3OOOA

The structure of a proline dipeptidase from streptococcus agalactiae 2603v
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
132
structure length
132
Chain Sequence
AMSKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title The structure of a proline dipeptidase from Streptococcus agalactiae 2603V
rcsb
source organism Streptococcus agalactiae
total genus 42
structure length 132
sequence length 132
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3oooA00
1WL9A 4S00A 4ZWOA 5CDLA 3Q6DA 2BWSA 2BN7A 4S2TP 5CDVA 4RZZA 2BWVA 2BHDA 5E2CA 2V3YA 1CHMA 3IL0A 4S01A 5CDEA 3OVKA 3IG4A 1WBQA 2BHAA 2V3XA 4B28A 1WL6A 3CTZA 4RGZ1 1W2MA 5CIKA 4FKCA 4R60A 5CNXA 2IW2A 2V3ZA 2BHBA 5CE6A 2ZSGA 2BH3A 3PEBA 3BITA 1WN1A 2HOWA 4ZWUA 3L7GA 1N51A 3QOCA 1W7VA 2BHCA 1JAWA 2BWWA 1PV9A 4QR8A 1WY2A 1A16A 3RVAA 5E5BA 1M35A 1KP0A 5FCHA 3BIQA 3BIPA 3OOOA 1WLRA 2OKNA 3CB5A 4S2RP 3O5VA 4ZNGA 2BWYA 3I7MA 5FCFA 4EGEA 4ZWPA 4RZYA 3PN9A 4PV4A 2BWUA 2BWXA 2BWTA 3CB6A 3L24A
chains in the Genus database with same CATH superfamily
1WL9A 4S00A 4ZWOA 5CDLA 3Q6DA 2BWSA 2BN7A 4S2TP 5CDVA 4RZZA 2BWVA 2BHDA 5E2CA 2V3YA 1CHMA 3IL0A 4S01A 5CDEA 3OVKA 3IG4A 1WBQA 2BHAA 2V3XA 4B28A 1WL6A 3CTZA 4RGZ1 1W2MA 5CIKA 4FKCA 4R60A 5CNXA 2IW2A 2V3ZA 2BHBA 5CE6A 2ZSGA 2BH3A 3PEBA 3BITA 1WN1A 2HOWA 4ZWUA 3L7GA 1N51A 3QOCA 1W7VA 2BHCA 1JAWA 2BWWA 1PV9A 4QR8A 1WY2A 1A16A 3RVAA 5E5BA 1M35A 1KP0A 5FCHA 3BIQA 3BIPA 3OOOA 1WLRA 2OKNA 3CB5A 4S2RP 3O5VA 4ZNGA 2BWYA 3I7MA 5FCFA 4EGEA 4ZWPA 4RZYA 3PN9A 4PV4A 2BWUA 2BWXA 2BWTA 3CB6A 3L24A
chains in the Genus database with same CATH topology
1WL9A 4S00A 4ZWOA 5CDLA 3Q6DA 2BWSA 2BN7A 4S2TP 5CDVA 4RZZA 2BWVA 2BHDA 5E2CA 2V3YA 1CHMA 3IL0A 4S01A 5CDEA 3OVKA 3IG4A 1WBQA 2BHAA 2V3XA 4B28A 1WL6A 3CTZA 4RGZ1 1W2MA 5CIKA 4FKCA 4R60A 5CNXA 2IW2A 2V3ZA 2BHBA 5CE6A 2ZSGA 2BH3A 3PEBA 3BITA 1WN1A 2HOWA 4ZWUA 3L7GA 1N51A 3QOCA 1W7VA 2BHCA 1JAWA 2BWWA 1PV9A 4QR8A 1WY2A 1A16A 3RVAA 5E5BA 1M35A 1KP0A 5FCHA 3BIQA 3BIPA 3OOOA 1WLRA 2OKNA 3CB5A 4S2RP 3O5VA 4ZNGA 2BWYA 3I7MA 5FCFA 4EGEA 4ZWPA 4RZYA 3PN9A 4PV4A 2BWUA 2BWXA 2BWTA 3CB6A 3L24A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WL9 A;  4S00 A;  4ZWO A;  5CDL A;  3Q6D A;  2BWS A;  2BN7 A;  4S2T P;  5CDV A;  4RZZ A;  2BWV A;  2BHD A;  5E2C A;  2V3Y A;  1CHM A;  3IL0 A;  4S01 A;  5CDE A;  3OVK A;  3IG4 A;  1WBQ A;  2BHA A;  2V3X A;  4B28 A;  1WL6 A;  3CTZ A;  4RGZ 1;  1W2M A;  5CIK A;  4FKC A;  4R60 A;  5CNX A;  2IW2 A;  2V3Z A;  2BHB A;  5CE6 A;  2ZSG A;  2BH3 A;  3PEB A;  3BIT A;  1WN1 A;  2HOW A;  4ZWU A;  3L7G A;  1N51 A;  3QOC A;  1W7V A;  2BHC A;  1JAW A;  2BWW A;  1PV9 A;  4QR8 A;  1WY2 A;  1A16 A;  3RVA A;  5E5B A;  1M35 A;  1KP0 A;  5FCH A;  3BIQ A;  3BIP A;  3OOO A;  1WLR A;  2OKN A;  3CB5 A;  4S2R P;  3O5V A;  4ZNG A;  2BWY A;  3I7M A;  5FCF A;  4EGE A;  4ZWP A;  4RZY A;  3PN9 A;  4PV4 A;  2BWU A;  2BWX A;  2BWT A;  3CB6 A;  3L24 A; 
#chains in the Genus database with same CATH topology
 1WL9 A;  4S00 A;  4ZWO A;  5CDL A;  3Q6D A;  2BWS A;  2BN7 A;  4S2T P;  5CDV A;  4RZZ A;  2BWV A;  2BHD A;  5E2C A;  2V3Y A;  1CHM A;  3IL0 A;  4S01 A;  5CDE A;  3OVK A;  3IG4 A;  1WBQ A;  2BHA A;  2V3X A;  4B28 A;  1WL6 A;  3CTZ A;  4RGZ 1;  1W2M A;  5CIK A;  4FKC A;  4R60 A;  5CNX A;  2IW2 A;  2V3Z A;  2BHB A;  5CE6 A;  2ZSG A;  2BH3 A;  3PEB A;  3BIT A;  1WN1 A;  2HOW A;  4ZWU A;  3L7G A;  1N51 A;  3QOC A;  1W7V A;  2BHC A;  1JAW A;  2BWW A;  1PV9 A;  4QR8 A;  1WY2 A;  1A16 A;  3RVA A;  5E5B A;  1M35 A;  1KP0 A;  5FCH A;  3BIQ A;  3BIP A;  3OOO A;  1WLR A;  2OKN A;  3CB5 A;  4S2R P;  3O5V A;  4ZNG A;  2BWY A;  3I7M A;  5FCF A;  4EGE A;  4ZWP A;  4RZY A;  3PN9 A;  4PV4 A;  2BWU A;  2BWX A;  2BWT A;  3CB6 A;  3L24 A; 
#chains in the Genus database with same CATH homology
 1WL9 A;  4S00 A;  4ZWO A;  5CDL A;  3Q6D A;  2BWS A;  2BN7 A;  4S2T P;  5CDV A;  4RZZ A;  2BWV A;  2BHD A;  5E2C A;  2V3Y A;  1CHM A;  3IL0 A;  4S01 A;  5CDE A;  3OVK A;  3IG4 A;  1WBQ A;  2BHA A;  2V3X A;  4B28 A;  1WL6 A;  3CTZ A;  4RGZ 1;  1W2M A;  5CIK A;  4FKC A;  4R60 A;  5CNX A;  2IW2 A;  2V3Z A;  2BHB A;  5CE6 A;  2ZSG A;  2BH3 A;  3PEB A;  3BIT A;  1WN1 A;  2HOW A;  4ZWU A;  3L7G A;  1N51 A;  3QOC A;  1W7V A;  2BHC A;  1JAW A;  2BWW A;  1PV9 A;  4QR8 A;  1WY2 A;  1A16 A;  3RVA A;  5E5B A;  1M35 A;  1KP0 A;  5FCH A;  3BIQ A;  3BIP A;  3OOO A;  1WLR A;  2OKN A;  3CB5 A;  4S2R P;  3O5V A;  4ZNG A;  2BWY A;  3I7M A;  5FCF A;  4EGE A;  4ZWP A;  4RZY A;  3PN9 A;  4PV4 A;  2BWU A;  2BWX A;  2BWT A;  3CB6 A;  3L24 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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