3I7MA

N-terminal domain of xaa-pro dipeptidase from lactobacillus brevis.
Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
134
structure length
134
Chain Sequence
TKLEQIQQWTAQHHASMTYLSNPKTIEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEVEVIKETGWQFPVIGYLDHENPWAMIADQVKQRHVNPEHVAIEKGQLQVARMEALAAQFSAPSFDLDITSFIEHM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-14)S2 (43-47)EMPTYTIV3 (97-100)S1 (19-21)TI3 (103-106)AH2 (24-31)S5 (99-102)S3 (50-57)AH4 (86-93)TIV1 (47-50)AH3 (61-66)S4 (73-76)TI1 (77-80)TI2 (81-84)TIV2 (82-86)3H2 (111-114)3H3 (116-118)TIV4 (119-122)TI5 (108-111)TI4 (104-107)S6 (123-127)3H1 (58-60)AH5 (128-133)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Lactobacillus brevis
publication title X-ray crystal structure of N-terminal domain of Xaa-Pro dipeptidase from Lactobacillus brevis.
rcsb
molecule keywords Xaa-Pro dipeptidase
total genus 39
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2009-07-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3i7mA00
1WL9A 3PEBA 4QR8A 2BWVA 5CDVA 1WLRA 1WN1A 1W7VA 3BIPA 5FCFA 4B28A 3PN9A 1PV9A 1M35A 3IL0A 3BITA 2BWTA 2BWXA 2BWSA 1W2MA 3L24A 3Q6DA 1KP0A 3L7GA 3I7MA 2BWUA 2BWYA 2BHDA 1WY2A 4RZZA 3RVAA 1WL6A 2BHCA 3O5VA 5E5BA 4R60A 4ZWPA 3CB5A 4RGZ1 1JAWA 2V3XA 4ZWOA 3IG4A 4S2TP 4S00A 4RZYA 2HOWA 2BN7A 4FKCA 5CE6A 2BHBA 4ZWUA 5CDEA 2IW2A 1CHMA 4EGEA 3QOCA 4ZNGA 3OVKA 4S01A 1N51A 4PV4A 5CNXA 1WBQA 2BH3A 5CIKA 5FCHA 2BHAA 3BIQA 2V3YA 2OKNA 3CB6A 2V3ZA 3CTZA 1A16A 5E2CA 4S2RP 2BWWA 2ZSGA 3OOOA 5CDLA
chains in the Genus database with same CATH superfamily
1WL9A 3PEBA 4QR8A 2BWVA 5CDVA 1WLRA 1WN1A 1W7VA 3BIPA 5FCFA 4B28A 3PN9A 1PV9A 1M35A 3IL0A 3BITA 2BWTA 2BWXA 2BWSA 1W2MA 3L24A 3Q6DA 1KP0A 3L7GA 3I7MA 2BWUA 2BWYA 2BHDA 1WY2A 4RZZA 3RVAA 1WL6A 2BHCA 3O5VA 5E5BA 4R60A 4ZWPA 3CB5A 4RGZ1 1JAWA 2V3XA 4ZWOA 3IG4A 4S2TP 4S00A 4RZYA 2HOWA 2BN7A 4FKCA 5CE6A 2BHBA 4ZWUA 5CDEA 2IW2A 1CHMA 4EGEA 3QOCA 4ZNGA 3OVKA 4S01A 1N51A 4PV4A 5CNXA 1WBQA 2BH3A 5CIKA 5FCHA 2BHAA 3BIQA 2V3YA 2OKNA 3CB6A 2V3ZA 3CTZA 1A16A 5E2CA 4S2RP 2BWWA 2ZSGA 3OOOA 5CDLA
chains in the Genus database with same CATH topology
1WL9A 3PEBA 4QR8A 2BWVA 5CDVA 1WLRA 1WN1A 1W7VA 3BIPA 5FCFA 4B28A 3PN9A 1PV9A 1M35A 3IL0A 3BITA 2BWTA 2BWXA 2BWSA 1W2MA 3L24A 3Q6DA 1KP0A 3L7GA 3I7MA 2BWUA 2BWYA 2BHDA 1WY2A 4RZZA 3RVAA 1WL6A 2BHCA 3O5VA 5E5BA 4R60A 4ZWPA 3CB5A 4RGZ1 1JAWA 2V3XA 4ZWOA 3IG4A 4S2TP 4S00A 4RZYA 2HOWA 2BN7A 4FKCA 5CE6A 2BHBA 4ZWUA 5CDEA 2IW2A 1CHMA 4EGEA 3QOCA 4ZNGA 3OVKA 4S01A 1N51A 4PV4A 5CNXA 1WBQA 2BH3A 5CIKA 5FCHA 2BHAA 3BIQA 2V3YA 2OKNA 3CB6A 2V3ZA 3CTZA 1A16A 5E2CA 4S2RP 2BWWA 2ZSGA 3OOOA 5CDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WL9 A;  3PEB A;  4QR8 A;  2BWV A;  5CDV A;  1WLR A;  1WN1 A;  1W7V A;  3BIP A;  5FCF A;  4B28 A;  3PN9 A;  1PV9 A;  1M35 A;  3IL0 A;  3BIT A;  2BWT A;  2BWX A;  2BWS A;  1W2M A;  3L24 A;  3Q6D A;  1KP0 A;  3L7G A;  3I7M A;  2BWU A;  2BWY A;  2BHD A;  1WY2 A;  4RZZ A;  3RVA A;  1WL6 A;  2BHC A;  3O5V A;  5E5B A;  4R60 A;  4ZWP A;  3CB5 A;  4RGZ 1;  1JAW A;  2V3X A;  4ZWO A;  3IG4 A;  4S2T P;  4S00 A;  4RZY A;  2HOW A;  2BN7 A;  4FKC A;  5CE6 A;  2BHB A;  4ZWU A;  5CDE A;  2IW2 A;  1CHM A;  4EGE A;  3QOC A;  4ZNG A;  3OVK A;  4S01 A;  1N51 A;  4PV4 A;  5CNX A;  1WBQ A;  2BH3 A;  5CIK A;  5FCH A;  2BHA A;  3BIQ A;  2V3Y A;  2OKN A;  3CB6 A;  2V3Z A;  3CTZ A;  1A16 A;  5E2C A;  4S2R P;  2BWW A;  2ZSG A;  3OOO A;  5CDL A; 
#chains in the Genus database with same CATH topology
 1WL9 A;  3PEB A;  4QR8 A;  2BWV A;  5CDV A;  1WLR A;  1WN1 A;  1W7V A;  3BIP A;  5FCF A;  4B28 A;  3PN9 A;  1PV9 A;  1M35 A;  3IL0 A;  3BIT A;  2BWT A;  2BWX A;  2BWS A;  1W2M A;  3L24 A;  3Q6D A;  1KP0 A;  3L7G A;  3I7M A;  2BWU A;  2BWY A;  2BHD A;  1WY2 A;  4RZZ A;  3RVA A;  1WL6 A;  2BHC A;  3O5V A;  5E5B A;  4R60 A;  4ZWP A;  3CB5 A;  4RGZ 1;  1JAW A;  2V3X A;  4ZWO A;  3IG4 A;  4S2T P;  4S00 A;  4RZY A;  2HOW A;  2BN7 A;  4FKC A;  5CE6 A;  2BHB A;  4ZWU A;  5CDE A;  2IW2 A;  1CHM A;  4EGE A;  3QOC A;  4ZNG A;  3OVK A;  4S01 A;  1N51 A;  4PV4 A;  5CNX A;  1WBQ A;  2BH3 A;  5CIK A;  5FCH A;  2BHA A;  3BIQ A;  2V3Y A;  2OKN A;  3CB6 A;  2V3Z A;  3CTZ A;  1A16 A;  5E2C A;  4S2R P;  2BWW A;  2ZSG A;  3OOO A;  5CDL A; 
#chains in the Genus database with same CATH homology
 1WL9 A;  3PEB A;  4QR8 A;  2BWV A;  5CDV A;  1WLR A;  1WN1 A;  1W7V A;  3BIP A;  5FCF A;  4B28 A;  3PN9 A;  1PV9 A;  1M35 A;  3IL0 A;  3BIT A;  2BWT A;  2BWX A;  2BWS A;  1W2M A;  3L24 A;  3Q6D A;  1KP0 A;  3L7G A;  3I7M A;  2BWU A;  2BWY A;  2BHD A;  1WY2 A;  4RZZ A;  3RVA A;  1WL6 A;  2BHC A;  3O5V A;  5E5B A;  4R60 A;  4ZWP A;  3CB5 A;  4RGZ 1;  1JAW A;  2V3X A;  4ZWO A;  3IG4 A;  4S2T P;  4S00 A;  4RZY A;  2HOW A;  2BN7 A;  4FKC A;  5CE6 A;  2BHB A;  4ZWU A;  5CDE A;  2IW2 A;  1CHM A;  4EGE A;  3QOC A;  4ZNG A;  3OVK A;  4S01 A;  1N51 A;  4PV4 A;  5CNX A;  1WBQ A;  2BH3 A;  5CIK A;  5FCH A;  2BHA A;  3BIQ A;  2V3Y A;  2OKN A;  3CB6 A;  2V3Z A;  3CTZ A;  1A16 A;  5E2C A;  4S2R P;  2BWW A;  2ZSG A;  3OOO A;  5CDL A; 
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