3CB6A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form b)
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
441
structure length
441
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords FACT complex subunit spt16
publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 159
structure length 441
sequence length 441
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb6A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb6A02
4U70A 1XNZA 4B28A 2BN7A 3TAVA 3CTZA 1C24A 2OAZA 5FCHA 5CDVA 1CHMA 3MR1A 2DFIA 4IKTA 3TB5A 3RVAA 4IKUA 3O5VA 2GG9A 3QOCA 5FCFA 2MATA 5JFRA 4U6JA 1JAWA 1B6AA 4IU6A 1MATA 1R58A 4U6CA 1WN1A 5CE6A 5CDLA 1XGNA 5CNXA 2EA4A 1YVMA 2BB7A 3BIQA 4PV4A 2Q95A 4U71A 3IU9A 2BHCA 2BWXA 2GG0A 2Q96A 4ZWUA 2EVMA 3OOOA 3IU8A 2OKNA 2ZSGA 1C21A 3CB6A 2BWYA 3I7MA 1YW9A 4U73A 4U76A 2V3YA 4A6WA 2BHBA 4U6WA 4IKRA 3PEBA 2GA2A 1YW7A 2GG8A 2BWVA 3MX6A 2V3ZA 3BITA 4HXXA 2NQ6A 1BN5A 3Q6DA 2B3KA 4U6EA 4KM3A 5D6FA 2GZ5A 3D27A 2ADUA 2GU7A 2BWTA 4RGZ1 2EVCA 1KQ0A 4FLIA 4OOKA 1C23A 3OVKA 1WL6A 2V6CA 1C22A 2Q92A 4FO8A 4S2RP 4IPAA 4FKCA 4IF7A 1O0XA 4PNCA 2EVOA 1R5HA 1WKMA 2EA2A 3PKAA 5E5BA 2GG2A 3PKBA 4U75A 2BWWA 4FLLA 4R60A 1KP0A 3L7GA 3L24A 2GG5A 1YJ3A 1XGOA 4S2TP 1WY2A 1BOAA 3MATA 2P9AA 1XGSA 1WL9A 2B3LA 3PN9A 1KQ9A 3IU7A 1QZYA 2GGBA 4Z7MA 4FO7A 1WLRA 3FM3A 3S6BA 5CLSA 3RORA 5JI6A 5E2CA 2G6PA 2BWSA 2Q93A 1M35A 2BWUA 2NQ7A 4ZNGA 2GG7A 3FMRA 2P99A 2BH3A 4ZWPA 3IL0A 4QR8A 3PKCA 4FLJA 3PKDA 2BHAA 5CDEA 2GG3A 1PV9A 5JHUA 1XGMA 3CB5A 2P98A 1W2MA 2GU6A 3FMQA 4JUQA 3PKEA 1A16A 1QXWA 1WBQA 4FLKA 4ZWOA 2GTXA 4FUKA 2Q94A 2IW2A 2B3HA 2GU4A 4EGEA 3BIPA 1Y1NA 4S00A 4IDYA 4RZZA 2BHDA 2GU5A 2HOWA 3IG4A 4S01A 4A6VA 1W7VA 2GGCA 1C27A 4U1BA 5CIKA 4U6ZA 4RZYA 4IECA 2Q8KA 1R5GA 4MATA 1QXYA 1YW8A 1N51A 4IKSA 1QXZA 5D6EA 4U69A 1B59A 2V3XA
chains in the Genus database with same CATH superfamily
4U70A 1XNZA 4B28A 2BN7A 3TAVA 3CTZA 1C24A 2OAZA 5FCHA 5CDVA 1CHMA 3MR1A 2DFIA 4IKTA 3TB5A 3RVAA 4IKUA 3O5VA 2GG9A 3QOCA 5FCFA 2MATA 5JFRA 4U6JA 1JAWA 1B6AA 4IU6A 1MATA 1R58A 4U6CA 1WN1A 5CE6A 5CDLA 1XGNA 5CNXA 2EA4A 1YVMA 2BB7A 3BIQA 4PV4A 2Q95A 4U71A 3IU9A 2BHCA 2BWXA 2GG0A 2Q96A 4ZWUA 2EVMA 3OOOA 3IU8A 2OKNA 2ZSGA 1C21A 3CB6A 2BWYA 3I7MA 1YW9A 4U73A 4U76A 2V3YA 4A6WA 2BHBA 4U6WA 4IKRA 3PEBA 2GA2A 1YW7A 2GG8A 2BWVA 3MX6A 2V3ZA 3BITA 4HXXA 2NQ6A 1BN5A 3Q6DA 2B3KA 4U6EA 4KM3A 5D6FA 2GZ5A 3D27A 2ADUA 2GU7A 2BWTA 4RGZ1 2EVCA 1KQ0A 4FLIA 4OOKA 1C23A 3OVKA 1WL6A 2V6CA 1C22A 2Q92A 4FO8A 4S2RP 4IPAA 4FKCA 4IF7A 1O0XA 4PNCA 2EVOA 1R5HA 1WKMA 2EA2A 3PKAA 5E5BA 2GG2A 3PKBA 4U75A 2BWWA 4FLLA 4R60A 1KP0A 3L7GA 3L24A 2GG5A 1YJ3A 1XGOA 4S2TP 1WY2A 1BOAA 3MATA 2P9AA 1XGSA 1WL9A 2B3LA 3PN9A 1KQ9A 3IU7A 1QZYA 2GGBA 4Z7MA 4FO7A 1WLRA 3FM3A 3S6BA 5CLSA 3RORA 5JI6A 5E2CA 2G6PA 2BWSA 2Q93A 1M35A 2BWUA 2NQ7A 4ZNGA 2GG7A 3FMRA 2P99A 2BH3A 4ZWPA 3IL0A 4QR8A 3PKCA 4FLJA 3PKDA 2BHAA 5CDEA 2GG3A 1PV9A 5JHUA 1XGMA 3CB5A 2P98A 1W2MA 2GU6A 3FMQA 4JUQA 3PKEA 1A16A 1QXWA 1WBQA 4FLKA 4ZWOA 2GTXA 4FUKA 2Q94A 2IW2A 2B3HA 2GU4A 4EGEA 3BIPA 1Y1NA 4S00A 4IDYA 4RZZA 2BHDA 2GU5A 2HOWA 3IG4A 4S01A 4A6VA 1W7VA 2GGCA 1C27A 4U1BA 5CIKA 4U6ZA 4RZYA 4IECA 2Q8KA 1R5GA 4MATA 1QXYA 1YW8A 1N51A 4IKSA 1QXZA 5D6EA 4U69A 1B59A 2V3XA
chains in the Genus database with same CATH topology
4U70A 1XNZA 4B28A 2BN7A 3TAVA 3CTZA 1C24A 2OAZA 5FCHA 5CDVA 1CHMA 3MR1A 2DFIA 4IKTA 3TB5A 3RVAA 4IKUA 3O5VA 2GG9A 3QOCA 5FCFA 2MATA 5JFRA 4U6JA 1JAWA 1B6AA 4IU6A 1MATA 1R58A 4U6CA 1WN1A 5CE6A 5CDLA 1XGNA 5CNXA 2EA4A 1YVMA 2BB7A 3BIQA 4PV4A 2Q95A 4U71A 3IU9A 2BHCA 2BWXA 2GG0A 2Q96A 4ZWUA 2EVMA 3OOOA 3IU8A 2OKNA 2ZSGA 1C21A 3CB6A 2BWYA 3I7MA 1YW9A 4U73A 4U76A 2V3YA 4A6WA 2BHBA 4U6WA 4IKRA 3PEBA 2GA2A 1YW7A 2GG8A 2BWVA 3MX6A 2V3ZA 3BITA 4HXXA 2NQ6A 1BN5A 3Q6DA 2B3KA 4U6EA 4KM3A 5D6FA 2GZ5A 3D27A 2ADUA 2GU7A 2BWTA 4RGZ1 2EVCA 1KQ0A 4FLIA 4OOKA 1C23A 3OVKA 1WL6A 2V6CA 1C22A 2Q92A 4FO8A 4S2RP 4IPAA 4FKCA 4IF7A 1O0XA 4PNCA 2EVOA 1R5HA 1WKMA 2EA2A 3PKAA 5E5BA 2GG2A 3PKBA 4U75A 2BWWA 4FLLA 4R60A 1KP0A 3L7GA 3L24A 2GG5A 1YJ3A 1XGOA 4S2TP 1WY2A 1BOAA 3MATA 2P9AA 1XGSA 1WL9A 2B3LA 3PN9A 1KQ9A 3IU7A 1QZYA 2GGBA 4Z7MA 4FO7A 1WLRA 3FM3A 3S6BA 5CLSA 3RORA 5JI6A 5E2CA 2G6PA 2BWSA 2Q93A 1M35A 2BWUA 2NQ7A 4ZNGA 2GG7A 3FMRA 2P99A 2BH3A 4ZWPA 3IL0A 4QR8A 3PKCA 4FLJA 3PKDA 2BHAA 5CDEA 2GG3A 1PV9A 5JHUA 1XGMA 3CB5A 2P98A 1W2MA 2GU6A 3FMQA 4JUQA 3PKEA 1A16A 1QXWA 1WBQA 4FLKA 4ZWOA 2GTXA 4FUKA 2Q94A 2IW2A 2B3HA 2GU4A 4EGEA 3BIPA 1Y1NA 4S00A 4IDYA 4RZZA 2BHDA 2GU5A 2HOWA 3IG4A 4S01A 4A6VA 1W7VA 2GGCA 1C27A 4U1BA 5CIKA 4U6ZA 4RZYA 4IECA 2Q8KA 1R5GA 4MATA 1QXYA 1YW8A 1N51A 4IKSA 1QXZA 5D6EA 4U69A 1B59A 2V3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U70 A;  1XNZ A;  4B28 A;  2BN7 A;  3TAV A;  3CTZ A;  1C24 A;  2OAZ A;  5FCH A;  5CDV A;  1CHM A;  3MR1 A;  2DFI A;  4IKT A;  3TB5 A;  3RVA A;  4IKU A;  3O5V A;  2GG9 A;  3QOC A;  5FCF A;  2MAT A;  5JFR A;  4U6J A;  1JAW A;  1B6A A;  4IU6 A;  1MAT A;  1R58 A;  4U6C A;  1WN1 A;  5CE6 A;  5CDL A;  1XGN A;  5CNX A;  2EA4 A;  1YVM A;  2BB7 A;  3BIQ A;  4PV4 A;  2Q95 A;  4U71 A;  3IU9 A;  2BHC A;  2BWX A;  2GG0 A;  2Q96 A;  4ZWU A;  2EVM A;  3OOO A;  3IU8 A;  2OKN A;  2ZSG A;  1C21 A;  3CB6 A;  2BWY A;  3I7M A;  1YW9 A;  4U73 A;  4U76 A;  2V3Y A;  4A6W A;  2BHB A;  4U6W A;  4IKR A;  3PEB A;  2GA2 A;  1YW7 A;  2GG8 A;  2BWV A;  3MX6 A;  2V3Z A;  3BIT A;  4HXX A;  2NQ6 A;  1BN5 A;  3Q6D A;  2B3K A;  4U6E A;  4KM3 A;  5D6F A;  2GZ5 A;  3D27 A;  2ADU A;  2GU7 A;  2BWT A;  4RGZ 1;  2EVC A;  1KQ0 A;  4FLI A;  4OOK A;  1C23 A;  3OVK A;  1WL6 A;  2V6C A;  1C22 A;  2Q92 A;  4FO8 A;  4S2R P;  4IPA A;  4FKC A;  4IF7 A;  1O0X A;  4PNC A;  2EVO A;  1R5H A;  1WKM A;  2EA2 A;  3PKA A;  5E5B A;  2GG2 A;  3PKB A;  4U75 A;  2BWW A;  4FLL A;  4R60 A;  1KP0 A;  3L7G A;  3L24 A;  2GG5 A;  1YJ3 A;  1XGO A;  4S2T P;  1WY2 A;  1BOA A;  3MAT A;  2P9A A;  1XGS A;  1WL9 A;  2B3L A;  3PN9 A;  1KQ9 A;  3IU7 A;  1QZY A;  2GGB A;  4Z7M A;  4FO7 A;  1WLR A;  3FM3 A;  3S6B A;  5CLS A;  3ROR A;  5JI6 A;  5E2C A;  2G6P A;  2BWS A;  2Q93 A;  1M35 A;  2BWU A;  2NQ7 A;  4ZNG A;  2GG7 A;  3FMR A;  2P99 A;  2BH3 A;  4ZWP A;  3IL0 A;  4QR8 A;  3PKC A;  4FLJ A;  3PKD A;  2BHA A;  5CDE A;  2GG3 A;  1PV9 A;  5JHU A;  1XGM A;  3CB5 A;  2P98 A;  1W2M A;  2GU6 A;  3FMQ A;  4JUQ A;  3PKE A;  1A16 A;  1QXW A;  1WBQ A;  4FLK A;  4ZWO A;  2GTX A;  4FUK A;  2Q94 A;  2IW2 A;  2B3H A;  2GU4 A;  4EGE A;  3BIP A;  1Y1N A;  4S00 A;  4IDY A;  4RZZ A;  2BHD A;  2GU5 A;  2HOW A;  3IG4 A;  4S01 A;  4A6V A;  1W7V A;  2GGC A;  1C27 A;  4U1B A;  5CIK A;  4U6Z A;  4RZY A;  4IEC A;  2Q8K A;  1R5G A;  4MAT A;  1QXY A;  1YW8 A;  1N51 A;  4IKS A;  1QXZ A;  5D6E A;  4U69 A;  1B59 A;  2V3X A; 
#chains in the Genus database with same CATH topology
 4U70 A;  1XNZ A;  4B28 A;  2BN7 A;  3TAV A;  3CTZ A;  1C24 A;  2OAZ A;  5FCH A;  5CDV A;  1CHM A;  3MR1 A;  2DFI A;  4IKT A;  3TB5 A;  3RVA A;  4IKU A;  3O5V A;  2GG9 A;  3QOC A;  5FCF A;  2MAT A;  5JFR A;  4U6J A;  1JAW A;  1B6A A;  4IU6 A;  1MAT A;  1R58 A;  4U6C A;  1WN1 A;  5CE6 A;  5CDL A;  1XGN A;  5CNX A;  2EA4 A;  1YVM A;  2BB7 A;  3BIQ A;  4PV4 A;  2Q95 A;  4U71 A;  3IU9 A;  2BHC A;  2BWX A;  2GG0 A;  2Q96 A;  4ZWU A;  2EVM A;  3OOO A;  3IU8 A;  2OKN A;  2ZSG A;  1C21 A;  3CB6 A;  2BWY A;  3I7M A;  1YW9 A;  4U73 A;  4U76 A;  2V3Y A;  4A6W A;  2BHB A;  4U6W A;  4IKR A;  3PEB A;  2GA2 A;  1YW7 A;  2GG8 A;  2BWV A;  3MX6 A;  2V3Z A;  3BIT A;  4HXX A;  2NQ6 A;  1BN5 A;  3Q6D A;  2B3K A;  4U6E A;  4KM3 A;  5D6F A;  2GZ5 A;  3D27 A;  2ADU A;  2GU7 A;  2BWT A;  4RGZ 1;  2EVC A;  1KQ0 A;  4FLI A;  4OOK A;  1C23 A;  3OVK A;  1WL6 A;  2V6C A;  1C22 A;  2Q92 A;  4FO8 A;  4S2R P;  4IPA A;  4FKC A;  4IF7 A;  1O0X A;  4PNC A;  2EVO A;  1R5H A;  1WKM A;  2EA2 A;  3PKA A;  5E5B A;  2GG2 A;  3PKB A;  4U75 A;  2BWW A;  4FLL A;  4R60 A;  1KP0 A;  3L7G A;  3L24 A;  2GG5 A;  1YJ3 A;  1XGO A;  4S2T P;  1WY2 A;  1BOA A;  3MAT A;  2P9A A;  1XGS A;  1WL9 A;  2B3L A;  3PN9 A;  1KQ9 A;  3IU7 A;  1QZY A;  2GGB A;  4Z7M A;  4FO7 A;  1WLR A;  3FM3 A;  3S6B A;  5CLS A;  3ROR A;  5JI6 A;  5E2C A;  2G6P A;  2BWS A;  2Q93 A;  1M35 A;  2BWU A;  2NQ7 A;  4ZNG A;  2GG7 A;  3FMR A;  2P99 A;  2BH3 A;  4ZWP A;  3IL0 A;  4QR8 A;  3PKC A;  4FLJ A;  3PKD A;  2BHA A;  5CDE A;  2GG3 A;  1PV9 A;  5JHU A;  1XGM A;  3CB5 A;  2P98 A;  1W2M A;  2GU6 A;  3FMQ A;  4JUQ A;  3PKE A;  1A16 A;  1QXW A;  1WBQ A;  4FLK A;  4ZWO A;  2GTX A;  4FUK A;  2Q94 A;  2IW2 A;  2B3H A;  2GU4 A;  4EGE A;  3BIP A;  1Y1N A;  4S00 A;  4IDY A;  4RZZ A;  2BHD A;  2GU5 A;  2HOW A;  3IG4 A;  4S01 A;  4A6V A;  1W7V A;  2GGC A;  1C27 A;  4U1B A;  5CIK A;  4U6Z A;  4RZY A;  4IEC A;  2Q8K A;  1R5G A;  4MAT A;  1QXY A;  1YW8 A;  1N51 A;  4IKS A;  1QXZ A;  5D6E A;  4U69 A;  1B59 A;  2V3X A; 
#chains in the Genus database with same CATH homology
 4U70 A;  1XNZ A;  4B28 A;  2BN7 A;  3TAV A;  3CTZ A;  1C24 A;  2OAZ A;  5FCH A;  5CDV A;  1CHM A;  3MR1 A;  2DFI A;  4IKT A;  3TB5 A;  3RVA A;  4IKU A;  3O5V A;  2GG9 A;  3QOC A;  5FCF A;  2MAT A;  5JFR A;  4U6J A;  1JAW A;  1B6A A;  4IU6 A;  1MAT A;  1R58 A;  4U6C A;  1WN1 A;  5CE6 A;  5CDL A;  1XGN A;  5CNX A;  2EA4 A;  1YVM A;  2BB7 A;  3BIQ A;  4PV4 A;  2Q95 A;  4U71 A;  3IU9 A;  2BHC A;  2BWX A;  2GG0 A;  2Q96 A;  4ZWU A;  2EVM A;  3OOO A;  3IU8 A;  2OKN A;  2ZSG A;  1C21 A;  3CB6 A;  2BWY A;  3I7M A;  1YW9 A;  4U73 A;  4U76 A;  2V3Y A;  4A6W A;  2BHB A;  4U6W A;  4IKR A;  3PEB A;  2GA2 A;  1YW7 A;  2GG8 A;  2BWV A;  3MX6 A;  2V3Z A;  3BIT A;  4HXX A;  2NQ6 A;  1BN5 A;  3Q6D A;  2B3K A;  4U6E A;  4KM3 A;  5D6F A;  2GZ5 A;  3D27 A;  2ADU A;  2GU7 A;  2BWT A;  4RGZ 1;  2EVC A;  1KQ0 A;  4FLI A;  4OOK A;  1C23 A;  3OVK A;  1WL6 A;  2V6C A;  1C22 A;  2Q92 A;  4FO8 A;  4S2R P;  4IPA A;  4FKC A;  4IF7 A;  1O0X A;  4PNC A;  2EVO A;  1R5H A;  1WKM A;  2EA2 A;  3PKA A;  5E5B A;  2GG2 A;  3PKB A;  4U75 A;  2BWW A;  4FLL A;  4R60 A;  1KP0 A;  3L7G A;  3L24 A;  2GG5 A;  1YJ3 A;  1XGO A;  4S2T P;  1WY2 A;  1BOA A;  3MAT A;  2P9A A;  1XGS A;  1WL9 A;  2B3L A;  3PN9 A;  1KQ9 A;  3IU7 A;  1QZY A;  2GGB A;  4Z7M A;  4FO7 A;  1WLR A;  3FM3 A;  3S6B A;  5CLS A;  3ROR A;  5JI6 A;  5E2C A;  2G6P A;  2BWS A;  2Q93 A;  1M35 A;  2BWU A;  2NQ7 A;  4ZNG A;  2GG7 A;  3FMR A;  2P99 A;  2BH3 A;  4ZWP A;  3IL0 A;  4QR8 A;  3PKC A;  4FLJ A;  3PKD A;  2BHA A;  5CDE A;  2GG3 A;  1PV9 A;  5JHU A;  1XGM A;  3CB5 A;  2P98 A;  1W2M A;  2GU6 A;  3FMQ A;  4JUQ A;  3PKE A;  1A16 A;  1QXW A;  1WBQ A;  4FLK A;  4ZWO A;  2GTX A;  4FUK A;  2Q94 A;  2IW2 A;  2B3H A;  2GU4 A;  4EGE A;  3BIP A;  1Y1N A;  4S00 A;  4IDY A;  4RZZ A;  2BHD A;  2GU5 A;  2HOW A;  3IG4 A;  4S01 A;  4A6V A;  1W7V A;  2GGC A;  1C27 A;  4U1B A;  5CIK A;  4U6Z A;  4RZY A;  4IEC A;  2Q8K A;  1R5G A;  4MAT A;  1QXY A;  1YW8 A;  1N51 A;  4IKS A;  1QXZ A;  5D6E A;  4U69 A;  1B59 A;  2V3X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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