4WFAE

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with linezolid
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
157
structure length
157
Chain Sequence
VTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKEDRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S rRNA
total genus 21
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4wfaE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4wfaE01
1N8RG 1VQOE 2ZJPE 2QA4E 1YJNE 1VQME 1KQSE 4WFBE 1YHQE 1Q7YG 2OTLE 3CCVE 1VQNE 1K9MG 1K8AG 3CD6E 5GAGG 1YJ9E 1NJIG 3G6EE 1VQ5E 3CPWE 4IOCE 1YITE 1M90G 3DLLE 4UY8G 2CQLA 1YIJE 1VQ6E 1QVFE 5DM7E 1VQ9E 5GAEG 1M1KG 1S72E 1Q86G 2ZJRE 3CCLE 1W2BE 3G71E 1KD1G 4WCEE 1Q82G 5GAHG 3CCRE 1VQ4E 5JVGE 3J7ZG 3CC4E 3CCUE 5H1SI 5JVHE 3CC7E 3CCJE 1JJ2E 1QVGE 1VQKE 5DM6E 3CXCE 1Q81G 3PIOE 3CC2E 1K73G 4WF9E 3G4SE 3OW2E 4IOAE 3I55E 1VQ7E 4U67E 2QEXE 1VQ8E 1VQPE 3CCEE 3CCME 5HL7E 4WFAE 3PIPE 1KC8G 3CMEE 4WFNE 1RL6A 3CMAE 3CCSE 1YI2E 3CF5E 2ZJQE 4IO9E 3CCQE 1YJWE 5GADG 5AN9B 2OTJE 3I56E 5MLCH 1VQLE
chains in the Genus database with same CATH superfamily
2AF5A 1N8RG 3IG9A 2OL8O 1VQOE 2ZJPE 2OL6O 2QA4E 1YJNE 3EC5A 1VQME 1KQSE 2OY8A 4WFBE 1YHQE 1Q7YG 2OTLE 3IGEA 1FJ1E 3CCVE 1VQNE 5B2AO 1K9MG 1K8AG 3CD6E 2I5VO 5GAGG 1YJ9E 1NJIG 3G6EE 1VQ5E 3CPWE 4IOCE 2G8CO 1YITE 1M90G 3DLLE 4UY8G 2CQLA 3CKFA 5B3MO 1YIJE 1VQ6E 1QVFE 5DM7E 1VQ9E 5GAEG 1M1KG 1S72E 1Q86G 2ZJRE 3CCLE 1W2BE 5B10O 1P4PA 3G71E 1KD1G 2OY7A 2OL7A 4WCEE 1Q82G 5GAHG 3CCRE 1VQ4E 5JVGE 3J7ZG 3CC4E 3CCUE 5H1SI 5JVHE 3CC7E 2OYBO 3CCJE 2PI3O 1JJ2E 1QVGE 2I5ZO 1VQKE 5DM6E 1OSPO 3CXCE 1Q81G 3PIOE 2OY1O 1RJLC 5B11O 2FKJA 3CC2E 1K73G 4WF9E 3G4SE 3OW2E 4IOAE 3I55E 1VQ7E 4U67E 2QEXE 1VQ8E 1VQPE 2HKDA 3CCEE 3CCME 5HL7E 4WFAE 2OY5O 3PIPE 1KC8G 2FKGA 3CMEE 4WFNE 1RL6A 3CMAE 3CCSE 3AUMO 1YI2E 3CF5E 2ZJQE 4IO9E 3CCQE 3CKGA 1YJWE 5GADG 5AN9B 2OTJE 3I56E 5MLCH 1VQLE
chains in the Genus database with same CATH topology
1N8RG 1VQOE 2ZJPE 2QA4E 1YJNE 1VQME 1KQSE 4WFBE 1YHQE 1Q7YG 2OTLE 3CCVE 1VQNE 1K9MG 1K8AG 3CD6E 5GAGG 1YJ9E 1NJIG 3G6EE 1VQ5E 3CPWE 4IOCE 1YITE 1M90G 3DLLE 4UY8G 2CQLA 1YIJE 1VQ6E 1QVFE 5DM7E 1VQ9E 5GAEG 1M1KG 1S72E 1Q86G 2ZJRE 3CCLE 1W2BE 3G71E 1KD1G 4WCEE 1Q82G 5GAHG 3CCRE 1VQ4E 5JVGE 3J7ZG 3CC4E 3CCUE 5H1SI 5JVHE 3CC7E 3CCJE 1JJ2E 1QVGE 1VQKE 5DM6E 3CXCE 1Q81G 3PIOE 3CC2E 1K73G 4WF9E 3G4SE 3OW2E 4IOAE 3I55E 1VQ7E 4U67E 2QEXE 1VQ8E 1VQPE 3CCEE 3CCME 5HL7E 4WFAE 3PIPE 1KC8G 3CMEE 4WFNE 1RL6A 3CMAE 3CCSE 1YI2E 3CF5E 2ZJQE 4IO9E 3CCQE 1YJWE 5GADG 5AN9B 2OTJE 3I56E 5MLCH 1VQLE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N8R G;  1VQO E;  2ZJP E;  2QA4 E;  1YJN E;  1VQM E;  1KQS E;  4WFB E;  1YHQ E;  1Q7Y G;  2OTL E;  3CCV E;  1VQN E;  1K9M G;  1K8A G;  3CD6 E;  5GAG G;  1YJ9 E;  1NJI G;  3G6E E;  1VQ5 E;  3CPW E;  4IOC E;  1YIT E;  1M90 G;  3DLL E;  4UY8 G;  2CQL A;  1YIJ E;  1VQ6 E;  1QVF E;  5DM7 E;  1VQ9 E;  5GAE G;  1M1K G;  1S72 E;  1Q86 G;  2ZJR E;  3CCL E;  1W2B E;  3G71 E;  1KD1 G;  4WCE E;  1Q82 G;  5GAH G;  3CCR E;  1VQ4 E;  5JVG E;  3J7Z G;  3CC4 E;  3CCU E;  5H1S I;  5JVH E;  3CC7 E;  3CCJ E;  1JJ2 E;  1QVG E;  1VQK E;  5DM6 E;  3CXC E;  1Q81 G;  3PIO E;  3CC2 E;  1K73 G;  4WF9 E;  3G4S E;  3OW2 E;  4IOA E;  3I55 E;  1VQ7 E;  4U67 E;  2QEX E;  1VQ8 E;  1VQP E;  3CCE E;  3CCM E;  5HL7 E;  4WFA E;  3PIP E;  1KC8 G;  3CME E;  4WFN E;  1RL6 A;  3CMA E;  3CCS E;  1YI2 E;  3CF5 E;  2ZJQ E;  4IO9 E;  3CCQ E;  1YJW E;  5GAD G;  5AN9 B;  2OTJ E;  3I56 E;  5MLC H;  1VQL E; 
#chains in the Genus database with same CATH topology
 2AF5 A;  1N8R G;  3IG9 A;  2OL8 O;  1VQO E;  2ZJP E;  2OL6 O;  2QA4 E;  1YJN E;  3EC5 A;  1VQM E;  1KQS E;  2OY8 A;  4WFB E;  1YHQ E;  1Q7Y G;  2OTL E;  3IGE A;  1FJ1 E;  3CCV E;  1VQN E;  5B2A O;  1K9M G;  1K8A G;  3CD6 E;  2I5V O;  5GAG G;  1YJ9 E;  1NJI G;  3G6E E;  1VQ5 E;  3CPW E;  4IOC E;  2G8C O;  1YIT E;  1M90 G;  3DLL E;  4UY8 G;  2CQL A;  3CKF A;  5B3M O;  1YIJ E;  1VQ6 E;  1QVF E;  5DM7 E;  1VQ9 E;  5GAE G;  1M1K G;  1S72 E;  1Q86 G;  2ZJR E;  3CCL E;  1W2B E;  5B10 O;  1P4P A;  3G71 E;  1KD1 G;  2OY7 A;  2OL7 A;  4WCE E;  1Q82 G;  5GAH G;  3CCR E;  1VQ4 E;  5JVG E;  3J7Z G;  3CC4 E;  3CCU E;  5H1S I;  5JVH E;  3CC7 E;  2OYB O;  3CCJ E;  2PI3 O;  1JJ2 E;  1QVG E;  2I5Z O;  1VQK E;  5DM6 E;  1OSP O;  3CXC E;  1Q81 G;  3PIO E;  2OY1 O;  1RJL C;  5B11 O;  2FKJ A;  3CC2 E;  1K73 G;  4WF9 E;  3G4S E;  3OW2 E;  4IOA E;  3I55 E;  1VQ7 E;  4U67 E;  2QEX E;  1VQ8 E;  1VQP E;  2HKD A;  3CCE E;  3CCM E;  5HL7 E;  4WFA E;  2OY5 O;  3PIP E;  1KC8 G;  2FKG A;  3CME E;  4WFN E;  1RL6 A;  3CMA E;  3CCS E;  3AUM O;  1YI2 E;  3CF5 E;  2ZJQ E;  4IO9 E;  3CCQ E;  3CKG A;  1YJW E;  5GAD G;  5AN9 B;  2OTJ E;  3I56 E;  5MLC H;  1VQL E; 
#chains in the Genus database with same CATH homology
 1N8R G;  1VQO E;  2ZJP E;  2QA4 E;  1YJN E;  1VQM E;  1KQS E;  4WFB E;  1YHQ E;  1Q7Y G;  2OTL E;  3CCV E;  1VQN E;  1K9M G;  1K8A G;  3CD6 E;  5GAG G;  1YJ9 E;  1NJI G;  3G6E E;  1VQ5 E;  3CPW E;  4IOC E;  1YIT E;  1M90 G;  3DLL E;  4UY8 G;  2CQL A;  1YIJ E;  1VQ6 E;  1QVF E;  5DM7 E;  1VQ9 E;  5GAE G;  1M1K G;  1S72 E;  1Q86 G;  2ZJR E;  3CCL E;  1W2B E;  3G71 E;  1KD1 G;  4WCE E;  1Q82 G;  5GAH G;  3CCR E;  1VQ4 E;  5JVG E;  3J7Z G;  3CC4 E;  3CCU E;  5H1S I;  5JVH E;  3CC7 E;  3CCJ E;  1JJ2 E;  1QVG E;  1VQK E;  5DM6 E;  3CXC E;  1Q81 G;  3PIO E;  3CC2 E;  1K73 G;  4WF9 E;  3G4S E;  3OW2 E;  4IOA E;  3I55 E;  1VQ7 E;  4U67 E;  2QEX E;  1VQ8 E;  1VQP E;  3CCE E;  3CCM E;  5HL7 E;  4WFA E;  3PIP E;  1KC8 G;  3CME E;  4WFN E;  1RL6 A;  3CMA E;  3CCS E;  1YI2 E;  3CF5 E;  2ZJQ E;  4IO9 E;  3CCQ E;  1YJW E;  5GAD G;  5AN9 B;  2OTJ E;  3I56 E;  5MLC H;  1VQL E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...