3CB6A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form b)
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
441
structure length
441
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FACT complex subunit spt16
publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
total genus 159
structure length 441
sequence length 441
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb6A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb6A02
4FKCA 1W2MA 3L24A 1C21A 1WBQA 3O5VA 4U73A 3CTZA 2GU5A 1W7VA 2B3KA 2OAZA 3BIPA 4B28A 4EGEA 1N51A 4PV4A 4IKUA 4U1BA 3IU7A 3Q6DA 3PKDA 1O0XA 3IG4A 3IU9A 4IPAA 2BWVA 4ZWPA 3BITA 5D6FA 2GG3A 4U76A 5FCFA 2MATA 4U71A 1C27A 2GG0A 3S6BA 5E5BA 2B3LA 2BWSA 4RZYA 4FLIA 1XGNA 1QXYA 3MX6A 2V3XA 2BWXA 4OOKA 3CB6A 2EVCA 4A6VA 4U70A 2BWWA 2EA2A 2Q93A 2V6CA 4JUQA 4FLLA 1YW7A 4U6ZA 2P98A 2IW2A 1WL9A 4IU6A 1KQ9A 1MATA 2GGBA 2GU7A 1Y1NA 2Q95A 3MATA 5D6EA 2BWTA 2BHAA 2EVMA 1PV9A 2ADUA 2GG5A 2NQ7A 5JI6A 4RGZ1 2GU6A 2ZSGA 3QOCA 1B6AA 4IDYA 1XGSA 4S01A 1C24A 3PEBA 1QZYA 1B59A 2GA2A 2GZ5A 3FM3A 4FO7A 4IECA 4FO8A 1YJ3A 4ZNGA 1YVMA 2GG9A 4U6CA 4S2TP 5FCHA 4U6JA 1QXZA 4FLKA 2GTXA 4U6WA 3BIQA 3TB5A 4RZZA 2BHBA 3PKBA 3IU8A 4IF7A 5CLSA 5JHUA 2BB7A 1YW8A 4PNCA 1R5GA 3MR1A 2BWUA 1M35A 1WL6A 1C23A 1WLRA 2GGCA 2V3ZA 5JFRA 2HOWA 3I7MA 2BWYA 3RORA 2P99A 2EVOA 3RVAA 4IKRA 2BHCA 5CNXA 3PKAA 2BN7A 3L7GA 5CDEA 3PKEA 2DFIA 4FUKA 4IKTA 1XGMA 4U6EA 4Z7MA 1XGOA 2B3HA 1KP0A 1R58A 2OKNA 3FMQA 2GG8A 1WN1A 3PN9A 4A6WA 3CB5A 2GG7A 2EA4A 1XNZA 1QXWA 1C22A 1R5HA 4S2RP 5CDLA 4KM3A 1BOAA 4R60A 4FLJA 1A16A 4U69A 1WY2A 2P9AA 5E2CA 2GG2A 3PKCA 2V3YA 2GU4A 4QR8A 2BHDA 4MATA 1BN5A 5CIKA 4HXXA 4ZWUA 2Q96A 3FMRA 1WKMA 3IL0A 2Q8KA 1KQ0A 5CDVA 2BH3A 3OVKA 3OOOA 2NQ6A 4U75A 1CHMA 4S00A 3D27A 3TAVA 2Q92A 4IKSA 2G6PA 1JAWA 5CE6A 4ZWOA 1YW9A 2Q94A
chains in the Genus database with same CATH superfamily
4FKCA 1W2MA 3L24A 1C21A 1WBQA 3O5VA 4U73A 3CTZA 2GU5A 1W7VA 2B3KA 2OAZA 3BIPA 4B28A 4EGEA 1N51A 4PV4A 4IKUA 4U1BA 3IU7A 3Q6DA 3PKDA 1O0XA 3IG4A 3IU9A 4IPAA 2BWVA 4ZWPA 3BITA 5D6FA 2GG3A 4U76A 5FCFA 2MATA 4U71A 1C27A 2GG0A 3S6BA 5E5BA 2B3LA 2BWSA 4RZYA 4FLIA 1XGNA 1QXYA 3MX6A 2V3XA 2BWXA 4OOKA 3CB6A 2EVCA 4A6VA 4U70A 2BWWA 2EA2A 2Q93A 2V6CA 4JUQA 4FLLA 1YW7A 4U6ZA 2P98A 2IW2A 1WL9A 4IU6A 1KQ9A 1MATA 2GGBA 2GU7A 1Y1NA 2Q95A 3MATA 5D6EA 2BWTA 2BHAA 2EVMA 1PV9A 2ADUA 2GG5A 2NQ7A 5JI6A 4RGZ1 2GU6A 2ZSGA 3QOCA 1B6AA 4IDYA 1XGSA 4S01A 1C24A 3PEBA 1QZYA 1B59A 2GA2A 2GZ5A 3FM3A 4FO7A 4IECA 4FO8A 1YJ3A 4ZNGA 1YVMA 2GG9A 4U6CA 4S2TP 5FCHA 4U6JA 1QXZA 4FLKA 2GTXA 4U6WA 3BIQA 3TB5A 4RZZA 2BHBA 3PKBA 3IU8A 4IF7A 5CLSA 5JHUA 2BB7A 1YW8A 4PNCA 1R5GA 3MR1A 2BWUA 1M35A 1WL6A 1C23A 1WLRA 2GGCA 2V3ZA 5JFRA 2HOWA 3I7MA 2BWYA 3RORA 2P99A 2EVOA 3RVAA 4IKRA 2BHCA 5CNXA 3PKAA 2BN7A 3L7GA 5CDEA 3PKEA 2DFIA 4FUKA 4IKTA 1XGMA 4U6EA 4Z7MA 1XGOA 2B3HA 1KP0A 1R58A 2OKNA 3FMQA 2GG8A 1WN1A 3PN9A 4A6WA 3CB5A 2GG7A 2EA4A 1XNZA 1QXWA 1C22A 1R5HA 4S2RP 5CDLA 4KM3A 1BOAA 4R60A 4FLJA 1A16A 4U69A 1WY2A 2P9AA 5E2CA 2GG2A 3PKCA 2V3YA 2GU4A 4QR8A 2BHDA 4MATA 1BN5A 5CIKA 4HXXA 4ZWUA 2Q96A 3FMRA 1WKMA 3IL0A 2Q8KA 1KQ0A 5CDVA 2BH3A 3OVKA 3OOOA 2NQ6A 4U75A 1CHMA 4S00A 3D27A 3TAVA 2Q92A 4IKSA 2G6PA 1JAWA 5CE6A 4ZWOA 1YW9A 2Q94A
chains in the Genus database with same CATH topology
4FKCA 1W2MA 3L24A 1C21A 1WBQA 3O5VA 4U73A 3CTZA 2GU5A 1W7VA 2B3KA 2OAZA 3BIPA 4B28A 4EGEA 1N51A 4PV4A 4IKUA 4U1BA 3IU7A 3Q6DA 3PKDA 1O0XA 3IG4A 3IU9A 4IPAA 2BWVA 4ZWPA 3BITA 5D6FA 2GG3A 4U76A 5FCFA 2MATA 4U71A 1C27A 2GG0A 3S6BA 5E5BA 2B3LA 2BWSA 4RZYA 4FLIA 1XGNA 1QXYA 3MX6A 2V3XA 2BWXA 4OOKA 3CB6A 2EVCA 4A6VA 4U70A 2BWWA 2EA2A 2Q93A 2V6CA 4JUQA 4FLLA 1YW7A 4U6ZA 2P98A 2IW2A 1WL9A 4IU6A 1KQ9A 1MATA 2GGBA 2GU7A 1Y1NA 2Q95A 3MATA 5D6EA 2BWTA 2BHAA 2EVMA 1PV9A 2ADUA 2GG5A 2NQ7A 5JI6A 4RGZ1 2GU6A 2ZSGA 3QOCA 1B6AA 4IDYA 1XGSA 4S01A 1C24A 3PEBA 1QZYA 1B59A 2GA2A 2GZ5A 3FM3A 4FO7A 4IECA 4FO8A 1YJ3A 4ZNGA 1YVMA 2GG9A 4U6CA 4S2TP 5FCHA 4U6JA 1QXZA 4FLKA 2GTXA 4U6WA 3BIQA 3TB5A 4RZZA 2BHBA 3PKBA 3IU8A 4IF7A 5CLSA 5JHUA 2BB7A 1YW8A 4PNCA 1R5GA 3MR1A 2BWUA 1M35A 1WL6A 1C23A 1WLRA 2GGCA 2V3ZA 5JFRA 2HOWA 3I7MA 2BWYA 3RORA 2P99A 2EVOA 3RVAA 4IKRA 2BHCA 5CNXA 3PKAA 2BN7A 3L7GA 5CDEA 3PKEA 2DFIA 4FUKA 4IKTA 1XGMA 4U6EA 4Z7MA 1XGOA 2B3HA 1KP0A 1R58A 2OKNA 3FMQA 2GG8A 1WN1A 3PN9A 4A6WA 3CB5A 2GG7A 2EA4A 1XNZA 1QXWA 1C22A 1R5HA 4S2RP 5CDLA 4KM3A 1BOAA 4R60A 4FLJA 1A16A 4U69A 1WY2A 2P9AA 5E2CA 2GG2A 3PKCA 2V3YA 2GU4A 4QR8A 2BHDA 4MATA 1BN5A 5CIKA 4HXXA 4ZWUA 2Q96A 3FMRA 1WKMA 3IL0A 2Q8KA 1KQ0A 5CDVA 2BH3A 3OVKA 3OOOA 2NQ6A 4U75A 1CHMA 4S00A 3D27A 3TAVA 2Q92A 4IKSA 2G6PA 1JAWA 5CE6A 4ZWOA 1YW9A 2Q94A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FKC A;  1W2M A;  3L24 A;  1C21 A;  1WBQ A;  3O5V A;  4U73 A;  3CTZ A;  2GU5 A;  1W7V A;  2B3K A;  2OAZ A;  3BIP A;  4B28 A;  4EGE A;  1N51 A;  4PV4 A;  4IKU A;  4U1B A;  3IU7 A;  3Q6D A;  3PKD A;  1O0X A;  3IG4 A;  3IU9 A;  4IPA A;  2BWV A;  4ZWP A;  3BIT A;  5D6F A;  2GG3 A;  4U76 A;  5FCF A;  2MAT A;  4U71 A;  1C27 A;  2GG0 A;  3S6B A;  5E5B A;  2B3L A;  2BWS A;  4RZY A;  4FLI A;  1XGN A;  1QXY A;  3MX6 A;  2V3X A;  2BWX A;  4OOK A;  3CB6 A;  2EVC A;  4A6V A;  4U70 A;  2BWW A;  2EA2 A;  2Q93 A;  2V6C A;  4JUQ A;  4FLL A;  1YW7 A;  4U6Z A;  2P98 A;  2IW2 A;  1WL9 A;  4IU6 A;  1KQ9 A;  1MAT A;  2GGB A;  2GU7 A;  1Y1N A;  2Q95 A;  3MAT A;  5D6E A;  2BWT A;  2BHA A;  2EVM A;  1PV9 A;  2ADU A;  2GG5 A;  2NQ7 A;  5JI6 A;  4RGZ 1;  2GU6 A;  2ZSG A;  3QOC A;  1B6A A;  4IDY A;  1XGS A;  4S01 A;  1C24 A;  3PEB A;  1QZY A;  1B59 A;  2GA2 A;  2GZ5 A;  3FM3 A;  4FO7 A;  4IEC A;  4FO8 A;  1YJ3 A;  4ZNG A;  1YVM A;  2GG9 A;  4U6C A;  4S2T P;  5FCH A;  4U6J A;  1QXZ A;  4FLK A;  2GTX A;  4U6W A;  3BIQ A;  3TB5 A;  4RZZ A;  2BHB A;  3PKB A;  3IU8 A;  4IF7 A;  5CLS A;  5JHU A;  2BB7 A;  1YW8 A;  4PNC A;  1R5G A;  3MR1 A;  2BWU A;  1M35 A;  1WL6 A;  1C23 A;  1WLR A;  2GGC A;  2V3Z A;  5JFR A;  2HOW A;  3I7M A;  2BWY A;  3ROR A;  2P99 A;  2EVO A;  3RVA A;  4IKR A;  2BHC A;  5CNX A;  3PKA A;  2BN7 A;  3L7G A;  5CDE A;  3PKE A;  2DFI A;  4FUK A;  4IKT A;  1XGM A;  4U6E A;  4Z7M A;  1XGO A;  2B3H A;  1KP0 A;  1R58 A;  2OKN A;  3FMQ A;  2GG8 A;  1WN1 A;  3PN9 A;  4A6W A;  3CB5 A;  2GG7 A;  2EA4 A;  1XNZ A;  1QXW A;  1C22 A;  1R5H A;  4S2R P;  5CDL A;  4KM3 A;  1BOA A;  4R60 A;  4FLJ A;  1A16 A;  4U69 A;  1WY2 A;  2P9A A;  5E2C A;  2GG2 A;  3PKC A;  2V3Y A;  2GU4 A;  4QR8 A;  2BHD A;  4MAT A;  1BN5 A;  5CIK A;  4HXX A;  4ZWU A;  2Q96 A;  3FMR A;  1WKM A;  3IL0 A;  2Q8K A;  1KQ0 A;  5CDV A;  2BH3 A;  3OVK A;  3OOO A;  2NQ6 A;  4U75 A;  1CHM A;  4S00 A;  3D27 A;  3TAV A;  2Q92 A;  4IKS A;  2G6P A;  1JAW A;  5CE6 A;  4ZWO A;  1YW9 A;  2Q94 A; 
#chains in the Genus database with same CATH topology
 4FKC A;  1W2M A;  3L24 A;  1C21 A;  1WBQ A;  3O5V A;  4U73 A;  3CTZ A;  2GU5 A;  1W7V A;  2B3K A;  2OAZ A;  3BIP A;  4B28 A;  4EGE A;  1N51 A;  4PV4 A;  4IKU A;  4U1B A;  3IU7 A;  3Q6D A;  3PKD A;  1O0X A;  3IG4 A;  3IU9 A;  4IPA A;  2BWV A;  4ZWP A;  3BIT A;  5D6F A;  2GG3 A;  4U76 A;  5FCF A;  2MAT A;  4U71 A;  1C27 A;  2GG0 A;  3S6B A;  5E5B A;  2B3L A;  2BWS A;  4RZY A;  4FLI A;  1XGN A;  1QXY A;  3MX6 A;  2V3X A;  2BWX A;  4OOK A;  3CB6 A;  2EVC A;  4A6V A;  4U70 A;  2BWW A;  2EA2 A;  2Q93 A;  2V6C A;  4JUQ A;  4FLL A;  1YW7 A;  4U6Z A;  2P98 A;  2IW2 A;  1WL9 A;  4IU6 A;  1KQ9 A;  1MAT A;  2GGB A;  2GU7 A;  1Y1N A;  2Q95 A;  3MAT A;  5D6E A;  2BWT A;  2BHA A;  2EVM A;  1PV9 A;  2ADU A;  2GG5 A;  2NQ7 A;  5JI6 A;  4RGZ 1;  2GU6 A;  2ZSG A;  3QOC A;  1B6A A;  4IDY A;  1XGS A;  4S01 A;  1C24 A;  3PEB A;  1QZY A;  1B59 A;  2GA2 A;  2GZ5 A;  3FM3 A;  4FO7 A;  4IEC A;  4FO8 A;  1YJ3 A;  4ZNG A;  1YVM A;  2GG9 A;  4U6C A;  4S2T P;  5FCH A;  4U6J A;  1QXZ A;  4FLK A;  2GTX A;  4U6W A;  3BIQ A;  3TB5 A;  4RZZ A;  2BHB A;  3PKB A;  3IU8 A;  4IF7 A;  5CLS A;  5JHU A;  2BB7 A;  1YW8 A;  4PNC A;  1R5G A;  3MR1 A;  2BWU A;  1M35 A;  1WL6 A;  1C23 A;  1WLR A;  2GGC A;  2V3Z A;  5JFR A;  2HOW A;  3I7M A;  2BWY A;  3ROR A;  2P99 A;  2EVO A;  3RVA A;  4IKR A;  2BHC A;  5CNX A;  3PKA A;  2BN7 A;  3L7G A;  5CDE A;  3PKE A;  2DFI A;  4FUK A;  4IKT A;  1XGM A;  4U6E A;  4Z7M A;  1XGO A;  2B3H A;  1KP0 A;  1R58 A;  2OKN A;  3FMQ A;  2GG8 A;  1WN1 A;  3PN9 A;  4A6W A;  3CB5 A;  2GG7 A;  2EA4 A;  1XNZ A;  1QXW A;  1C22 A;  1R5H A;  4S2R P;  5CDL A;  4KM3 A;  1BOA A;  4R60 A;  4FLJ A;  1A16 A;  4U69 A;  1WY2 A;  2P9A A;  5E2C A;  2GG2 A;  3PKC A;  2V3Y A;  2GU4 A;  4QR8 A;  2BHD A;  4MAT A;  1BN5 A;  5CIK A;  4HXX A;  4ZWU A;  2Q96 A;  3FMR A;  1WKM A;  3IL0 A;  2Q8K A;  1KQ0 A;  5CDV A;  2BH3 A;  3OVK A;  3OOO A;  2NQ6 A;  4U75 A;  1CHM A;  4S00 A;  3D27 A;  3TAV A;  2Q92 A;  4IKS A;  2G6P A;  1JAW A;  5CE6 A;  4ZWO A;  1YW9 A;  2Q94 A; 
#chains in the Genus database with same CATH homology
 4FKC A;  1W2M A;  3L24 A;  1C21 A;  1WBQ A;  3O5V A;  4U73 A;  3CTZ A;  2GU5 A;  1W7V A;  2B3K A;  2OAZ A;  3BIP A;  4B28 A;  4EGE A;  1N51 A;  4PV4 A;  4IKU A;  4U1B A;  3IU7 A;  3Q6D A;  3PKD A;  1O0X A;  3IG4 A;  3IU9 A;  4IPA A;  2BWV A;  4ZWP A;  3BIT A;  5D6F A;  2GG3 A;  4U76 A;  5FCF A;  2MAT A;  4U71 A;  1C27 A;  2GG0 A;  3S6B A;  5E5B A;  2B3L A;  2BWS A;  4RZY A;  4FLI A;  1XGN A;  1QXY A;  3MX6 A;  2V3X A;  2BWX A;  4OOK A;  3CB6 A;  2EVC A;  4A6V A;  4U70 A;  2BWW A;  2EA2 A;  2Q93 A;  2V6C A;  4JUQ A;  4FLL A;  1YW7 A;  4U6Z A;  2P98 A;  2IW2 A;  1WL9 A;  4IU6 A;  1KQ9 A;  1MAT A;  2GGB A;  2GU7 A;  1Y1N A;  2Q95 A;  3MAT A;  5D6E A;  2BWT A;  2BHA A;  2EVM A;  1PV9 A;  2ADU A;  2GG5 A;  2NQ7 A;  5JI6 A;  4RGZ 1;  2GU6 A;  2ZSG A;  3QOC A;  1B6A A;  4IDY A;  1XGS A;  4S01 A;  1C24 A;  3PEB A;  1QZY A;  1B59 A;  2GA2 A;  2GZ5 A;  3FM3 A;  4FO7 A;  4IEC A;  4FO8 A;  1YJ3 A;  4ZNG A;  1YVM A;  2GG9 A;  4U6C A;  4S2T P;  5FCH A;  4U6J A;  1QXZ A;  4FLK A;  2GTX A;  4U6W A;  3BIQ A;  3TB5 A;  4RZZ A;  2BHB A;  3PKB A;  3IU8 A;  4IF7 A;  5CLS A;  5JHU A;  2BB7 A;  1YW8 A;  4PNC A;  1R5G A;  3MR1 A;  2BWU A;  1M35 A;  1WL6 A;  1C23 A;  1WLR A;  2GGC A;  2V3Z A;  5JFR A;  2HOW A;  3I7M A;  2BWY A;  3ROR A;  2P99 A;  2EVO A;  3RVA A;  4IKR A;  2BHC A;  5CNX A;  3PKA A;  2BN7 A;  3L7G A;  5CDE A;  3PKE A;  2DFI A;  4FUK A;  4IKT A;  1XGM A;  4U6E A;  4Z7M A;  1XGO A;  2B3H A;  1KP0 A;  1R58 A;  2OKN A;  3FMQ A;  2GG8 A;  1WN1 A;  3PN9 A;  4A6W A;  3CB5 A;  2GG7 A;  2EA4 A;  1XNZ A;  1QXW A;  1C22 A;  1R5H A;  4S2R P;  5CDL A;  4KM3 A;  1BOA A;  4R60 A;  4FLJ A;  1A16 A;  4U69 A;  1WY2 A;  2P9A A;  5E2C A;  2GG2 A;  3PKC A;  2V3Y A;  2GU4 A;  4QR8 A;  2BHD A;  4MAT A;  1BN5 A;  5CIK A;  4HXX A;  4ZWU A;  2Q96 A;  3FMR A;  1WKM A;  3IL0 A;  2Q8K A;  1KQ0 A;  5CDV A;  2BH3 A;  3OVK A;  3OOO A;  2NQ6 A;  4U75 A;  1CHM A;  4S00 A;  3D27 A;  3TAV A;  2Q92 A;  4IKS A;  2G6P A;  1JAW A;  5CE6 A;  4ZWO A;  1YW9 A;  2Q94 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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