1PV9A

Prolidase from pyrococcus furiosus
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
338
structure length
337
Chain Sequence
LVKFMDENSIDRVFIAKPVNVYYFSGTSPLGGGYIIVDGDEATLYVPELEYEMAKEESKLPVVKFKKFDEIYEILKNTETLGIEGTLSYSMVENFKEKSVKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAKRLTKTER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Xaa-Pro dipeptidase
publication title Structure of the Prolidase from Pyrococcus furiosus.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Hydrolase
total genus 112
structure length 337
sequence length 338
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 1pv9A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1pv9A02
1QXZA 2HOWA 2Q94A 1C24A 4PNCA 3PKEA 2GA2A 1B6AA 4S00A 1B59A 5JHUA 4EGEA 1R58A 1O0XA 4U71A 1N51A 2BWVA 3IG4A 2BHBA 2GGCA 3BIPA 1PV9A 2Q93A 3L24A 1WL9A 2BH3A 2BHCA 4S01A 1WKMA 2P98A 4B28A 1KQ9A 3BIQA 2NQ7A 4U6EA 4IKRA 4IKTA 3QOCA 1A16A 4S2TP 5FCHA 1KQ0A 3IL0A 4FLJA 2B3KA 5CDLA 2DFIA 3MATA 4IU6A 5CDVA 4KM3A 4OOKA 1YW8A 3D27A 2IW2A 1YVMA 5JFRA 4U6CA 2GU5A 4ZWOA 2P99A 4FO7A 3PKCA 3OOOA 3TAVA 2Q92A 2EVCA 2GZ5A 1XGOA 1C23A 1WBQA 5FCFA 3MX6A 4IF7A 1KP0A 2GG8A 1WL6A 5E5BA 2GGBA 4IDYA 4RZZA 2BN7A 2ZSGA 3MR1A 2BWTA 4IKUA 2OKNA 2G6PA 1QXYA 3CTZA 2GG9A 4ZWPA 1R5HA 2GU7A 3FM3A 1XNZA 3TB5A 2V3XA 2V3YA 2GG7A 4ZNGA 5D6EA 4Z7MA 3FMRA 2GU6A 3Q6DA 2V3ZA 1C27A 2GTXA 1XGMA 3PN9A 1W2MA 2BWYA 5CE6A 2NQ6A 1R5GA 1BOAA 4FLLA 5D6FA 2EA2A 1QXWA 3PKBA 2P9AA 3I7MA 2ADUA 2Q8KA 4A6WA 2BHAA 1YW9A 3RVAA 3RORA 3S6BA 2B3HA 4FLIA 4U6JA 2GG5A 2OAZA 1BN5A 5CDEA 2GG0A 1Y1NA 4JUQA 2BHDA 4PV4A 2B3LA 4RZYA 1C22A 4MATA 1M35A 4S2RP 2BWUA 3PKAA 1WN1A 1QZYA 4HXXA 4IECA 1CHMA 4U6ZA 4U1BA 2GU4A 1YJ3A 2BWXA 3IU7A 2GG3A 1WLRA 4R60A 5CNXA 4RGZ1 1XGNA 4FUKA 3FMQA 4QR8A 1JAWA 2BWWA 5JI6A 3L7GA 4U70A 3OVKA 5E2CA 3O5VA 2V6CA 4FO8A 4U75A 5CLSA 3CB6A 3IU8A 4U73A 2EA4A 4U69A 4U6WA 4IPAA 2EVOA 1WY2A 1YW7A 2EVMA 3PEBA 2MATA 2Q96A 4A6VA 1W7VA 5CIKA 1MATA 2GG2A 3CB5A 3BITA 4FKCA 4FLKA 2Q95A 2BWSA 1XGSA 4ZWUA 4IKSA 4U76A 3IU9A 3PKDA 1C21A 2BB7A
chains in the Genus database with same CATH superfamily
1QXZA 2HOWA 2Q94A 1C24A 4PNCA 3PKEA 2GA2A 1B6AA 4S00A 1B59A 5JHUA 4EGEA 1R58A 1O0XA 4U71A 1N51A 2BWVA 3IG4A 2BHBA 2GGCA 3BIPA 1PV9A 2Q93A 3L24A 1WL9A 2BH3A 2BHCA 4S01A 1WKMA 2P98A 4B28A 1KQ9A 3BIQA 2NQ7A 4U6EA 4IKRA 4IKTA 3QOCA 1A16A 4S2TP 5FCHA 1KQ0A 3IL0A 4FLJA 2B3KA 5CDLA 2DFIA 3MATA 4IU6A 5CDVA 4KM3A 4OOKA 1YW8A 3D27A 2IW2A 1YVMA 5JFRA 4U6CA 2GU5A 4ZWOA 2P99A 4FO7A 3PKCA 3OOOA 3TAVA 2Q92A 2EVCA 2GZ5A 1XGOA 1C23A 1WBQA 5FCFA 3MX6A 4IF7A 1KP0A 2GG8A 1WL6A 5E5BA 2GGBA 4IDYA 4RZZA 2BN7A 2ZSGA 3MR1A 2BWTA 4IKUA 2OKNA 2G6PA 1QXYA 3CTZA 2GG9A 4ZWPA 1R5HA 2GU7A 3FM3A 1XNZA 3TB5A 2V3XA 2V3YA 2GG7A 4ZNGA 5D6EA 4Z7MA 3FMRA 2GU6A 3Q6DA 2V3ZA 1C27A 2GTXA 1XGMA 3PN9A 1W2MA 2BWYA 5CE6A 2NQ6A 1R5GA 1BOAA 4FLLA 5D6FA 2EA2A 1QXWA 3PKBA 2P9AA 3I7MA 2ADUA 2Q8KA 4A6WA 2BHAA 1YW9A 3RVAA 3RORA 3S6BA 2B3HA 4FLIA 4U6JA 2GG5A 2OAZA 1BN5A 5CDEA 2GG0A 1Y1NA 4JUQA 2BHDA 4PV4A 2B3LA 4RZYA 1C22A 4MATA 1M35A 4S2RP 2BWUA 3PKAA 1WN1A 1QZYA 4HXXA 4IECA 1CHMA 4U6ZA 4U1BA 2GU4A 1YJ3A 2BWXA 3IU7A 2GG3A 1WLRA 4R60A 5CNXA 4RGZ1 1XGNA 4FUKA 3FMQA 4QR8A 1JAWA 2BWWA 5JI6A 3L7GA 4U70A 3OVKA 5E2CA 3O5VA 2V6CA 4FO8A 4U75A 5CLSA 3CB6A 3IU8A 4U73A 2EA4A 4U69A 4U6WA 4IPAA 2EVOA 1WY2A 1YW7A 2EVMA 3PEBA 2MATA 2Q96A 4A6VA 1W7VA 5CIKA 1MATA 2GG2A 3CB5A 3BITA 4FKCA 4FLKA 2Q95A 2BWSA 1XGSA 4ZWUA 4IKSA 4U76A 3IU9A 3PKDA 1C21A 2BB7A
chains in the Genus database with same CATH topology
1QXZA 2HOWA 2Q94A 1C24A 4PNCA 3PKEA 2GA2A 1B6AA 4S00A 1B59A 5JHUA 4EGEA 1R58A 1O0XA 4U71A 1N51A 2BWVA 3IG4A 2BHBA 2GGCA 3BIPA 1PV9A 2Q93A 3L24A 1WL9A 2BH3A 2BHCA 4S01A 1WKMA 2P98A 4B28A 1KQ9A 3BIQA 2NQ7A 4U6EA 4IKRA 4IKTA 3QOCA 1A16A 4S2TP 5FCHA 1KQ0A 3IL0A 4FLJA 2B3KA 5CDLA 2DFIA 3MATA 4IU6A 5CDVA 4KM3A 4OOKA 1YW8A 3D27A 2IW2A 1YVMA 5JFRA 4U6CA 2GU5A 4ZWOA 2P99A 4FO7A 3PKCA 3OOOA 3TAVA 2Q92A 2EVCA 2GZ5A 1XGOA 1C23A 1WBQA 5FCFA 3MX6A 4IF7A 1KP0A 2GG8A 1WL6A 5E5BA 2GGBA 4IDYA 4RZZA 2BN7A 2ZSGA 3MR1A 2BWTA 4IKUA 2OKNA 2G6PA 1QXYA 3CTZA 2GG9A 4ZWPA 1R5HA 2GU7A 3FM3A 1XNZA 3TB5A 2V3XA 2V3YA 2GG7A 4ZNGA 5D6EA 4Z7MA 3FMRA 2GU6A 3Q6DA 2V3ZA 1C27A 2GTXA 1XGMA 3PN9A 1W2MA 2BWYA 5CE6A 2NQ6A 1R5GA 1BOAA 4FLLA 5D6FA 2EA2A 1QXWA 3PKBA 2P9AA 3I7MA 2ADUA 2Q8KA 4A6WA 2BHAA 1YW9A 3RVAA 3RORA 3S6BA 2B3HA 4FLIA 4U6JA 2GG5A 2OAZA 1BN5A 5CDEA 2GG0A 1Y1NA 4JUQA 2BHDA 4PV4A 2B3LA 4RZYA 1C22A 4MATA 1M35A 4S2RP 2BWUA 3PKAA 1WN1A 1QZYA 4HXXA 4IECA 1CHMA 4U6ZA 4U1BA 2GU4A 1YJ3A 2BWXA 3IU7A 2GG3A 1WLRA 4R60A 5CNXA 4RGZ1 1XGNA 4FUKA 3FMQA 4QR8A 1JAWA 2BWWA 5JI6A 3L7GA 4U70A 3OVKA 5E2CA 3O5VA 2V6CA 4FO8A 4U75A 5CLSA 3CB6A 3IU8A 4U73A 2EA4A 4U69A 4U6WA 4IPAA 2EVOA 1WY2A 1YW7A 2EVMA 3PEBA 2MATA 2Q96A 4A6VA 1W7VA 5CIKA 1MATA 2GG2A 3CB5A 3BITA 4FKCA 4FLKA 2Q95A 2BWSA 1XGSA 4ZWUA 4IKSA 4U76A 3IU9A 3PKDA 1C21A 2BB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QXZ A;  2HOW A;  2Q94 A;  1C24 A;  4PNC A;  3PKE A;  2GA2 A;  1B6A A;  4S00 A;  1B59 A;  5JHU A;  4EGE A;  1R58 A;  1O0X A;  4U71 A;  1N51 A;  2BWV A;  3IG4 A;  2BHB A;  2GGC A;  3BIP A;  1PV9 A;  2Q93 A;  3L24 A;  1WL9 A;  2BH3 A;  2BHC A;  4S01 A;  1WKM A;  2P98 A;  4B28 A;  1KQ9 A;  3BIQ A;  2NQ7 A;  4U6E A;  4IKR A;  4IKT A;  3QOC A;  1A16 A;  4S2T P;  5FCH A;  1KQ0 A;  3IL0 A;  4FLJ A;  2B3K A;  5CDL A;  2DFI A;  3MAT A;  4IU6 A;  5CDV A;  4KM3 A;  4OOK A;  1YW8 A;  3D27 A;  2IW2 A;  1YVM A;  5JFR A;  4U6C A;  2GU5 A;  4ZWO A;  2P99 A;  4FO7 A;  3PKC A;  3OOO A;  3TAV A;  2Q92 A;  2EVC A;  2GZ5 A;  1XGO A;  1C23 A;  1WBQ A;  5FCF A;  3MX6 A;  4IF7 A;  1KP0 A;  2GG8 A;  1WL6 A;  5E5B A;  2GGB A;  4IDY A;  4RZZ A;  2BN7 A;  2ZSG A;  3MR1 A;  2BWT A;  4IKU A;  2OKN A;  2G6P A;  1QXY A;  3CTZ A;  2GG9 A;  4ZWP A;  1R5H A;  2GU7 A;  3FM3 A;  1XNZ A;  3TB5 A;  2V3X A;  2V3Y A;  2GG7 A;  4ZNG A;  5D6E A;  4Z7M A;  3FMR A;  2GU6 A;  3Q6D A;  2V3Z A;  1C27 A;  2GTX A;  1XGM A;  3PN9 A;  1W2M A;  2BWY A;  5CE6 A;  2NQ6 A;  1R5G A;  1BOA A;  4FLL A;  5D6F A;  2EA2 A;  1QXW A;  3PKB A;  2P9A A;  3I7M A;  2ADU A;  2Q8K A;  4A6W A;  2BHA A;  1YW9 A;  3RVA A;  3ROR A;  3S6B A;  2B3H A;  4FLI A;  4U6J A;  2GG5 A;  2OAZ A;  1BN5 A;  5CDE A;  2GG0 A;  1Y1N A;  4JUQ A;  2BHD A;  4PV4 A;  2B3L A;  4RZY A;  1C22 A;  4MAT A;  1M35 A;  4S2R P;  2BWU A;  3PKA A;  1WN1 A;  1QZY A;  4HXX A;  4IEC A;  1CHM A;  4U6Z A;  4U1B A;  2GU4 A;  1YJ3 A;  2BWX A;  3IU7 A;  2GG3 A;  1WLR A;  4R60 A;  5CNX A;  4RGZ 1;  1XGN A;  4FUK A;  3FMQ A;  4QR8 A;  1JAW A;  2BWW A;  5JI6 A;  3L7G A;  4U70 A;  3OVK A;  5E2C A;  3O5V A;  2V6C A;  4FO8 A;  4U75 A;  5CLS A;  3CB6 A;  3IU8 A;  4U73 A;  2EA4 A;  4U69 A;  4U6W A;  4IPA A;  2EVO A;  1WY2 A;  1YW7 A;  2EVM A;  3PEB A;  2MAT A;  2Q96 A;  4A6V A;  1W7V A;  5CIK A;  1MAT A;  2GG2 A;  3CB5 A;  3BIT A;  4FKC A;  4FLK A;  2Q95 A;  2BWS A;  1XGS A;  4ZWU A;  4IKS A;  4U76 A;  3IU9 A;  3PKD A;  1C21 A;  2BB7 A; 
#chains in the Genus database with same CATH topology
 1QXZ A;  2HOW A;  2Q94 A;  1C24 A;  4PNC A;  3PKE A;  2GA2 A;  1B6A A;  4S00 A;  1B59 A;  5JHU A;  4EGE A;  1R58 A;  1O0X A;  4U71 A;  1N51 A;  2BWV A;  3IG4 A;  2BHB A;  2GGC A;  3BIP A;  1PV9 A;  2Q93 A;  3L24 A;  1WL9 A;  2BH3 A;  2BHC A;  4S01 A;  1WKM A;  2P98 A;  4B28 A;  1KQ9 A;  3BIQ A;  2NQ7 A;  4U6E A;  4IKR A;  4IKT A;  3QOC A;  1A16 A;  4S2T P;  5FCH A;  1KQ0 A;  3IL0 A;  4FLJ A;  2B3K A;  5CDL A;  2DFI A;  3MAT A;  4IU6 A;  5CDV A;  4KM3 A;  4OOK A;  1YW8 A;  3D27 A;  2IW2 A;  1YVM A;  5JFR A;  4U6C A;  2GU5 A;  4ZWO A;  2P99 A;  4FO7 A;  3PKC A;  3OOO A;  3TAV A;  2Q92 A;  2EVC A;  2GZ5 A;  1XGO A;  1C23 A;  1WBQ A;  5FCF A;  3MX6 A;  4IF7 A;  1KP0 A;  2GG8 A;  1WL6 A;  5E5B A;  2GGB A;  4IDY A;  4RZZ A;  2BN7 A;  2ZSG A;  3MR1 A;  2BWT A;  4IKU A;  2OKN A;  2G6P A;  1QXY A;  3CTZ A;  2GG9 A;  4ZWP A;  1R5H A;  2GU7 A;  3FM3 A;  1XNZ A;  3TB5 A;  2V3X A;  2V3Y A;  2GG7 A;  4ZNG A;  5D6E A;  4Z7M A;  3FMR A;  2GU6 A;  3Q6D A;  2V3Z A;  1C27 A;  2GTX A;  1XGM A;  3PN9 A;  1W2M A;  2BWY A;  5CE6 A;  2NQ6 A;  1R5G A;  1BOA A;  4FLL A;  5D6F A;  2EA2 A;  1QXW A;  3PKB A;  2P9A A;  3I7M A;  2ADU A;  2Q8K A;  4A6W A;  2BHA A;  1YW9 A;  3RVA A;  3ROR A;  3S6B A;  2B3H A;  4FLI A;  4U6J A;  2GG5 A;  2OAZ A;  1BN5 A;  5CDE A;  2GG0 A;  1Y1N A;  4JUQ A;  2BHD A;  4PV4 A;  2B3L A;  4RZY A;  1C22 A;  4MAT A;  1M35 A;  4S2R P;  2BWU A;  3PKA A;  1WN1 A;  1QZY A;  4HXX A;  4IEC A;  1CHM A;  4U6Z A;  4U1B A;  2GU4 A;  1YJ3 A;  2BWX A;  3IU7 A;  2GG3 A;  1WLR A;  4R60 A;  5CNX A;  4RGZ 1;  1XGN A;  4FUK A;  3FMQ A;  4QR8 A;  1JAW A;  2BWW A;  5JI6 A;  3L7G A;  4U70 A;  3OVK A;  5E2C A;  3O5V A;  2V6C A;  4FO8 A;  4U75 A;  5CLS A;  3CB6 A;  3IU8 A;  4U73 A;  2EA4 A;  4U69 A;  4U6W A;  4IPA A;  2EVO A;  1WY2 A;  1YW7 A;  2EVM A;  3PEB A;  2MAT A;  2Q96 A;  4A6V A;  1W7V A;  5CIK A;  1MAT A;  2GG2 A;  3CB5 A;  3BIT A;  4FKC A;  4FLK A;  2Q95 A;  2BWS A;  1XGS A;  4ZWU A;  4IKS A;  4U76 A;  3IU9 A;  3PKD A;  1C21 A;  2BB7 A; 
#chains in the Genus database with same CATH homology
 1QXZ A;  2HOW A;  2Q94 A;  1C24 A;  4PNC A;  3PKE A;  2GA2 A;  1B6A A;  4S00 A;  1B59 A;  5JHU A;  4EGE A;  1R58 A;  1O0X A;  4U71 A;  1N51 A;  2BWV A;  3IG4 A;  2BHB A;  2GGC A;  3BIP A;  1PV9 A;  2Q93 A;  3L24 A;  1WL9 A;  2BH3 A;  2BHC A;  4S01 A;  1WKM A;  2P98 A;  4B28 A;  1KQ9 A;  3BIQ A;  2NQ7 A;  4U6E A;  4IKR A;  4IKT A;  3QOC A;  1A16 A;  4S2T P;  5FCH A;  1KQ0 A;  3IL0 A;  4FLJ A;  2B3K A;  5CDL A;  2DFI A;  3MAT A;  4IU6 A;  5CDV A;  4KM3 A;  4OOK A;  1YW8 A;  3D27 A;  2IW2 A;  1YVM A;  5JFR A;  4U6C A;  2GU5 A;  4ZWO A;  2P99 A;  4FO7 A;  3PKC A;  3OOO A;  3TAV A;  2Q92 A;  2EVC A;  2GZ5 A;  1XGO A;  1C23 A;  1WBQ A;  5FCF A;  3MX6 A;  4IF7 A;  1KP0 A;  2GG8 A;  1WL6 A;  5E5B A;  2GGB A;  4IDY A;  4RZZ A;  2BN7 A;  2ZSG A;  3MR1 A;  2BWT A;  4IKU A;  2OKN A;  2G6P A;  1QXY A;  3CTZ A;  2GG9 A;  4ZWP A;  1R5H A;  2GU7 A;  3FM3 A;  1XNZ A;  3TB5 A;  2V3X A;  2V3Y A;  2GG7 A;  4ZNG A;  5D6E A;  4Z7M A;  3FMR A;  2GU6 A;  3Q6D A;  2V3Z A;  1C27 A;  2GTX A;  1XGM A;  3PN9 A;  1W2M A;  2BWY A;  5CE6 A;  2NQ6 A;  1R5G A;  1BOA A;  4FLL A;  5D6F A;  2EA2 A;  1QXW A;  3PKB A;  2P9A A;  3I7M A;  2ADU A;  2Q8K A;  4A6W A;  2BHA A;  1YW9 A;  3RVA A;  3ROR A;  3S6B A;  2B3H A;  4FLI A;  4U6J A;  2GG5 A;  2OAZ A;  1BN5 A;  5CDE A;  2GG0 A;  1Y1N A;  4JUQ A;  2BHD A;  4PV4 A;  2B3L A;  4RZY A;  1C22 A;  4MAT A;  1M35 A;  4S2R P;  2BWU A;  3PKA A;  1WN1 A;  1QZY A;  4HXX A;  4IEC A;  1CHM A;  4U6Z A;  4U1B A;  2GU4 A;  1YJ3 A;  2BWX A;  3IU7 A;  2GG3 A;  1WLR A;  4R60 A;  5CNX A;  4RGZ 1;  1XGN A;  4FUK A;  3FMQ A;  4QR8 A;  1JAW A;  2BWW A;  5JI6 A;  3L7G A;  4U70 A;  3OVK A;  5E2C A;  3O5V A;  2V6C A;  4FO8 A;  4U75 A;  5CLS A;  3CB6 A;  3IU8 A;  4U73 A;  2EA4 A;  4U69 A;  4U6W A;  4IPA A;  2EVO A;  1WY2 A;  1YW7 A;  2EVM A;  3PEB A;  2MAT A;  2Q96 A;  4A6V A;  1W7V A;  5CIK A;  1MAT A;  2GG2 A;  3CB5 A;  3BIT A;  4FKC A;  4FLK A;  2Q95 A;  2BWS A;  1XGS A;  4ZWU A;  4IKS A;  4U76 A;  3IU9 A;  3PKD A;  1C21 A;  2BB7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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