O 2QA4E 2AF5A 5B3MO 1KD1G 5GAHG 1M1KG 1VQ7E 1VQNE 2I5VO 1VQ6E 5DM6E 2OL8O 1QVGE 2FKGA 5GADG 1YITE 1N8RG 4IOAE 3PIOE 1QVFE 3CXCE 4WFBE 3IGEA 2OY7A 1VQ5E 1YJ9E 2OY5O 4UY8G 3CKFA 1W2BE 1M90G 1VQ9E 4WF9E 3I56E 4WFNE 1YHQE 1YIJE 2CQLA 1RL6A 2OYBO 5DM7E 1S72E 1Q86G 1VQKE 2QEXE 1KC8G 3I55E 1Q82G 3CCUE 3G71E 1VQOE 3CMEE 1JJ2E 4U67E 1YJNE 5B11O 3CF5E 4IOCE 3CCQE 4IO9E 3CCLE 1FJ1E 1VQLE 1YI2E 5JVGE 3IG9A 2G8CO
chains in the Genus database with same CATH topology
3G4SE 5GAEG 3CMAE 1VQ4E 1K73G 2ZJQE 3CC4E 3CCVE 2ZJPE 3CPWE 5AN9B 1Q81G 3CCRE 3DLLE 1VQPE 1VQME 3J7ZG 2OTLE 3PIPE 3CD6E 1YJWE 1KQSE 1K9MG 2ZJRE 1K8AG 5HL7E 5GAGG 3CCSE 1VQ8E 3CCJE 3CCME 3G6EE 3CC2E 3OW2E 3CCEE 1NJIG 5MLCH 3CC7E 4WFAE 4WCEE 5H1SI 2OTJE 5JVHE 1Q7YG 2QA4E 1KD1G 5GAHG 1M1KG 1VQ7E 1VQNE 1VQ6E 5DM6E 1QVGE 5GADG 1YITE 1N8RG 4IOAE 3PIOE 1QVFE 3CXCE 4WFBE 1VQ5E 1YJ9E 4UY8G 1W2BE 1M90G 1VQ9E 4WF9E 3I56E 1YHQE 4WFNE 1S72E 2CQLA 1RL6A 5DM7E 1Q86G 1YIJE 1VQKE 2QEXE 1KC8G 3I55E 1Q82G 3CCUE 3G71E 1VQOE 3CMEE 1JJ2E 4U67E 1YJNE 3CF5E 4IOCE 3CCQE 4IO9E 3CCLE 1VQLE 1YI2E 5JVGE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G4S E;  5GAE G;  3CMA E;  1VQ4 E;  1K73 G;  2ZJQ E;  3CC4 E;  3CCV E;  2ZJP E;  3CPW E;  5AN9 B;  1Q81 G;  3CCR E;  3DLL E;  1VQP E;  1VQM E;  3J7Z G;  2OTL E;  3PIP E;  3CD6 E;  1YJW E;  1KQS E;  1K9M G;  2ZJR E;  1K8A G;  5HL7 E;  5GAG G;  3CCS E;  1VQ8 E;  3CCJ E;  3CCM E;  3G6E E;  3CC2 E;  3OW2 E;  3CCE E;  1NJI G;  5MLC H;  3CC7 E;  4WFA E;  4WCE E;  5H1S I;  2OTJ E;  5JVH E;  1Q7Y G;  2QA4 E;  1KD1 G;  5GAH G;  1M1K G;  1VQ7 E;  1VQN E;  1VQ6 E;  5DM6 E;  1QVG E;  5GAD G;  1YIT E;  1N8R G;  4IOA E;  3PIO E;  1QVF E;  3CXC E;  4WFB E;  1VQ5 E;  1YJ9 E;  4UY8 G;  1W2B E;  1M90 G;  1VQ9 E;  4WF9 E;  3I56 E;  1YHQ E;  4WFN E;  1S72 E;  2CQL A;  1RL6 A;  5DM7 E;  1Q86 G;  1YIJ E;  1VQK E;  2QEX E;  1KC8 G;  3I55 E;  1Q82 G;  3CCU E;  3G71 E;  1VQO E;  3CME E;  1JJ2 E;  4U67 E;  1YJN E;  3CF5 E;  4IOC E;  3CCQ E;  4IO9 E;  3CCL E;  1VQL E;  1YI2 E;  5JVG E; 
#chains in the Genus database with same CATH topology
 3G4S E;  1P4P A;  5GAE G;  3CMA E;  1VQ4 E;  1K73 G;  2ZJQ E;  2FKJ A;  5B2A O;  3CKG A;  3CC4 E;  3CCV E;  2ZJP E;  3CPW E;  5AN9 B;  2HKD A;  1Q81 G;  3CCR E;  3DLL E;  3EC5 A;  1VQP E;  1VQM E;  2PI3 O;  3J7Z G;  2OTL E;  1RJL C;  3PIP E;  3CD6 E;  1YJW E;  1OSP O;  1KQS E;  2OL7 A;  2OY8 A;  1K9M G;  3AUM O;  2I5Z O;  2ZJR E;  1K8A G;  5HL7 E;  5GAG G;  3CCS E;  1VQ8 E;  3CCJ E;  3CCM E;  2OL6 O;  3G6E E;  3CC2 E;  2OY1 O;  3OW2 E;  3CCE E;  1NJI G;  5MLC H;  3CC7 E;  4WFA E;  4WCE E;  5H1S I;  2OTJ E;  5JVH E;  1Q7Y G;  5B10 O;  2QA4 E;  2AF5 A;  5B3M O;  1KD1 G;  5GAH G;  1M1K G;  1VQ7 E;  1VQN E;  2I5V O;  1VQ6 E;  5DM6 E;  2OL8 O;  1QVG E;  2FKG A;  5GAD G;  1YIT E;  1N8R G;  4IOA E;  3PIO E;  1QVF E;  3CXC E;  4WFB E;  3IGE A;  2OY7 A;  1VQ5 E;  1YJ9 E;  2OY5 O;  4UY8 G;  3CKF A;  1W2B E;  1M90 G;  1VQ9 E;  4WF9 E;  3I56 E;  4WFN E;  1YHQ E;  1YIJ E;  2CQL A;  1RL6 A;  2OYB O;  5DM7 E;  1S72 E;  1Q86 G;  1VQK E;  2QEX E;  1KC8 G;  3I55 E;  1Q82 G;  3CCU E;  3G71 E;  1VQO E;  3CME E;  1JJ2 E;  4U67 E;  1YJN E;  5B11 O;  3CF5 E;  4IOC E;  3CCQ E;  4IO9 E;  3CCL E;  1FJ1 E;  1VQL E;  1YI2 E;  5JVG E;  3IG9 A;  2G8C O; 
#chains in the Genus database with same CATH homology
 3G4S E;  5GAE G;  3CMA E;  1VQ4 E;  1K73 G;  2ZJQ E;  3CC4 E;  3CCV E;  2ZJP E;  3CPW E;  5AN9 B;  1Q81 G;  3CCR E;  3DLL E;  1VQP E;  1VQM E;  3J7Z G;  2OTL E;  3PIP E;  3CD6 E;  1YJW E;  1KQS E;  1K9M G;  2ZJR E;  1K8A G;  5HL7 E;  5GAG G;  3CCS E;  1VQ8 E;  3CCJ E;  3CCM E;  3G6E E;  3CC2 E;  3OW2 E;  3CCE E;  1NJI G;  5MLC H;  3CC7 E;  4WFA E;  4WCE E;  5H1S I;  2OTJ E;  5JVH E;  1Q7Y G;  2QA4 E;  1KD1 G;  5GAH G;  1M1K G;  1VQ7 E;  1VQN E;  1VQ6 E;  5DM6 E;  1QVG E;  5GAD G;  1YIT E;  1N8R G;  4IOA E;  3PIO E;  1QVF E;  3CXC E;  4WFB E;  1VQ5 E;  1YJ9 E;  4UY8 G;  1W2B E;  1M90 G;  1VQ9 E;  4WF9 E;  3I56 E;  1YHQ E;  4WFN E;  1S72 E;  2CQL A;  1RL6 A;  5DM7 E;  1Q86 G;  1YIJ E;  1VQK E;  2QEX E;  1KC8 G;  3I55 E;  1Q82 G;  3CCU E;  3G71 E;  1VQO E;  3CME E;  1JJ2 E;  4U67 E;  1YJN E;  3CF5 E;  4IOC E;  3CCQ E;  4IO9 E;  3CCL E;  1VQL E;  1YI2 E;  5JVG E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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