1PV9A

Prolidase from pyrococcus furiosus
Total Genus 112
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
338
structure length
337
Chain Sequence
b'LVKFMDENSIDRVFIAKPVNVYYFSGTSPLGGGYIIVDGDEATLYVPELEYEMAKEESKLPVVKFKKFDEIYEILKNTETLGIEGTLSYSMVENFKEKSVKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAKRLTKTER'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Xaa-Pro dipeptidase
publication title Structure of the Prolidase from Pyrococcus furiosus.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Hydrolase
total genus 112
structure length 337
sequence length 338
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 1pv9A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1pv9A02
3QOCA 2NQ6A 2BWWA 2MATA 4U70A 3RORA 4EGEA 1KQ9A 1WL6A 4U69A 2GGBA 3L7GA 4ZWUA 2BB7A 5D6FA 2GG8A 3BIQA 2GG3A 2GU5A 3PN9A 3FMRA 4OOKA 1WY2A 4U75A 1C23A 4A6VA 3IG4A 1KQ0A 4FLLA 2B3KA 4IKRA 3IU8A 4S01A 1R58A 5E5BA 2B3LA 1XGNA 2GG2A 2BHBA 3CB5A 3IU7A 2BWYA 4FLIA 1WL9A 2BHCA 3OVKA 4U6EA 4U71A 4PNCA 3TB5A 2B3HA 2EA2A 4RZYA 5FCFA 2EA4A 4IKTA 5JFRA 3D27A 3TAVA 1C24A 4ZNGA 2P9AA 1C21A 2GG7A 4U6ZA 1XGMA 4U6CA 4RGZ1 4IF7A 4IKSA 2GU6A 2BHDA 1N51A 4IPAA 5CIKA 1A16A 1BN5A 1R5GA 4KM3A 2GG0A 5JI6A 4FO8A 4QR8A 1O0XA 1YW8A 1YJ3A 4IDYA 3MATA 2GG9A 1YVMA 2BWSA 5D6EA 2P98A 4FUKA 3O5VA 4HXXA 2EVMA 3BIPA 4RZZA 3BITA 4ZWOA 1YW7A 3PKDA 3L24A 2Q8KA 3S6BA 1B6AA 4Z7MA 2ZSGA 3PKBA 4FLKA 2GU7A 2GU4A 4IU6A 1CHMA 1C27A 2GGCA 2GG5A 1QZYA 3IU9A 1KP0A 2Q92A 3MR1A 3PEBA 4FKCA 1QXZA 1B59A 1XGOA 2DFIA 4JUQA 1C22A 1YW9A 1XGSA 5CDEA 4MATA 1PV9A 2Q93A 2BWUA 2BWXA 2OKNA 4U1BA 2V3ZA 2BN7A 3RVAA 2EVCA 5E2CA 4IECA 4A6WA 2HOWA 2GZ5A 2OAZA 2V6CA 4FO7A 4S00A 5JHUA 3OOOA 2V3XA 5CDLA 1WN1A 3PKEA 4B28A 1QXWA 2GA2A 4ZWPA 3FMQA 4U6WA 4U6JA 5CDVA 1W7VA 2IW2A 1XNZA 2Q94A 3Q6DA 1R5HA 2V3YA 2Q96A 2GTXA 5CNXA 2EVOA 1W2MA 4R60A 1M35A 5CLSA 4FLJA 2BHAA 1WBQA 4IKUA 2NQ7A 1WKMA 2ADUA 3MX6A 5CE6A 5FCHA 2Q95A 1MATA 1Y1NA 3CB6A 3PKAA 1QXYA 4S2TP 3IL0A 4S2RP 3FM3A 4PV4A 2BWTA 1JAWA 3CTZA 3PKCA 2G6PA 3I7MA 2BWVA 1WLRA 4U76A 2BH3A 1BOAA 4U73A 2P99A
chains in the Genus database with same CATH superfamily
3QOCA 2NQ6A 2BWWA 2MATA 4U70A 3RORA 4EGEA 1KQ9A 1WL6A 4U69A 2GGBA 3L7GA 4ZWUA 2BB7A 5D6FA 2GG8A 3BIQA 2GG3A 2GU5A 3PN9A 3FMRA 4OOKA 1WY2A 4U75A 1C23A 4A6VA 3IG4A 1KQ0A 4FLLA 2B3KA 4IKRA 3IU8A 4S01A 1R58A 5E5BA 2B3LA 1XGNA 2GG2A 2BHBA 3CB5A 3IU7A 2BWYA 4FLIA 1WL9A 2BHCA 3OVKA 4U6EA 4U71A 4PNCA 3TB5A 2B3HA 2EA2A 4RZYA 5FCFA 2EA4A 4IKTA 5JFRA 3D27A 3TAVA 1C24A 4ZNGA 2P9AA 1C21A 2GG7A 4U6ZA 1XGMA 4U6CA 4RGZ1 4IF7A 4IKSA 2GU6A 2BHDA 1N51A 4IPAA 5CIKA 1A16A 1BN5A 1R5GA 4KM3A 2GG0A 5JI6A 4FO8A 4QR8A 1O0XA 1YW8A 1YJ3A 4IDYA 3MATA 2GG9A 1YVMA 2BWSA 5D6EA 2P98A 4FUKA 3O5VA 4HXXA 2EVMA 3BIPA 4RZZA 3BITA 4ZWOA 1YW7A 3PKDA 3L24A 2Q8KA 3S6BA 1B6AA 4Z7MA 2ZSGA 3PKBA 4FLKA 2GU7A 2GU4A 4IU6A 1CHMA 1C27A 2GGCA 2GG5A 1QZYA 3IU9A 1KP0A 2Q92A 3MR1A 3PEBA 4FKCA 1QXZA 1B59A 1XGOA 2DFIA 4JUQA 1C22A 1YW9A 1XGSA 5CDEA 4MATA 1PV9A 2Q93A 2BWUA 2BWXA 2OKNA 4U1BA 2V3ZA 2BN7A 3RVAA 2EVCA 5E2CA 4IECA 4A6WA 2HOWA 2GZ5A 2OAZA 2V6CA 4FO7A 4S00A 5JHUA 3OOOA 2V3XA 5CDLA 1WN1A 3PKEA 4B28A 1QXWA 2GA2A 4ZWPA 3FMQA 4U6WA 4U6JA 5CDVA 1W7VA 2IW2A 1XNZA 2Q94A 3Q6DA 1R5HA 2V3YA 2Q96A 2GTXA 5CNXA 2EVOA 1W2MA 4R60A 1M35A 5CLSA 4FLJA 2BHAA 1WBQA 4IKUA 2NQ7A 1WKMA 2ADUA 3MX6A 5CE6A 5FCHA 2Q95A 1MATA 1Y1NA 3CB6A 3PKAA 1QXYA 4S2TP 3IL0A 4S2RP 3FM3A 4PV4A 2BWTA 1JAWA 3CTZA 3PKCA 2G6PA 3I7MA 2BWVA 1WLRA 4U76A 2BH3A 1BOAA 4U73A 2P99A
chains in the Genus database with same CATH topology
3QOCA 2NQ6A 2BWWA 2MATA 4U70A 3RORA 4EGEA 1KQ9A 1WL6A 4U69A 2GGBA 3L7GA 4ZWUA 2BB7A 5D6FA 2GG8A 3BIQA 2GG3A 2GU5A 3PN9A 3FMRA 4OOKA 1WY2A 4U75A 1C23A 4A6VA 3IG4A 1KQ0A 4FLLA 2B3KA 4IKRA 3IU8A 4S01A 1R58A 5E5BA 2B3LA 1XGNA 2GG2A 2BHBA 3CB5A 3IU7A 2BWYA 4FLIA 1WL9A 2BHCA 3OVKA 4U6EA 4U71A 4PNCA 3TB5A 2B3HA 2EA2A 4RZYA 5FCFA 2EA4A 4IKTA 5JFRA 3D27A 3TAVA 1C24A 4ZNGA 2P9AA 1C21A 2GG7A 4U6ZA 1XGMA 4U6CA 4RGZ1 4IF7A 4IKSA 2GU6A 2BHDA 1N51A 4IPAA 5CIKA 1A16A 1BN5A 1R5GA 4KM3A 2GG0A 5JI6A 4FO8A 4QR8A 1O0XA 1YW8A 1YJ3A 4IDYA 3MATA 2GG9A 1YVMA 2BWSA 5D6EA 2P98A 4FUKA 3O5VA 4HXXA 2EVMA 3BIPA 4RZZA 3BITA 4ZWOA 1YW7A 3PKDA 3L24A 2Q8KA 3S6BA 1B6AA 4Z7MA 2ZSGA 3PKBA 4FLKA 2GU7A 2GU4A 4IU6A 1CHMA 1C27A 2GGCA 2GG5A 1QZYA 3IU9A 1KP0A 2Q92A 3MR1A 3PEBA 4FKCA 1QXZA 1B59A 1XGOA 2DFIA 4JUQA 1C22A 1YW9A 1XGSA 5CDEA 4MATA 1PV9A 2Q93A 2BWUA 2BWXA 2OKNA 4U1BA 2V3ZA 2BN7A 3RVAA 2EVCA 5E2CA 4IECA 4A6WA 2HOWA 2GZ5A 2OAZA 2V6CA 4FO7A 4S00A 5JHUA 3OOOA 2V3XA 5CDLA 1WN1A 3PKEA 4B28A 1QXWA 2GA2A 4ZWPA 3FMQA 4U6WA 4U6JA 5CDVA 1W7VA 2IW2A 1XNZA 2Q94A 3Q6DA 1R5HA 2V3YA 2Q96A 2GTXA 5CNXA 2EVOA 1W2MA 4R60A 1M35A 5CLSA 4FLJA 2BHAA 1WBQA 4IKUA 2NQ7A 1WKMA 2ADUA 3MX6A 5CE6A 5FCHA 2Q95A 1MATA 1Y1NA 3CB6A 3PKAA 1QXYA 4S2TP 3IL0A 4S2RP 3FM3A 4PV4A 2BWTA 1JAWA 3CTZA 3PKCA 2G6PA 3I7MA 2BWVA 1WLRA 4U76A 2BH3A 1BOAA 4U73A 2P99A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QOC A;  2NQ6 A;  2BWW A;  2MAT A;  4U70 A;  3ROR A;  4EGE A;  1KQ9 A;  1WL6 A;  4U69 A;  2GGB A;  3L7G A;  4ZWU A;  2BB7 A;  5D6F A;  2GG8 A;  3BIQ A;  2GG3 A;  2GU5 A;  3PN9 A;  3FMR A;  4OOK A;  1WY2 A;  4U75 A;  1C23 A;  4A6V A;  3IG4 A;  1KQ0 A;  4FLL A;  2B3K A;  4IKR A;  3IU8 A;  4S01 A;  1R58 A;  5E5B A;  2B3L A;  1XGN A;  2GG2 A;  2BHB A;  3CB5 A;  3IU7 A;  2BWY A;  4FLI A;  1WL9 A;  2BHC A;  3OVK A;  4U6E A;  4U71 A;  4PNC A;  3TB5 A;  2B3H A;  2EA2 A;  4RZY A;  5FCF A;  2EA4 A;  4IKT A;  5JFR A;  3D27 A;  3TAV A;  1C24 A;  4ZNG A;  2P9A A;  1C21 A;  2GG7 A;  4U6Z A;  1XGM A;  4U6C A;  4RGZ 1;  4IF7 A;  4IKS A;  2GU6 A;  2BHD A;  1N51 A;  4IPA A;  5CIK A;  1A16 A;  1BN5 A;  1R5G A;  4KM3 A;  2GG0 A;  5JI6 A;  4FO8 A;  4QR8 A;  1O0X A;  1YW8 A;  1YJ3 A;  4IDY A;  3MAT A;  2GG9 A;  1YVM A;  2BWS A;  5D6E A;  2P98 A;  4FUK A;  3O5V A;  4HXX A;  2EVM A;  3BIP A;  4RZZ A;  3BIT A;  4ZWO A;  1YW7 A;  3PKD A;  3L24 A;  2Q8K A;  3S6B A;  1B6A A;  4Z7M A;  2ZSG A;  3PKB A;  4FLK A;  2GU7 A;  2GU4 A;  4IU6 A;  1CHM A;  1C27 A;  2GGC A;  2GG5 A;  1QZY A;  3IU9 A;  1KP0 A;  2Q92 A;  3MR1 A;  3PEB A;  4FKC A;  1QXZ A;  1B59 A;  1XGO A;  2DFI A;  4JUQ A;  1C22 A;  1YW9 A;  1XGS A;  5CDE A;  4MAT A;  1PV9 A;  2Q93 A;  2BWU A;  2BWX A;  2OKN A;  4U1B A;  2V3Z A;  2BN7 A;  3RVA A;  2EVC A;  5E2C A;  4IEC A;  4A6W A;  2HOW A;  2GZ5 A;  2OAZ A;  2V6C A;  4FO7 A;  4S00 A;  5JHU A;  3OOO A;  2V3X A;  5CDL A;  1WN1 A;  3PKE A;  4B28 A;  1QXW A;  2GA2 A;  4ZWP A;  3FMQ A;  4U6W A;  4U6J A;  5CDV A;  1W7V A;  2IW2 A;  1XNZ A;  2Q94 A;  3Q6D A;  1R5H A;  2V3Y A;  2Q96 A;  2GTX A;  5CNX A;  2EVO A;  1W2M A;  4R60 A;  1M35 A;  5CLS A;  4FLJ A;  2BHA A;  1WBQ A;  4IKU A;  2NQ7 A;  1WKM A;  2ADU A;  3MX6 A;  5CE6 A;  5FCH A;  2Q95 A;  1MAT A;  1Y1N A;  3CB6 A;  3PKA A;  1QXY A;  4S2T P;  3IL0 A;  4S2R P;  3FM3 A;  4PV4 A;  2BWT A;  1JAW A;  3CTZ A;  3PKC A;  2G6P A;  3I7M A;  2BWV A;  1WLR A;  4U76 A;  2BH3 A;  1BOA A;  4U73 A;  2P99 A; 
#chains in the Genus database with same CATH topology
 3QOC A;  2NQ6 A;  2BWW A;  2MAT A;  4U70 A;  3ROR A;  4EGE A;  1KQ9 A;  1WL6 A;  4U69 A;  2GGB A;  3L7G A;  4ZWU A;  2BB7 A;  5D6F A;  2GG8 A;  3BIQ A;  2GG3 A;  2GU5 A;  3PN9 A;  3FMR A;  4OOK A;  1WY2 A;  4U75 A;  1C23 A;  4A6V A;  3IG4 A;  1KQ0 A;  4FLL A;  2B3K A;  4IKR A;  3IU8 A;  4S01 A;  1R58 A;  5E5B A;  2B3L A;  1XGN A;  2GG2 A;  2BHB A;  3CB5 A;  3IU7 A;  2BWY A;  4FLI A;  1WL9 A;  2BHC A;  3OVK A;  4U6E A;  4U71 A;  4PNC A;  3TB5 A;  2B3H A;  2EA2 A;  4RZY A;  5FCF A;  2EA4 A;  4IKT A;  5JFR A;  3D27 A;  3TAV A;  1C24 A;  4ZNG A;  2P9A A;  1C21 A;  2GG7 A;  4U6Z A;  1XGM A;  4U6C A;  4RGZ 1;  4IF7 A;  4IKS A;  2GU6 A;  2BHD A;  1N51 A;  4IPA A;  5CIK A;  1A16 A;  1BN5 A;  1R5G A;  4KM3 A;  2GG0 A;  5JI6 A;  4FO8 A;  4QR8 A;  1O0X A;  1YW8 A;  1YJ3 A;  4IDY A;  3MAT A;  2GG9 A;  1YVM A;  2BWS A;  5D6E A;  2P98 A;  4FUK A;  3O5V A;  4HXX A;  2EVM A;  3BIP A;  4RZZ A;  3BIT A;  4ZWO A;  1YW7 A;  3PKD A;  3L24 A;  2Q8K A;  3S6B A;  1B6A A;  4Z7M A;  2ZSG A;  3PKB A;  4FLK A;  2GU7 A;  2GU4 A;  4IU6 A;  1CHM A;  1C27 A;  2GGC A;  2GG5 A;  1QZY A;  3IU9 A;  1KP0 A;  2Q92 A;  3MR1 A;  3PEB A;  4FKC A;  1QXZ A;  1B59 A;  1XGO A;  2DFI A;  4JUQ A;  1C22 A;  1YW9 A;  1XGS A;  5CDE A;  4MAT A;  1PV9 A;  2Q93 A;  2BWU A;  2BWX A;  2OKN A;  4U1B A;  2V3Z A;  2BN7 A;  3RVA A;  2EVC A;  5E2C A;  4IEC A;  4A6W A;  2HOW A;  2GZ5 A;  2OAZ A;  2V6C A;  4FO7 A;  4S00 A;  5JHU A;  3OOO A;  2V3X A;  5CDL A;  1WN1 A;  3PKE A;  4B28 A;  1QXW A;  2GA2 A;  4ZWP A;  3FMQ A;  4U6W A;  4U6J A;  5CDV A;  1W7V A;  2IW2 A;  1XNZ A;  2Q94 A;  3Q6D A;  1R5H A;  2V3Y A;  2Q96 A;  2GTX A;  5CNX A;  2EVO A;  1W2M A;  4R60 A;  1M35 A;  5CLS A;  4FLJ A;  2BHA A;  1WBQ A;  4IKU A;  2NQ7 A;  1WKM A;  2ADU A;  3MX6 A;  5CE6 A;  5FCH A;  2Q95 A;  1MAT A;  1Y1N A;  3CB6 A;  3PKA A;  1QXY A;  4S2T P;  3IL0 A;  4S2R P;  3FM3 A;  4PV4 A;  2BWT A;  1JAW A;  3CTZ A;  3PKC A;  2G6P A;  3I7M A;  2BWV A;  1WLR A;  4U76 A;  2BH3 A;  1BOA A;  4U73 A;  2P99 A; 
#chains in the Genus database with same CATH homology
 3QOC A;  2NQ6 A;  2BWW A;  2MAT A;  4U70 A;  3ROR A;  4EGE A;  1KQ9 A;  1WL6 A;  4U69 A;  2GGB A;  3L7G A;  4ZWU A;  2BB7 A;  5D6F A;  2GG8 A;  3BIQ A;  2GG3 A;  2GU5 A;  3PN9 A;  3FMR A;  4OOK A;  1WY2 A;  4U75 A;  1C23 A;  4A6V A;  3IG4 A;  1KQ0 A;  4FLL A;  2B3K A;  4IKR A;  3IU8 A;  4S01 A;  1R58 A;  5E5B A;  2B3L A;  1XGN A;  2GG2 A;  2BHB A;  3CB5 A;  3IU7 A;  2BWY A;  4FLI A;  1WL9 A;  2BHC A;  3OVK A;  4U6E A;  4U71 A;  4PNC A;  3TB5 A;  2B3H A;  2EA2 A;  4RZY A;  5FCF A;  2EA4 A;  4IKT A;  5JFR A;  3D27 A;  3TAV A;  1C24 A;  4ZNG A;  2P9A A;  1C21 A;  2GG7 A;  4U6Z A;  1XGM A;  4U6C A;  4RGZ 1;  4IF7 A;  4IKS A;  2GU6 A;  2BHD A;  1N51 A;  4IPA A;  5CIK A;  1A16 A;  1BN5 A;  1R5G A;  4KM3 A;  2GG0 A;  5JI6 A;  4FO8 A;  4QR8 A;  1O0X A;  1YW8 A;  1YJ3 A;  4IDY A;  3MAT A;  2GG9 A;  1YVM A;  2BWS A;  5D6E A;  2P98 A;  4FUK A;  3O5V A;  4HXX A;  2EVM A;  3BIP A;  4RZZ A;  3BIT A;  4ZWO A;  1YW7 A;  3PKD A;  3L24 A;  2Q8K A;  3S6B A;  1B6A A;  4Z7M A;  2ZSG A;  3PKB A;  4FLK A;  2GU7 A;  2GU4 A;  4IU6 A;  1CHM A;  1C27 A;  2GGC A;  2GG5 A;  1QZY A;  3IU9 A;  1KP0 A;  2Q92 A;  3MR1 A;  3PEB A;  4FKC A;  1QXZ A;  1B59 A;  1XGO A;  2DFI A;  4JUQ A;  1C22 A;  1YW9 A;  1XGS A;  5CDE A;  4MAT A;  1PV9 A;  2Q93 A;  2BWU A;  2BWX A;  2OKN A;  4U1B A;  2V3Z A;  2BN7 A;  3RVA A;  2EVC A;  5E2C A;  4IEC A;  4A6W A;  2HOW A;  2GZ5 A;  2OAZ A;  2V6C A;  4FO7 A;  4S00 A;  5JHU A;  3OOO A;  2V3X A;  5CDL A;  1WN1 A;  3PKE A;  4B28 A;  1QXW A;  2GA2 A;  4ZWP A;  3FMQ A;  4U6W A;  4U6J A;  5CDV A;  1W7V A;  2IW2 A;  1XNZ A;  2Q94 A;  3Q6D A;  1R5H A;  2V3Y A;  2Q96 A;  2GTX A;  5CNX A;  2EVO A;  1W2M A;  4R60 A;  1M35 A;  5CLS A;  4FLJ A;  2BHA A;  1WBQ A;  4IKU A;  2NQ7 A;  1WKM A;  2ADU A;  3MX6 A;  5CE6 A;  5FCH A;  2Q95 A;  1MAT A;  1Y1N A;  3CB6 A;  3PKA A;  1QXY A;  4S2T P;  3IL0 A;  4S2R P;  3FM3 A;  4PV4 A;  2BWT A;  1JAW A;  3CTZ A;  3PKC A;  2G6P A;  3I7M A;  2BWV A;  1WLR A;  4U76 A;  2BH3 A;  1BOA A;  4U73 A;  2P99 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...