4WFAE

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with linezolid
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
157
structure length
157
Chain Sequence
VTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKEDRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S rRNA
total genus 21
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4wfaE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4wfaE01
3I55E 1RL6A 1QVGE 1M90G 1Q81G 3CC4E 4U67E 3G6EE 3CCRE 1KC8G 5DM7E 4IO9E 1YI2E 2ZJQE 1K9MG 3CXCE 2ZJRE 4WFBE 3PIOE 1VQOE 2OTLE 1Q86G 3I56E 3CD6E 1KD1G 1VQ4E 1YIJE 3CMEE 3CPWE 1YJ9E 4WFAE 5JVHE 5MLCH 4IOCE 2CQLA 1YITE 5HL7E 1NJIG 5DM6E 3CCSE 5GAGG 3DLLE 1VQ9E 2OTJE 3G4SE 5GADG 1Q7YG 5GAHG 1VQME 3CCQE 1VQ8E 5AN9B 3CCME 3J7ZG 1K8AG 1VQ5E 1Q82G 3CC7E 4IOAE 1QVFE 1W2BE 3CCJE 3CMAE 5JVGE 4WCEE 3PIPE 1N8RG 1JJ2E 1KQSE 1YJNE 2QA4E 1VQKE 3CCLE 3CC2E 1YJWE 3CCVE 1K73G 2QEXE 3OW2E 1M1KG 5GAEG 1S72E 1VQLE 3CCEE 1VQ7E 1VQ6E 3G71E 5H1SI 4WFNE 3CCUE 1VQPE 4WF9E 4UY8G 2ZJPE 3CF5E 1YHQE 1VQNE
chains in the Genus database with same CATH superfamily
3I55E 1RL6A 1QVGE 2OYBO 1M90G 1Q81G 3CC4E 4U67E 3G6EE 2OL8O 1P4PA 1OSPO 3CCRE 1KC8G 5DM7E 4IO9E 1YI2E 2ZJQE 1K9MG 3CXCE 2ZJRE 2OY8A 4WFBE 3PIOE 1VQOE 2OTLE 1Q86G 3I56E 3CD6E 1KD1G 1VQ4E 1YIJE 3CMEE 2OY1O 3CPWE 2G8CO 1YJ9E 2HKDA 4WFAE 5JVHE 3IG9A 5MLCH 4IOCE 2OY7A 1FJ1E 2FKGA 2CQLA 1YITE 5HL7E 1NJIG 5DM6E 3CKGA 3CCSE 5GAGG 3DLLE 1VQ9E 2OTJE 2FKJA 3G4SE 5GADG 1Q7YG 3CKFA 5B11O 5GAHG 1VQME 3CCQE 1VQ8E 5AN9B 3CCME 5B10O 3J7ZG 1K8AG 1VQ5E 1Q82G 3CC7E 4IOAE 3IGEA 1QVFE 1W2BE 2OL6O 3CCJE 3CMAE 5JVGE 2I5ZO 4WCEE 3PIPE 2PI3O 5B2AO 1N8RG 1JJ2E 1KQSE 1RJLC 1YJNE 2QA4E 1VQKE 3CCLE 3CC2E 1YJWE 3CCVE 1K73G 2QEXE 3OW2E 5GAEG 2I5VO 1M1KG 1S72E 2AF5A 1VQLE 2OL7A 3AUMO 3CCEE 1VQ7E 1VQ6E 3EC5A 3G71E 5B3MO 5H1SI 2OY5O 4WFNE 3CCUE 1VQPE 4WF9E 4UY8G 2ZJPE 3CF5E 1YHQE 1VQNE
chains in the Genus database with same CATH topology
3I55E 1RL6A 1QVGE 1M90G 1Q81G 3CC4E 4U67E 3G6EE 3CCRE 1KC8G 5DM7E 4IO9E 1YI2E 2ZJQE 1K9MG 3CXCE 2ZJRE 4WFBE 3PIOE 1VQOE 2OTLE 1Q86G 3I56E 3CD6E 1KD1G 1VQ4E 1YIJE 3CMEE 3CPWE 1YJ9E 4WFAE 5JVHE 5MLCH 4IOCE 2CQLA 1YITE 5HL7E 1NJIG 5DM6E 3CCSE 5GAGG 3DLLE 1VQ9E 2OTJE 3G4SE 5GADG 1Q7YG 5GAHG 1VQME 3CCQE 1VQ8E 5AN9B 3CCME 3J7ZG 1K8AG 1VQ5E 1Q82G 3CC7E 4IOAE 1QVFE 1W2BE 3CCJE 3CMAE 5JVGE 4WCEE 3PIPE 1N8RG 1JJ2E 1KQSE 1YJNE 2QA4E 1VQKE 3CCLE 3CC2E 1YJWE 3CCVE 1K73G 2QEXE 3OW2E 1M1KG 5GAEG 1S72E 1VQLE 3CCEE 1VQ7E 1VQ6E 3G71E 5H1SI 4WFNE 3CCUE 1VQPE 4WF9E 4UY8G 2ZJPE 3CF5E 1YHQE 1VQNE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I55 E;  1RL6 A;  1QVG E;  1M90 G;  1Q81 G;  3CC4 E;  4U67 E;  3G6E E;  3CCR E;  1KC8 G;  5DM7 E;  4IO9 E;  1YI2 E;  2ZJQ E;  1K9M G;  3CXC E;  2ZJR E;  4WFB E;  3PIO E;  1VQO E;  2OTL E;  1Q86 G;  3I56 E;  3CD6 E;  1KD1 G;  1VQ4 E;  1YIJ E;  3CME E;  3CPW E;  1YJ9 E;  4WFA E;  5JVH E;  5MLC H;  4IOC E;  2CQL A;  1YIT E;  5HL7 E;  1NJI G;  5DM6 E;  3CCS E;  5GAG G;  3DLL E;  1VQ9 E;  2OTJ E;  3G4S E;  5GAD G;  1Q7Y G;  5GAH G;  1VQM E;  3CCQ E;  1VQ8 E;  5AN9 B;  3CCM E;  3J7Z G;  1K8A G;  1VQ5 E;  1Q82 G;  3CC7 E;  4IOA E;  1QVF E;  1W2B E;  3CCJ E;  3CMA E;  5JVG E;  4WCE E;  3PIP E;  1N8R G;  1JJ2 E;  1KQS E;  1YJN E;  2QA4 E;  1VQK E;  3CCL E;  3CC2 E;  1YJW E;  3CCV E;  1K73 G;  2QEX E;  3OW2 E;  1M1K G;  5GAE G;  1S72 E;  1VQL E;  3CCE E;  1VQ7 E;  1VQ6 E;  3G71 E;  5H1S I;  4WFN E;  3CCU E;  1VQP E;  4WF9 E;  4UY8 G;  2ZJP E;  3CF5 E;  1YHQ E;  1VQN E; 
#chains in the Genus database with same CATH topology
 3I55 E;  1RL6 A;  1QVG E;  2OYB O;  1M90 G;  1Q81 G;  3CC4 E;  4U67 E;  3G6E E;  2OL8 O;  1P4P A;  1OSP O;  3CCR E;  1KC8 G;  5DM7 E;  4IO9 E;  1YI2 E;  2ZJQ E;  1K9M G;  3CXC E;  2ZJR E;  2OY8 A;  4WFB E;  3PIO E;  1VQO E;  2OTL E;  1Q86 G;  3I56 E;  3CD6 E;  1KD1 G;  1VQ4 E;  1YIJ E;  3CME E;  2OY1 O;  3CPW E;  2G8C O;  1YJ9 E;  2HKD A;  4WFA E;  5JVH E;  3IG9 A;  5MLC H;  4IOC E;  2OY7 A;  1FJ1 E;  2FKG A;  2CQL A;  1YIT E;  5HL7 E;  1NJI G;  5DM6 E;  3CKG A;  3CCS E;  5GAG G;  3DLL E;  1VQ9 E;  2OTJ E;  2FKJ A;  3G4S E;  5GAD G;  1Q7Y G;  3CKF A;  5B11 O;  5GAH G;  1VQM E;  3CCQ E;  1VQ8 E;  5AN9 B;  3CCM E;  5B10 O;  3J7Z G;  1K8A G;  1VQ5 E;  1Q82 G;  3CC7 E;  4IOA E;  3IGE A;  1QVF E;  1W2B E;  2OL6 O;  3CCJ E;  3CMA E;  5JVG E;  2I5Z O;  4WCE E;  3PIP E;  2PI3 O;  5B2A O;  1N8R G;  1JJ2 E;  1KQS E;  1RJL C;  1YJN E;  2QA4 E;  1VQK E;  3CCL E;  3CC2 E;  1YJW E;  3CCV E;  1K73 G;  2QEX E;  3OW2 E;  5GAE G;  2I5V O;  1M1K G;  1S72 E;  2AF5 A;  1VQL E;  2OL7 A;  3AUM O;  3CCE E;  1VQ7 E;  1VQ6 E;  3EC5 A;  3G71 E;  5B3M O;  5H1S I;  2OY5 O;  4WFN E;  3CCU E;  1VQP E;  4WF9 E;  4UY8 G;  2ZJP E;  3CF5 E;  1YHQ E;  1VQN E; 
#chains in the Genus database with same CATH homology
 3I55 E;  1RL6 A;  1QVG E;  1M90 G;  1Q81 G;  3CC4 E;  4U67 E;  3G6E E;  3CCR E;  1KC8 G;  5DM7 E;  4IO9 E;  1YI2 E;  2ZJQ E;  1K9M G;  3CXC E;  2ZJR E;  4WFB E;  3PIO E;  1VQO E;  2OTL E;  1Q86 G;  3I56 E;  3CD6 E;  1KD1 G;  1VQ4 E;  1YIJ E;  3CME E;  3CPW E;  1YJ9 E;  4WFA E;  5JVH E;  5MLC H;  4IOC E;  2CQL A;  1YIT E;  5HL7 E;  1NJI G;  5DM6 E;  3CCS E;  5GAG G;  3DLL E;  1VQ9 E;  2OTJ E;  3G4S E;  5GAD G;  1Q7Y G;  5GAH G;  1VQM E;  3CCQ E;  1VQ8 E;  5AN9 B;  3CCM E;  3J7Z G;  1K8A G;  1VQ5 E;  1Q82 G;  3CC7 E;  4IOA E;  1QVF E;  1W2B E;  3CCJ E;  3CMA E;  5JVG E;  4WCE E;  3PIP E;  1N8R G;  1JJ2 E;  1KQS E;  1YJN E;  2QA4 E;  1VQK E;  3CCL E;  3CC2 E;  1YJW E;  3CCV E;  1K73 G;  2QEX E;  3OW2 E;  1M1K G;  5GAE G;  1S72 E;  1VQL E;  3CCE E;  1VQ7 E;  1VQ6 E;  3G71 E;  5H1S I;  4WFN E;  3CCU E;  1VQP E;  4WF9 E;  4UY8 G;  2ZJP E;  3CF5 E;  1YHQ E;  1VQN E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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