3CB6A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form b)
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
441
structure length
441
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FACT complex subunit spt16
publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
total genus 159
structure length 441
sequence length 441
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb6A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb6A02
3IL0A 4FUKA 3PEBA 2BHCA 1BOAA 1XGMA 4Z7MA 5CNXA 2GU5A 3RORA 2Q95A 1N51A 2GU6A 2GG8A 4IF7A 4MATA 2Q92A 4U69A 2MATA 1YW8A 3QOCA 1YW7A 3PKEA 4ZWPA 1WKMA 1XGSA 2GG3A 2BWWA 4U1BA 2NQ7A 3PKCA 4U6EA 1YJ3A 2P98A 1YVMA 4PNCA 2P99A 5CIKA 1QXZA 3D27A 4RZYA 2B3KA 2EA2A 2Q96A 5D6FA 1B6AA 2GU4A 4IDYA 2B3HA 3Q6DA 1C22A 2B3LA 5CDVA 1KQ9A 3BIPA 2BHDA 1B59A 1WN1A 3CB5A 1BN5A 2BHAA 1C24A 4S2TP 1C23A 2BHBA 2Q94A 4IECA 2NQ6A 2EVMA 3PN9A 4RGZ1 5E2CA 1QXWA 4ZWUA 1M35A 2GG2A 3S6BA 1WY2A 3BITA 2GA2A 4U6ZA 2BWYA 4PV4A 2V3ZA 2BWXA 4FLJA 3PKAA 4A6VA 4S00A 1XGOA 4FLIA 1WL9A 2GG7A 4FO8A 1JAWA 2GGBA 1C21A 2EVOA 3L7GA 5FCHA 3CTZA 4U76A 1W7VA 3MR1A 3MATA 2P9AA 5CDEA 1R5GA 2OAZA 5JHUA 2GG0A 1WLRA 2EVCA 3FMRA 4JUQA 2V3YA 4U73A 5E5BA 2BWTA 2BN7A 2GU7A 3BIQA 1WBQA 3IU7A 4R60A 4IPAA 3TAVA 3FM3A 4IKRA 4U6CA 2HOWA 4A6WA 5CLSA 4IKUA 2GG9A 1KQ0A 1XGNA 4QR8A 4ZNGA 5CDLA 4OOKA 2EA4A 2BWVA 4S01A 2GTXA 2BB7A 4EGEA 1Y1NA 4FLKA 3PKBA 3OOOA 3MX6A 3L24A 2Q8KA 3RVAA 4U6WA 2BWSA 3I7MA 2BWUA 3OVKA 1C27A 2ZSGA 1KP0A 4RZZA 5D6EA 1MATA 1QXYA 2BH3A 4U6JA 2V6CA 1W2MA 4ZWOA 3IU8A 1QZYA 3FMQA 3IG4A 4FO7A 1A16A 5JFRA 4IU6A 5JI6A 2IW2A 1CHMA 2Q93A 3IU9A 4U71A 3TB5A 1WL6A 4B28A 2GZ5A 4HXXA 4FLLA 4U70A 4U75A 1PV9A 2DFIA 1O0XA 2G6PA 2V3XA 4IKTA 1R5HA 5CE6A 1XNZA 4IKSA 4FKCA 2ADUA 2GGCA 3PKDA 3CB6A 4S2RP 1YW9A 5FCFA 1R58A 4KM3A 2GG5A 3O5VA 2OKNA
chains in the Genus database with same CATH superfamily
3IL0A 4FUKA 3PEBA 2BHCA 1BOAA 1XGMA 4Z7MA 5CNXA 2GU5A 3RORA 2Q95A 1N51A 2GU6A 2GG8A 4IF7A 4MATA 2Q92A 4U69A 2MATA 1YW8A 3QOCA 1YW7A 3PKEA 4ZWPA 1WKMA 1XGSA 2GG3A 2BWWA 4U1BA 2NQ7A 3PKCA 4U6EA 1YJ3A 2P98A 1YVMA 4PNCA 2P99A 5CIKA 1QXZA 3D27A 4RZYA 2B3KA 2EA2A 2Q96A 5D6FA 1B6AA 2GU4A 4IDYA 2B3HA 3Q6DA 1C22A 2B3LA 5CDVA 1KQ9A 3BIPA 2BHDA 1B59A 1WN1A 3CB5A 1BN5A 2BHAA 1C24A 4S2TP 1C23A 2BHBA 2Q94A 4IECA 2NQ6A 2EVMA 3PN9A 4RGZ1 5E2CA 1QXWA 4ZWUA 1M35A 2GG2A 3S6BA 1WY2A 3BITA 2GA2A 4U6ZA 2BWYA 4PV4A 2V3ZA 2BWXA 4FLJA 3PKAA 4A6VA 4S00A 1XGOA 4FLIA 1WL9A 2GG7A 4FO8A 1JAWA 2GGBA 1C21A 2EVOA 3L7GA 5FCHA 3CTZA 4U76A 1W7VA 3MR1A 3MATA 2P9AA 5CDEA 1R5GA 2OAZA 5JHUA 2GG0A 1WLRA 2EVCA 3FMRA 4JUQA 2V3YA 4U73A 5E5BA 2BWTA 2BN7A 2GU7A 3BIQA 1WBQA 3IU7A 4R60A 4IPAA 3TAVA 3FM3A 4IKRA 4U6CA 2HOWA 4A6WA 5CLSA 4IKUA 2GG9A 1KQ0A 1XGNA 4QR8A 4ZNGA 5CDLA 4OOKA 2EA4A 2BWVA 4S01A 2GTXA 2BB7A 4EGEA 1Y1NA 4FLKA 3PKBA 3OOOA 3MX6A 3L24A 2Q8KA 3RVAA 4U6WA 2BWSA 3I7MA 2BWUA 3OVKA 1C27A 2ZSGA 1KP0A 4RZZA 5D6EA 1MATA 1QXYA 2BH3A 4U6JA 2V6CA 1W2MA 4ZWOA 3IU8A 1QZYA 3FMQA 3IG4A 4FO7A 1A16A 5JFRA 4IU6A 5JI6A 2IW2A 1CHMA 2Q93A 3IU9A 4U71A 3TB5A 1WL6A 4B28A 2GZ5A 4HXXA 4FLLA 4U70A 4U75A 1PV9A 2DFIA 1O0XA 2G6PA 2V3XA 4IKTA 1R5HA 5CE6A 1XNZA 4IKSA 4FKCA 2ADUA 2GGCA 3PKDA 3CB6A 4S2RP 1YW9A 5FCFA 1R58A 4KM3A 2GG5A 3O5VA 2OKNA
chains in the Genus database with same CATH topology
3IL0A 4FUKA 3PEBA 2BHCA 1BOAA 1XGMA 4Z7MA 5CNXA 2GU5A 3RORA 2Q95A 1N51A 2GU6A 2GG8A 4IF7A 4MATA 2Q92A 4U69A 2MATA 1YW8A 3QOCA 1YW7A 3PKEA 4ZWPA 1WKMA 1XGSA 2GG3A 2BWWA 4U1BA 2NQ7A 3PKCA 4U6EA 1YJ3A 2P98A 1YVMA 4PNCA 2P99A 5CIKA 1QXZA 3D27A 4RZYA 2B3KA 2EA2A 2Q96A 5D6FA 1B6AA 2GU4A 4IDYA 2B3HA 3Q6DA 1C22A 2B3LA 5CDVA 1KQ9A 3BIPA 2BHDA 1B59A 1WN1A 3CB5A 1BN5A 2BHAA 1C24A 4S2TP 1C23A 2BHBA 2Q94A 4IECA 2NQ6A 2EVMA 3PN9A 4RGZ1 5E2CA 1QXWA 4ZWUA 1M35A 2GG2A 3S6BA 1WY2A 3BITA 2GA2A 4U6ZA 2BWYA 4PV4A 2V3ZA 2BWXA 4FLJA 3PKAA 4A6VA 4S00A 1XGOA 4FLIA 1WL9A 2GG7A 4FO8A 1JAWA 2GGBA 1C21A 2EVOA 3L7GA 5FCHA 3CTZA 4U76A 1W7VA 3MR1A 3MATA 2P9AA 5CDEA 1R5GA 2OAZA 5JHUA 2GG0A 1WLRA 2EVCA 3FMRA 4JUQA 2V3YA 4U73A 5E5BA 2BWTA 2BN7A 2GU7A 3BIQA 1WBQA 3IU7A 4R60A 4IPAA 3TAVA 3FM3A 4IKRA 4U6CA 2HOWA 4A6WA 5CLSA 4IKUA 2GG9A 1KQ0A 1XGNA 4QR8A 4ZNGA 5CDLA 4OOKA 2EA4A 2BWVA 4S01A 2GTXA 2BB7A 4EGEA 1Y1NA 4FLKA 3PKBA 3OOOA 3MX6A 3L24A 2Q8KA 3RVAA 4U6WA 2BWSA 3I7MA 2BWUA 3OVKA 1C27A 2ZSGA 1KP0A 4RZZA 5D6EA 1MATA 1QXYA 2BH3A 4U6JA 2V6CA 1W2MA 4ZWOA 3IU8A 1QZYA 3FMQA 3IG4A 4FO7A 1A16A 5JFRA 4IU6A 5JI6A 2IW2A 1CHMA 2Q93A 3IU9A 4U71A 3TB5A 1WL6A 4B28A 2GZ5A 4HXXA 4FLLA 4U70A 4U75A 1PV9A 2DFIA 1O0XA 2G6PA 2V3XA 4IKTA 1R5HA 5CE6A 1XNZA 4IKSA 4FKCA 2ADUA 2GGCA 3PKDA 3CB6A 4S2RP 1YW9A 5FCFA 1R58A 4KM3A 2GG5A 3O5VA 2OKNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IL0 A;  4FUK A;  3PEB A;  2BHC A;  1BOA A;  1XGM A;  4Z7M A;  5CNX A;  2GU5 A;  3ROR A;  2Q95 A;  1N51 A;  2GU6 A;  2GG8 A;  4IF7 A;  4MAT A;  2Q92 A;  4U69 A;  2MAT A;  1YW8 A;  3QOC A;  1YW7 A;  3PKE A;  4ZWP A;  1WKM A;  1XGS A;  2GG3 A;  2BWW A;  4U1B A;  2NQ7 A;  3PKC A;  4U6E A;  1YJ3 A;  2P98 A;  1YVM A;  4PNC A;  2P99 A;  5CIK A;  1QXZ A;  3D27 A;  4RZY A;  2B3K A;  2EA2 A;  2Q96 A;  5D6F A;  1B6A A;  2GU4 A;  4IDY A;  2B3H A;  3Q6D A;  1C22 A;  2B3L A;  5CDV A;  1KQ9 A;  3BIP A;  2BHD A;  1B59 A;  1WN1 A;  3CB5 A;  1BN5 A;  2BHA A;  1C24 A;  4S2T P;  1C23 A;  2BHB A;  2Q94 A;  4IEC A;  2NQ6 A;  2EVM A;  3PN9 A;  4RGZ 1;  5E2C A;  1QXW A;  4ZWU A;  1M35 A;  2GG2 A;  3S6B A;  1WY2 A;  3BIT A;  2GA2 A;  4U6Z A;  2BWY A;  4PV4 A;  2V3Z A;  2BWX A;  4FLJ A;  3PKA A;  4A6V A;  4S00 A;  1XGO A;  4FLI A;  1WL9 A;  2GG7 A;  4FO8 A;  1JAW A;  2GGB A;  1C21 A;  2EVO A;  3L7G A;  5FCH A;  3CTZ A;  4U76 A;  1W7V A;  3MR1 A;  3MAT A;  2P9A A;  5CDE A;  1R5G A;  2OAZ A;  5JHU A;  2GG0 A;  1WLR A;  2EVC A;  3FMR A;  4JUQ A;  2V3Y A;  4U73 A;  5E5B A;  2BWT A;  2BN7 A;  2GU7 A;  3BIQ A;  1WBQ A;  3IU7 A;  4R60 A;  4IPA A;  3TAV A;  3FM3 A;  4IKR A;  4U6C A;  2HOW A;  4A6W A;  5CLS A;  4IKU A;  2GG9 A;  1KQ0 A;  1XGN A;  4QR8 A;  4ZNG A;  5CDL A;  4OOK A;  2EA4 A;  2BWV A;  4S01 A;  2GTX A;  2BB7 A;  4EGE A;  1Y1N A;  4FLK A;  3PKB A;  3OOO A;  3MX6 A;  3L24 A;  2Q8K A;  3RVA A;  4U6W A;  2BWS A;  3I7M A;  2BWU A;  3OVK A;  1C27 A;  2ZSG A;  1KP0 A;  4RZZ A;  5D6E A;  1MAT A;  1QXY A;  2BH3 A;  4U6J A;  2V6C A;  1W2M A;  4ZWO A;  3IU8 A;  1QZY A;  3FMQ A;  3IG4 A;  4FO7 A;  1A16 A;  5JFR A;  4IU6 A;  5JI6 A;  2IW2 A;  1CHM A;  2Q93 A;  3IU9 A;  4U71 A;  3TB5 A;  1WL6 A;  4B28 A;  2GZ5 A;  4HXX A;  4FLL A;  4U70 A;  4U75 A;  1PV9 A;  2DFI A;  1O0X A;  2G6P A;  2V3X A;  4IKT A;  1R5H A;  5CE6 A;  1XNZ A;  4IKS A;  4FKC A;  2ADU A;  2GGC A;  3PKD A;  3CB6 A;  4S2R P;  1YW9 A;  5FCF A;  1R58 A;  4KM3 A;  2GG5 A;  3O5V A;  2OKN A; 
#chains in the Genus database with same CATH topology
 3IL0 A;  4FUK A;  3PEB A;  2BHC A;  1BOA A;  1XGM A;  4Z7M A;  5CNX A;  2GU5 A;  3ROR A;  2Q95 A;  1N51 A;  2GU6 A;  2GG8 A;  4IF7 A;  4MAT A;  2Q92 A;  4U69 A;  2MAT A;  1YW8 A;  3QOC A;  1YW7 A;  3PKE A;  4ZWP A;  1WKM A;  1XGS A;  2GG3 A;  2BWW A;  4U1B A;  2NQ7 A;  3PKC A;  4U6E A;  1YJ3 A;  2P98 A;  1YVM A;  4PNC A;  2P99 A;  5CIK A;  1QXZ A;  3D27 A;  4RZY A;  2B3K A;  2EA2 A;  2Q96 A;  5D6F A;  1B6A A;  2GU4 A;  4IDY A;  2B3H A;  3Q6D A;  1C22 A;  2B3L A;  5CDV A;  1KQ9 A;  3BIP A;  2BHD A;  1B59 A;  1WN1 A;  3CB5 A;  1BN5 A;  2BHA A;  1C24 A;  4S2T P;  1C23 A;  2BHB A;  2Q94 A;  4IEC A;  2NQ6 A;  2EVM A;  3PN9 A;  4RGZ 1;  5E2C A;  1QXW A;  4ZWU A;  1M35 A;  2GG2 A;  3S6B A;  1WY2 A;  3BIT A;  2GA2 A;  4U6Z A;  2BWY A;  4PV4 A;  2V3Z A;  2BWX A;  4FLJ A;  3PKA A;  4A6V A;  4S00 A;  1XGO A;  4FLI A;  1WL9 A;  2GG7 A;  4FO8 A;  1JAW A;  2GGB A;  1C21 A;  2EVO A;  3L7G A;  5FCH A;  3CTZ A;  4U76 A;  1W7V A;  3MR1 A;  3MAT A;  2P9A A;  5CDE A;  1R5G A;  2OAZ A;  5JHU A;  2GG0 A;  1WLR A;  2EVC A;  3FMR A;  4JUQ A;  2V3Y A;  4U73 A;  5E5B A;  2BWT A;  2BN7 A;  2GU7 A;  3BIQ A;  1WBQ A;  3IU7 A;  4R60 A;  4IPA A;  3TAV A;  3FM3 A;  4IKR A;  4U6C A;  2HOW A;  4A6W A;  5CLS A;  4IKU A;  2GG9 A;  1KQ0 A;  1XGN A;  4QR8 A;  4ZNG A;  5CDL A;  4OOK A;  2EA4 A;  2BWV A;  4S01 A;  2GTX A;  2BB7 A;  4EGE A;  1Y1N A;  4FLK A;  3PKB A;  3OOO A;  3MX6 A;  3L24 A;  2Q8K A;  3RVA A;  4U6W A;  2BWS A;  3I7M A;  2BWU A;  3OVK A;  1C27 A;  2ZSG A;  1KP0 A;  4RZZ A;  5D6E A;  1MAT A;  1QXY A;  2BH3 A;  4U6J A;  2V6C A;  1W2M A;  4ZWO A;  3IU8 A;  1QZY A;  3FMQ A;  3IG4 A;  4FO7 A;  1A16 A;  5JFR A;  4IU6 A;  5JI6 A;  2IW2 A;  1CHM A;  2Q93 A;  3IU9 A;  4U71 A;  3TB5 A;  1WL6 A;  4B28 A;  2GZ5 A;  4HXX A;  4FLL A;  4U70 A;  4U75 A;  1PV9 A;  2DFI A;  1O0X A;  2G6P A;  2V3X A;  4IKT A;  1R5H A;  5CE6 A;  1XNZ A;  4IKS A;  4FKC A;  2ADU A;  2GGC A;  3PKD A;  3CB6 A;  4S2R P;  1YW9 A;  5FCF A;  1R58 A;  4KM3 A;  2GG5 A;  3O5V A;  2OKN A; 
#chains in the Genus database with same CATH homology
 3IL0 A;  4FUK A;  3PEB A;  2BHC A;  1BOA A;  1XGM A;  4Z7M A;  5CNX A;  2GU5 A;  3ROR A;  2Q95 A;  1N51 A;  2GU6 A;  2GG8 A;  4IF7 A;  4MAT A;  2Q92 A;  4U69 A;  2MAT A;  1YW8 A;  3QOC A;  1YW7 A;  3PKE A;  4ZWP A;  1WKM A;  1XGS A;  2GG3 A;  2BWW A;  4U1B A;  2NQ7 A;  3PKC A;  4U6E A;  1YJ3 A;  2P98 A;  1YVM A;  4PNC A;  2P99 A;  5CIK A;  1QXZ A;  3D27 A;  4RZY A;  2B3K A;  2EA2 A;  2Q96 A;  5D6F A;  1B6A A;  2GU4 A;  4IDY A;  2B3H A;  3Q6D A;  1C22 A;  2B3L A;  5CDV A;  1KQ9 A;  3BIP A;  2BHD A;  1B59 A;  1WN1 A;  3CB5 A;  1BN5 A;  2BHA A;  1C24 A;  4S2T P;  1C23 A;  2BHB A;  2Q94 A;  4IEC A;  2NQ6 A;  2EVM A;  3PN9 A;  4RGZ 1;  5E2C A;  1QXW A;  4ZWU A;  1M35 A;  2GG2 A;  3S6B A;  1WY2 A;  3BIT A;  2GA2 A;  4U6Z A;  2BWY A;  4PV4 A;  2V3Z A;  2BWX A;  4FLJ A;  3PKA A;  4A6V A;  4S00 A;  1XGO A;  4FLI A;  1WL9 A;  2GG7 A;  4FO8 A;  1JAW A;  2GGB A;  1C21 A;  2EVO A;  3L7G A;  5FCH A;  3CTZ A;  4U76 A;  1W7V A;  3MR1 A;  3MAT A;  2P9A A;  5CDE A;  1R5G A;  2OAZ A;  5JHU A;  2GG0 A;  1WLR A;  2EVC A;  3FMR A;  4JUQ A;  2V3Y A;  4U73 A;  5E5B A;  2BWT A;  2BN7 A;  2GU7 A;  3BIQ A;  1WBQ A;  3IU7 A;  4R60 A;  4IPA A;  3TAV A;  3FM3 A;  4IKR A;  4U6C A;  2HOW A;  4A6W A;  5CLS A;  4IKU A;  2GG9 A;  1KQ0 A;  1XGN A;  4QR8 A;  4ZNG A;  5CDL A;  4OOK A;  2EA4 A;  2BWV A;  4S01 A;  2GTX A;  2BB7 A;  4EGE A;  1Y1N A;  4FLK A;  3PKB A;  3OOO A;  3MX6 A;  3L24 A;  2Q8K A;  3RVA A;  4U6W A;  2BWS A;  3I7M A;  2BWU A;  3OVK A;  1C27 A;  2ZSG A;  1KP0 A;  4RZZ A;  5D6E A;  1MAT A;  1QXY A;  2BH3 A;  4U6J A;  2V6C A;  1W2M A;  4ZWO A;  3IU8 A;  1QZY A;  3FMQ A;  3IG4 A;  4FO7 A;  1A16 A;  5JFR A;  4IU6 A;  5JI6 A;  2IW2 A;  1CHM A;  2Q93 A;  3IU9 A;  4U71 A;  3TB5 A;  1WL6 A;  4B28 A;  2GZ5 A;  4HXX A;  4FLL A;  4U70 A;  4U75 A;  1PV9 A;  2DFI A;  1O0X A;  2G6P A;  2V3X A;  4IKT A;  1R5H A;  5CE6 A;  1XNZ A;  4IKS A;  4FKC A;  2ADU A;  2GGC A;  3PKD A;  3CB6 A;  4S2R P;  1YW9 A;  5FCF A;  1R58 A;  4KM3 A;  2GG5 A;  3O5V A;  2OKN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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