4R60A

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
total genus 128
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2014-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4r60A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4r60A02
2BHDA 2BHCA 2GA2A 5E2CA 4RZZA 1Y1NA 2GG7A 2DFIA 1C24A 3FMRA 4FLIA 4IKTA 2Q96A 5E5BA 4IECA 1QXZA 4U6CA 4FLKA 5D6FA 3D27A 1O0XA 3BIPA 2EVCA 2ADUA 4IKRA 2NQ7A 1QXWA 4JUQA 4HXXA 5CIKA 4U6EA 4S01A 1WL6A 1MATA 4U6JA 2BWVA 4RGZ1 3CB5A 3PKAA 2B3KA 2Q94A 4S2RP 3RVAA 1YW8A 4R60A 4FLJA 3PKEA 2V3YA 2Q93A 2GU6A 4S2TP 2MATA 4IKUA 3TAVA 4FLLA 2HOWA 3PEBA 2GU5A 3FMQA 4PV4A 5CDVA 1QZYA 1XGNA 2EA2A 2P98A 2OKNA 4U73A 1YW7A 4U71A 2V3XA 2BHBA 2EA4A 3QOCA 3PN9A 1C22A 1KQ9A 3L7GA 3MR1A 2EVMA 2Q95A 2IW2A 3IU7A 1QXYA 2ZSGA 4FUKA 4IDYA 2EVOA 4RZYA 1N51A 4U69A 1WN1A 4IKSA 1C21A 3OOOA 4FKCA 3MATA 2P9AA 1CHMA 4ZWPA 2G6PA 4A6VA 3S6BA 4U70A 2BWYA 1A16A 2GG0A 4Z7MA 2B3LA 1R5HA 4MATA 2BN7A 3RORA 4B28A 3FM3A 1XGOA 2GG3A 3PKBA 2Q8KA 1YVMA 4U76A 2BHAA 4IF7A 3MX6A 1XNZA 2V6CA 4KM3A 5JI6A 2GG5A 2GTXA 1YJ3A 4OOKA 2BWXA 2Q92A 4U6ZA 1BN5A 2GG9A 2GGCA 3PKDA 1B6AA 4FO8A 4U1BA 3IL0A 3Q6DA 4IPAA 1WBQA 1BOAA 5CLSA 3BIQA 3O5VA 1R58A 2BH3A 4PNCA 3IU8A 2V3ZA 1YW9A 1B59A 5D6EA 2B3HA 3TB5A 1WLRA 1KQ0A 2BWSA 3OVKA 3IU9A 1XGSA 3I7MA 5FCFA 3PKCA 1C23A 2BWTA 2GZ5A 2BWWA 1WY2A 4A6WA 2GG2A 4FO7A 4U6WA 5CNXA 1WKMA 2GGBA 5CE6A 2GG8A 1M35A 2NQ6A 1W7VA 1C27A 4ZNGA 1WL9A 1KP0A 1W2MA 4ZWUA 1PV9A 2P99A 5CDEA 3IG4A 4QR8A 3L24A 3CTZA 4EGEA 1R5GA 2GU4A 5JFRA 2BWUA 5FCHA 3BITA 1XGMA 1JAWA 2BB7A 5JHUA 3CB6A 4IU6A 2OAZA 2GU7A 4ZWOA 4U75A 4S00A 5CDLA
chains in the Genus database with same CATH superfamily
2BHDA 2BHCA 2GA2A 5E2CA 4RZZA 1Y1NA 2GG7A 2DFIA 1C24A 3FMRA 4FLIA 4IKTA 2Q96A 5E5BA 4IECA 1QXZA 4U6CA 4FLKA 5D6FA 3D27A 1O0XA 3BIPA 2EVCA 2ADUA 4IKRA 2NQ7A 1QXWA 4JUQA 4HXXA 5CIKA 4U6EA 4S01A 1WL6A 1MATA 4U6JA 2BWVA 4RGZ1 3CB5A 3PKAA 2B3KA 2Q94A 4S2RP 3RVAA 1YW8A 4R60A 4FLJA 3PKEA 2V3YA 2Q93A 2GU6A 4S2TP 2MATA 4IKUA 3TAVA 4FLLA 2HOWA 3PEBA 2GU5A 3FMQA 4PV4A 5CDVA 1QZYA 1XGNA 2EA2A 2P98A 2OKNA 4U73A 1YW7A 4U71A 2V3XA 2BHBA 2EA4A 3QOCA 3PN9A 1C22A 1KQ9A 3L7GA 3MR1A 2EVMA 2Q95A 2IW2A 3IU7A 1QXYA 2ZSGA 4FUKA 4IDYA 2EVOA 4RZYA 1N51A 4U69A 1WN1A 4IKSA 1C21A 3OOOA 4FKCA 3MATA 2P9AA 1CHMA 4ZWPA 2G6PA 4A6VA 3S6BA 4U70A 2BWYA 1A16A 2GG0A 4Z7MA 2B3LA 1R5HA 4MATA 2BN7A 3RORA 4B28A 3FM3A 1XGOA 2GG3A 3PKBA 2Q8KA 1YVMA 4U76A 2BHAA 4IF7A 3MX6A 1XNZA 2V6CA 4KM3A 5JI6A 2GG5A 2GTXA 1YJ3A 4OOKA 2BWXA 2Q92A 4U6ZA 1BN5A 2GG9A 2GGCA 3PKDA 1B6AA 4FO8A 4U1BA 3IL0A 3Q6DA 4IPAA 1WBQA 1BOAA 5CLSA 3BIQA 3O5VA 1R58A 2BH3A 4PNCA 3IU8A 2V3ZA 1YW9A 1B59A 5D6EA 2B3HA 3TB5A 1WLRA 1KQ0A 2BWSA 3OVKA 3IU9A 1XGSA 3I7MA 5FCFA 3PKCA 1C23A 2BWTA 2GZ5A 2BWWA 1WY2A 4A6WA 2GG2A 4FO7A 4U6WA 5CNXA 1WKMA 2GGBA 5CE6A 2GG8A 1M35A 2NQ6A 1W7VA 1C27A 4ZNGA 1WL9A 1KP0A 1W2MA 4ZWUA 1PV9A 2P99A 5CDEA 3IG4A 4QR8A 3L24A 3CTZA 4EGEA 1R5GA 2GU4A 5JFRA 2BWUA 5FCHA 3BITA 1XGMA 1JAWA 2BB7A 5JHUA 3CB6A 4IU6A 2OAZA 2GU7A 4ZWOA 4U75A 4S00A 5CDLA
chains in the Genus database with same CATH topology
2BHDA 2BHCA 2GA2A 5E2CA 4RZZA 1Y1NA 2GG7A 2DFIA 1C24A 3FMRA 4FLIA 4IKTA 2Q96A 5E5BA 4IECA 1QXZA 4U6CA 4FLKA 5D6FA 3D27A 1O0XA 3BIPA 2EVCA 2ADUA 4IKRA 2NQ7A 1QXWA 4JUQA 4HXXA 5CIKA 4U6EA 4S01A 1WL6A 1MATA 4U6JA 2BWVA 4RGZ1 3CB5A 3PKAA 2B3KA 2Q94A 4S2RP 3RVAA 1YW8A 4R60A 4FLJA 3PKEA 2V3YA 2Q93A 2GU6A 4S2TP 2MATA 4IKUA 3TAVA 4FLLA 2HOWA 3PEBA 2GU5A 3FMQA 4PV4A 5CDVA 1QZYA 1XGNA 2EA2A 2P98A 2OKNA 4U73A 1YW7A 4U71A 2V3XA 2BHBA 2EA4A 3QOCA 3PN9A 1C22A 1KQ9A 3L7GA 3MR1A 2EVMA 2Q95A 2IW2A 3IU7A 1QXYA 2ZSGA 4FUKA 4IDYA 2EVOA 4RZYA 1N51A 4U69A 1WN1A 4IKSA 1C21A 3OOOA 4FKCA 3MATA 2P9AA 1CHMA 4ZWPA 2G6PA 4A6VA 3S6BA 4U70A 2BWYA 1A16A 2GG0A 4Z7MA 2B3LA 1R5HA 4MATA 2BN7A 3RORA 4B28A 3FM3A 1XGOA 2GG3A 3PKBA 2Q8KA 1YVMA 4U76A 2BHAA 4IF7A 3MX6A 1XNZA 2V6CA 4KM3A 5JI6A 2GG5A 2GTXA 1YJ3A 4OOKA 2BWXA 2Q92A 4U6ZA 1BN5A 2GG9A 2GGCA 3PKDA 1B6AA 4FO8A 4U1BA 3IL0A 3Q6DA 4IPAA 1WBQA 1BOAA 5CLSA 3BIQA 3O5VA 1R58A 2BH3A 4PNCA 3IU8A 2V3ZA 1YW9A 1B59A 5D6EA 2B3HA 3TB5A 1WLRA 1KQ0A 2BWSA 3OVKA 3IU9A 1XGSA 3I7MA 5FCFA 3PKCA 1C23A 2BWTA 2GZ5A 2BWWA 1WY2A 4A6WA 2GG2A 4FO7A 4U6WA 5CNXA 1WKMA 2GGBA 5CE6A 2GG8A 1M35A 2NQ6A 1W7VA 1C27A 4ZNGA 1WL9A 1KP0A 1W2MA 4ZWUA 1PV9A 2P99A 5CDEA 3IG4A 4QR8A 3L24A 3CTZA 4EGEA 1R5GA 2GU4A 5JFRA 2BWUA 5FCHA 3BITA 1XGMA 1JAWA 2BB7A 5JHUA 3CB6A 4IU6A 2OAZA 2GU7A 4ZWOA 4U75A 4S00A 5CDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BHD A;  2BHC A;  2GA2 A;  5E2C A;  4RZZ A;  1Y1N A;  2GG7 A;  2DFI A;  1C24 A;  3FMR A;  4FLI A;  4IKT A;  2Q96 A;  5E5B A;  4IEC A;  1QXZ A;  4U6C A;  4FLK A;  5D6F A;  3D27 A;  1O0X A;  3BIP A;  2EVC A;  2ADU A;  4IKR A;  2NQ7 A;  1QXW A;  4JUQ A;  4HXX A;  5CIK A;  4U6E A;  4S01 A;  1WL6 A;  1MAT A;  4U6J A;  2BWV A;  4RGZ 1;  3CB5 A;  3PKA A;  2B3K A;  2Q94 A;  4S2R P;  3RVA A;  1YW8 A;  4R60 A;  4FLJ A;  3PKE A;  2V3Y A;  2Q93 A;  2GU6 A;  4S2T P;  2MAT A;  4IKU A;  3TAV A;  4FLL A;  2HOW A;  3PEB A;  2GU5 A;  3FMQ A;  4PV4 A;  5CDV A;  1QZY A;  1XGN A;  2EA2 A;  2P98 A;  2OKN A;  4U73 A;  1YW7 A;  4U71 A;  2V3X A;  2BHB A;  2EA4 A;  3QOC A;  3PN9 A;  1C22 A;  1KQ9 A;  3L7G A;  3MR1 A;  2EVM A;  2Q95 A;  2IW2 A;  3IU7 A;  1QXY A;  2ZSG A;  4FUK A;  4IDY A;  2EVO A;  4RZY A;  1N51 A;  4U69 A;  1WN1 A;  4IKS A;  1C21 A;  3OOO A;  4FKC A;  3MAT A;  2P9A A;  1CHM A;  4ZWP A;  2G6P A;  4A6V A;  3S6B A;  4U70 A;  2BWY A;  1A16 A;  2GG0 A;  4Z7M A;  2B3L A;  1R5H A;  4MAT A;  2BN7 A;  3ROR A;  4B28 A;  3FM3 A;  1XGO A;  2GG3 A;  3PKB A;  2Q8K A;  1YVM A;  4U76 A;  2BHA A;  4IF7 A;  3MX6 A;  1XNZ A;  2V6C A;  4KM3 A;  5JI6 A;  2GG5 A;  2GTX A;  1YJ3 A;  4OOK A;  2BWX A;  2Q92 A;  4U6Z A;  1BN5 A;  2GG9 A;  2GGC A;  3PKD A;  1B6A A;  4FO8 A;  4U1B A;  3IL0 A;  3Q6D A;  4IPA A;  1WBQ A;  1BOA A;  5CLS A;  3BIQ A;  3O5V A;  1R58 A;  2BH3 A;  4PNC A;  3IU8 A;  2V3Z A;  1YW9 A;  1B59 A;  5D6E A;  2B3H A;  3TB5 A;  1WLR A;  1KQ0 A;  2BWS A;  3OVK A;  3IU9 A;  1XGS A;  3I7M A;  5FCF A;  3PKC A;  1C23 A;  2BWT A;  2GZ5 A;  2BWW A;  1WY2 A;  4A6W A;  2GG2 A;  4FO7 A;  4U6W A;  5CNX A;  1WKM A;  2GGB A;  5CE6 A;  2GG8 A;  1M35 A;  2NQ6 A;  1W7V A;  1C27 A;  4ZNG A;  1WL9 A;  1KP0 A;  1W2M A;  4ZWU A;  1PV9 A;  2P99 A;  5CDE A;  3IG4 A;  4QR8 A;  3L24 A;  3CTZ A;  4EGE A;  1R5G A;  2GU4 A;  5JFR A;  2BWU A;  5FCH A;  3BIT A;  1XGM A;  1JAW A;  2BB7 A;  5JHU A;  3CB6 A;  4IU6 A;  2OAZ A;  2GU7 A;  4ZWO A;  4U75 A;  4S00 A;  5CDL A; 
#chains in the Genus database with same CATH topology
 2BHD A;  2BHC A;  2GA2 A;  5E2C A;  4RZZ A;  1Y1N A;  2GG7 A;  2DFI A;  1C24 A;  3FMR A;  4FLI A;  4IKT A;  2Q96 A;  5E5B A;  4IEC A;  1QXZ A;  4U6C A;  4FLK A;  5D6F A;  3D27 A;  1O0X A;  3BIP A;  2EVC A;  2ADU A;  4IKR A;  2NQ7 A;  1QXW A;  4JUQ A;  4HXX A;  5CIK A;  4U6E A;  4S01 A;  1WL6 A;  1MAT A;  4U6J A;  2BWV A;  4RGZ 1;  3CB5 A;  3PKA A;  2B3K A;  2Q94 A;  4S2R P;  3RVA A;  1YW8 A;  4R60 A;  4FLJ A;  3PKE A;  2V3Y A;  2Q93 A;  2GU6 A;  4S2T P;  2MAT A;  4IKU A;  3TAV A;  4FLL A;  2HOW A;  3PEB A;  2GU5 A;  3FMQ A;  4PV4 A;  5CDV A;  1QZY A;  1XGN A;  2EA2 A;  2P98 A;  2OKN A;  4U73 A;  1YW7 A;  4U71 A;  2V3X A;  2BHB A;  2EA4 A;  3QOC A;  3PN9 A;  1C22 A;  1KQ9 A;  3L7G A;  3MR1 A;  2EVM A;  2Q95 A;  2IW2 A;  3IU7 A;  1QXY A;  2ZSG A;  4FUK A;  4IDY A;  2EVO A;  4RZY A;  1N51 A;  4U69 A;  1WN1 A;  4IKS A;  1C21 A;  3OOO A;  4FKC A;  3MAT A;  2P9A A;  1CHM A;  4ZWP A;  2G6P A;  4A6V A;  3S6B A;  4U70 A;  2BWY A;  1A16 A;  2GG0 A;  4Z7M A;  2B3L A;  1R5H A;  4MAT A;  2BN7 A;  3ROR A;  4B28 A;  3FM3 A;  1XGO A;  2GG3 A;  3PKB A;  2Q8K A;  1YVM A;  4U76 A;  2BHA A;  4IF7 A;  3MX6 A;  1XNZ A;  2V6C A;  4KM3 A;  5JI6 A;  2GG5 A;  2GTX A;  1YJ3 A;  4OOK A;  2BWX A;  2Q92 A;  4U6Z A;  1BN5 A;  2GG9 A;  2GGC A;  3PKD A;  1B6A A;  4FO8 A;  4U1B A;  3IL0 A;  3Q6D A;  4IPA A;  1WBQ A;  1BOA A;  5CLS A;  3BIQ A;  3O5V A;  1R58 A;  2BH3 A;  4PNC A;  3IU8 A;  2V3Z A;  1YW9 A;  1B59 A;  5D6E A;  2B3H A;  3TB5 A;  1WLR A;  1KQ0 A;  2BWS A;  3OVK A;  3IU9 A;  1XGS A;  3I7M A;  5FCF A;  3PKC A;  1C23 A;  2BWT A;  2GZ5 A;  2BWW A;  1WY2 A;  4A6W A;  2GG2 A;  4FO7 A;  4U6W A;  5CNX A;  1WKM A;  2GGB A;  5CE6 A;  2GG8 A;  1M35 A;  2NQ6 A;  1W7V A;  1C27 A;  4ZNG A;  1WL9 A;  1KP0 A;  1W2M A;  4ZWU A;  1PV9 A;  2P99 A;  5CDE A;  3IG4 A;  4QR8 A;  3L24 A;  3CTZ A;  4EGE A;  1R5G A;  2GU4 A;  5JFR A;  2BWU A;  5FCH A;  3BIT A;  1XGM A;  1JAW A;  2BB7 A;  5JHU A;  3CB6 A;  4IU6 A;  2OAZ A;  2GU7 A;  4ZWO A;  4U75 A;  4S00 A;  5CDL A; 
#chains in the Genus database with same CATH homology
 2BHD A;  2BHC A;  2GA2 A;  5E2C A;  4RZZ A;  1Y1N A;  2GG7 A;  2DFI A;  1C24 A;  3FMR A;  4FLI A;  4IKT A;  2Q96 A;  5E5B A;  4IEC A;  1QXZ A;  4U6C A;  4FLK A;  5D6F A;  3D27 A;  1O0X A;  3BIP A;  2EVC A;  2ADU A;  4IKR A;  2NQ7 A;  1QXW A;  4JUQ A;  4HXX A;  5CIK A;  4U6E A;  4S01 A;  1WL6 A;  1MAT A;  4U6J A;  2BWV A;  4RGZ 1;  3CB5 A;  3PKA A;  2B3K A;  2Q94 A;  4S2R P;  3RVA A;  1YW8 A;  4R60 A;  4FLJ A;  3PKE A;  2V3Y A;  2Q93 A;  2GU6 A;  4S2T P;  2MAT A;  4IKU A;  3TAV A;  4FLL A;  2HOW A;  3PEB A;  2GU5 A;  3FMQ A;  4PV4 A;  5CDV A;  1QZY A;  1XGN A;  2EA2 A;  2P98 A;  2OKN A;  4U73 A;  1YW7 A;  4U71 A;  2V3X A;  2BHB A;  2EA4 A;  3QOC A;  3PN9 A;  1C22 A;  1KQ9 A;  3L7G A;  3MR1 A;  2EVM A;  2Q95 A;  2IW2 A;  3IU7 A;  1QXY A;  2ZSG A;  4FUK A;  4IDY A;  2EVO A;  4RZY A;  1N51 A;  4U69 A;  1WN1 A;  4IKS A;  1C21 A;  3OOO A;  4FKC A;  3MAT A;  2P9A A;  1CHM A;  4ZWP A;  2G6P A;  4A6V A;  3S6B A;  4U70 A;  2BWY A;  1A16 A;  2GG0 A;  4Z7M A;  2B3L A;  1R5H A;  4MAT A;  2BN7 A;  3ROR A;  4B28 A;  3FM3 A;  1XGO A;  2GG3 A;  3PKB A;  2Q8K A;  1YVM A;  4U76 A;  2BHA A;  4IF7 A;  3MX6 A;  1XNZ A;  2V6C A;  4KM3 A;  5JI6 A;  2GG5 A;  2GTX A;  1YJ3 A;  4OOK A;  2BWX A;  2Q92 A;  4U6Z A;  1BN5 A;  2GG9 A;  2GGC A;  3PKD A;  1B6A A;  4FO8 A;  4U1B A;  3IL0 A;  3Q6D A;  4IPA A;  1WBQ A;  1BOA A;  5CLS A;  3BIQ A;  3O5V A;  1R58 A;  2BH3 A;  4PNC A;  3IU8 A;  2V3Z A;  1YW9 A;  1B59 A;  5D6E A;  2B3H A;  3TB5 A;  1WLR A;  1KQ0 A;  2BWS A;  3OVK A;  3IU9 A;  1XGS A;  3I7M A;  5FCF A;  3PKC A;  1C23 A;  2BWT A;  2GZ5 A;  2BWW A;  1WY2 A;  4A6W A;  2GG2 A;  4FO7 A;  4U6W A;  5CNX A;  1WKM A;  2GGB A;  5CE6 A;  2GG8 A;  1M35 A;  2NQ6 A;  1W7V A;  1C27 A;  4ZNG A;  1WL9 A;  1KP0 A;  1W2M A;  4ZWU A;  1PV9 A;  2P99 A;  5CDE A;  3IG4 A;  4QR8 A;  3L24 A;  3CTZ A;  4EGE A;  1R5G A;  2GU4 A;  5JFR A;  2BWU A;  5FCH A;  3BIT A;  1XGM A;  1JAW A;  2BB7 A;  5JHU A;  3CB6 A;  4IU6 A;  2OAZ A;  2GU7 A;  4ZWO A;  4U75 A;  4S00 A;  5CDL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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