4R60A

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
total genus 128
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2014-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4r60A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4r60A02
4U71A 4PV4A 1R5HA 2GU4A 2BWVA 4EGEA 5E2CA 1C23A 3FM3A 4FLIA 3OVKA 2BH3A 3IU8A 3D27A 4A6VA 4B28A 5E5BA 4A6WA 1YW9A 1XGOA 4S2TP 4U6WA 2B3HA 1WL9A 3IG4A 3MX6A 1B59A 3IU7A 4S00A 1CHMA 2EA2A 2BB7A 2BWWA 1KP0A 3BITA 4FKCA 4U1BA 4ZWUA 4U6CA 2Q93A 3BIQA 2Q96A 3FMQA 1KQ9A 3PEBA 2GG5A 4RZYA 1BOAA 2GG3A 3PN9A 4IKTA 1A16A 3S6BA 3OOOA 4S2RP 3CB5A 1YW7A 1WY2A 4ZWOA 5D6FA 4RZZA 1YW8A 2BHBA 3CTZA 2GU7A 2ADUA 2Q94A 3FMRA 2GG2A 3MATA 4IKSA 5CDLA 3I7MA 5CE6A 1QXYA 1MATA 2B3KA 4IU6A 2GU6A 1M35A 4FUKA 4JUQA 1WN1A 2Q92A 2OAZA 3RORA 2GA2A 4IECA 4U6ZA 4U70A 5FCFA 3Q6DA 2BN7A 4FLKA 2GZ5A 1WLRA 2V6CA 1C22A 1XGMA 1XNZA 2P98A 2B3LA 3RVAA 2DFIA 1XGSA 2GGCA 5CNXA 2BWSA 1C21A 4ZNGA 3TB5A 1YVMA 3MR1A 2BWYA 4IDYA 1KQ0A 4FO7A 2V3ZA 1B6AA 1PV9A 3IL0A 5CDEA 2EVOA 2P99A 4ZWPA 5D6EA 1YJ3A 2GG0A 1N51A 2BWXA 1W7VA 2Q8KA 2GGBA 5CIKA 1BN5A 3L7GA 2EVCA 3PKBA 5FCHA 2BWTA 4HXXA 3BIPA 3O5VA 2NQ7A 4IKUA 1WBQA 2NQ6A 3QOCA 4MATA 4U69A 4U75A 3PKEA 2IW2A 1XGNA 4IKRA 4FLLA 1R5GA 2HOWA 4IPAA 4R60A 1QXZA 4U6JA 1C24A 1O0XA 1WKMA 1QXWA 2GU5A 3L24A 2V3XA 4OOKA 2GG8A 2G6PA 2EVMA 4PNCA 2MATA 4KM3A 1W2MA 4FO8A 1WL6A 1Y1NA 2Q95A 5JHUA 4U6EA 1JAWA 4S01A 5CDVA 3TAVA 2GG7A 1C27A 4RGZ1 2GTXA 1R58A 4QR8A 1QZYA 3PKDA 2BHCA 2BHAA 4Z7MA 2EA4A 3IU9A 2V3YA 3CB6A 3PKCA 5CLSA 2OKNA 2BHDA 5JI6A 4FLJA 2ZSGA 2P9AA 5JFRA 2GG9A 4IF7A 2BWUA 3PKAA 4U73A 4U76A
chains in the Genus database with same CATH superfamily
4U71A 4PV4A 1R5HA 2GU4A 2BWVA 4EGEA 5E2CA 1C23A 3FM3A 4FLIA 3OVKA 2BH3A 3IU8A 3D27A 4A6VA 4B28A 5E5BA 4A6WA 1YW9A 1XGOA 4S2TP 4U6WA 2B3HA 1WL9A 3IG4A 3MX6A 1B59A 3IU7A 4S00A 1CHMA 2EA2A 2BB7A 2BWWA 1KP0A 3BITA 4FKCA 4U1BA 4ZWUA 4U6CA 2Q93A 3BIQA 2Q96A 3FMQA 1KQ9A 3PEBA 2GG5A 4RZYA 1BOAA 2GG3A 3PN9A 4IKTA 1A16A 3S6BA 3OOOA 4S2RP 3CB5A 1YW7A 1WY2A 4ZWOA 5D6FA 4RZZA 1YW8A 2BHBA 3CTZA 2GU7A 2ADUA 2Q94A 3FMRA 2GG2A 3MATA 4IKSA 5CDLA 3I7MA 5CE6A 1QXYA 1MATA 2B3KA 4IU6A 2GU6A 1M35A 4FUKA 4JUQA 1WN1A 2Q92A 2OAZA 3RORA 2GA2A 4IECA 4U6ZA 4U70A 5FCFA 3Q6DA 2BN7A 4FLKA 2GZ5A 1WLRA 2V6CA 1C22A 1XGMA 1XNZA 2P98A 2B3LA 3RVAA 2DFIA 1XGSA 2GGCA 5CNXA 2BWSA 1C21A 4ZNGA 3TB5A 1YVMA 3MR1A 2BWYA 4IDYA 1KQ0A 4FO7A 2V3ZA 1B6AA 1PV9A 3IL0A 5CDEA 2EVOA 2P99A 4ZWPA 5D6EA 1YJ3A 2GG0A 1N51A 2BWXA 1W7VA 2Q8KA 2GGBA 5CIKA 1BN5A 3L7GA 2EVCA 3PKBA 5FCHA 2BWTA 4HXXA 3BIPA 3O5VA 2NQ7A 4IKUA 1WBQA 2NQ6A 3QOCA 4MATA 4U69A 4U75A 3PKEA 2IW2A 1XGNA 4IKRA 4FLLA 1R5GA 2HOWA 4IPAA 4R60A 1QXZA 4U6JA 1C24A 1O0XA 1WKMA 1QXWA 2GU5A 3L24A 2V3XA 4OOKA 2GG8A 2G6PA 2EVMA 4PNCA 2MATA 4KM3A 1W2MA 4FO8A 1WL6A 1Y1NA 2Q95A 5JHUA 4U6EA 1JAWA 4S01A 5CDVA 3TAVA 2GG7A 1C27A 4RGZ1 2GTXA 1R58A 4QR8A 1QZYA 3PKDA 2BHCA 2BHAA 4Z7MA 2EA4A 3IU9A 2V3YA 3CB6A 3PKCA 5CLSA 2OKNA 2BHDA 5JI6A 4FLJA 2ZSGA 2P9AA 5JFRA 2GG9A 4IF7A 2BWUA 3PKAA 4U73A 4U76A
chains in the Genus database with same CATH topology
4U71A 4PV4A 1R5HA 2GU4A 2BWVA 4EGEA 5E2CA 1C23A 3FM3A 4FLIA 3OVKA 2BH3A 3IU8A 3D27A 4A6VA 4B28A 5E5BA 4A6WA 1YW9A 1XGOA 4S2TP 4U6WA 2B3HA 1WL9A 3IG4A 3MX6A 1B59A 3IU7A 4S00A 1CHMA 2EA2A 2BB7A 2BWWA 1KP0A 3BITA 4FKCA 4U1BA 4ZWUA 4U6CA 2Q93A 3BIQA 2Q96A 3FMQA 1KQ9A 3PEBA 2GG5A 4RZYA 1BOAA 2GG3A 3PN9A 4IKTA 1A16A 3S6BA 3OOOA 4S2RP 3CB5A 1YW7A 1WY2A 4ZWOA 5D6FA 4RZZA 1YW8A 2BHBA 3CTZA 2GU7A 2ADUA 2Q94A 3FMRA 2GG2A 3MATA 4IKSA 5CDLA 3I7MA 5CE6A 1QXYA 1MATA 2B3KA 4IU6A 2GU6A 1M35A 4FUKA 4JUQA 1WN1A 2Q92A 2OAZA 3RORA 2GA2A 4IECA 4U6ZA 4U70A 5FCFA 3Q6DA 2BN7A 4FLKA 2GZ5A 1WLRA 2V6CA 1C22A 1XGMA 1XNZA 2P98A 2B3LA 3RVAA 2DFIA 1XGSA 2GGCA 5CNXA 2BWSA 1C21A 4ZNGA 3TB5A 1YVMA 3MR1A 2BWYA 4IDYA 1KQ0A 4FO7A 2V3ZA 1B6AA 1PV9A 3IL0A 5CDEA 2EVOA 2P99A 4ZWPA 5D6EA 1YJ3A 2GG0A 1N51A 2BWXA 1W7VA 2Q8KA 2GGBA 5CIKA 1BN5A 3L7GA 2EVCA 3PKBA 5FCHA 2BWTA 4HXXA 3BIPA 3O5VA 2NQ7A 4IKUA 1WBQA 2NQ6A 3QOCA 4MATA 4U69A 4U75A 3PKEA 2IW2A 1XGNA 4IKRA 4FLLA 1R5GA 2HOWA 4IPAA 4R60A 1QXZA 4U6JA 1C24A 1O0XA 1WKMA 1QXWA 2GU5A 3L24A 2V3XA 4OOKA 2GG8A 2G6PA 2EVMA 4PNCA 2MATA 4KM3A 1W2MA 4FO8A 1WL6A 1Y1NA 2Q95A 5JHUA 4U6EA 1JAWA 4S01A 5CDVA 3TAVA 2GG7A 1C27A 4RGZ1 2GTXA 1R58A 4QR8A 1QZYA 3PKDA 2BHCA 2BHAA 4Z7MA 2EA4A 3IU9A 2V3YA 3CB6A 3PKCA 5CLSA 2OKNA 2BHDA 5JI6A 4FLJA 2ZSGA 2P9AA 5JFRA 2GG9A 4IF7A 2BWUA 3PKAA 4U73A 4U76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U71 A;  4PV4 A;  1R5H A;  2GU4 A;  2BWV A;  4EGE A;  5E2C A;  1C23 A;  3FM3 A;  4FLI A;  3OVK A;  2BH3 A;  3IU8 A;  3D27 A;  4A6V A;  4B28 A;  5E5B A;  4A6W A;  1YW9 A;  1XGO A;  4S2T P;  4U6W A;  2B3H A;  1WL9 A;  3IG4 A;  3MX6 A;  1B59 A;  3IU7 A;  4S00 A;  1CHM A;  2EA2 A;  2BB7 A;  2BWW A;  1KP0 A;  3BIT A;  4FKC A;  4U1B A;  4ZWU A;  4U6C A;  2Q93 A;  3BIQ A;  2Q96 A;  3FMQ A;  1KQ9 A;  3PEB A;  2GG5 A;  4RZY A;  1BOA A;  2GG3 A;  3PN9 A;  4IKT A;  1A16 A;  3S6B A;  3OOO A;  4S2R P;  3CB5 A;  1YW7 A;  1WY2 A;  4ZWO A;  5D6F A;  4RZZ A;  1YW8 A;  2BHB A;  3CTZ A;  2GU7 A;  2ADU A;  2Q94 A;  3FMR A;  2GG2 A;  3MAT A;  4IKS A;  5CDL A;  3I7M A;  5CE6 A;  1QXY A;  1MAT A;  2B3K A;  4IU6 A;  2GU6 A;  1M35 A;  4FUK A;  4JUQ A;  1WN1 A;  2Q92 A;  2OAZ A;  3ROR A;  2GA2 A;  4IEC A;  4U6Z A;  4U70 A;  5FCF A;  3Q6D A;  2BN7 A;  4FLK A;  2GZ5 A;  1WLR A;  2V6C A;  1C22 A;  1XGM A;  1XNZ A;  2P98 A;  2B3L A;  3RVA A;  2DFI A;  1XGS A;  2GGC A;  5CNX A;  2BWS A;  1C21 A;  4ZNG A;  3TB5 A;  1YVM A;  3MR1 A;  2BWY A;  4IDY A;  1KQ0 A;  4FO7 A;  2V3Z A;  1B6A A;  1PV9 A;  3IL0 A;  5CDE A;  2EVO A;  2P99 A;  4ZWP A;  5D6E A;  1YJ3 A;  2GG0 A;  1N51 A;  2BWX A;  1W7V A;  2Q8K A;  2GGB A;  5CIK A;  1BN5 A;  3L7G A;  2EVC A;  3PKB A;  5FCH A;  2BWT A;  4HXX A;  3BIP A;  3O5V A;  2NQ7 A;  4IKU A;  1WBQ A;  2NQ6 A;  3QOC A;  4MAT A;  4U69 A;  4U75 A;  3PKE A;  2IW2 A;  1XGN A;  4IKR A;  4FLL A;  1R5G A;  2HOW A;  4IPA A;  4R60 A;  1QXZ A;  4U6J A;  1C24 A;  1O0X A;  1WKM A;  1QXW A;  2GU5 A;  3L24 A;  2V3X A;  4OOK A;  2GG8 A;  2G6P A;  2EVM A;  4PNC A;  2MAT A;  4KM3 A;  1W2M A;  4FO8 A;  1WL6 A;  1Y1N A;  2Q95 A;  5JHU A;  4U6E A;  1JAW A;  4S01 A;  5CDV A;  3TAV A;  2GG7 A;  1C27 A;  4RGZ 1;  2GTX A;  1R58 A;  4QR8 A;  1QZY A;  3PKD A;  2BHC A;  2BHA A;  4Z7M A;  2EA4 A;  3IU9 A;  2V3Y A;  3CB6 A;  3PKC A;  5CLS A;  2OKN A;  2BHD A;  5JI6 A;  4FLJ A;  2ZSG A;  2P9A A;  5JFR A;  2GG9 A;  4IF7 A;  2BWU A;  3PKA A;  4U73 A;  4U76 A; 
#chains in the Genus database with same CATH topology
 4U71 A;  4PV4 A;  1R5H A;  2GU4 A;  2BWV A;  4EGE A;  5E2C A;  1C23 A;  3FM3 A;  4FLI A;  3OVK A;  2BH3 A;  3IU8 A;  3D27 A;  4A6V A;  4B28 A;  5E5B A;  4A6W A;  1YW9 A;  1XGO A;  4S2T P;  4U6W A;  2B3H A;  1WL9 A;  3IG4 A;  3MX6 A;  1B59 A;  3IU7 A;  4S00 A;  1CHM A;  2EA2 A;  2BB7 A;  2BWW A;  1KP0 A;  3BIT A;  4FKC A;  4U1B A;  4ZWU A;  4U6C A;  2Q93 A;  3BIQ A;  2Q96 A;  3FMQ A;  1KQ9 A;  3PEB A;  2GG5 A;  4RZY A;  1BOA A;  2GG3 A;  3PN9 A;  4IKT A;  1A16 A;  3S6B A;  3OOO A;  4S2R P;  3CB5 A;  1YW7 A;  1WY2 A;  4ZWO A;  5D6F A;  4RZZ A;  1YW8 A;  2BHB A;  3CTZ A;  2GU7 A;  2ADU A;  2Q94 A;  3FMR A;  2GG2 A;  3MAT A;  4IKS A;  5CDL A;  3I7M A;  5CE6 A;  1QXY A;  1MAT A;  2B3K A;  4IU6 A;  2GU6 A;  1M35 A;  4FUK A;  4JUQ A;  1WN1 A;  2Q92 A;  2OAZ A;  3ROR A;  2GA2 A;  4IEC A;  4U6Z A;  4U70 A;  5FCF A;  3Q6D A;  2BN7 A;  4FLK A;  2GZ5 A;  1WLR A;  2V6C A;  1C22 A;  1XGM A;  1XNZ A;  2P98 A;  2B3L A;  3RVA A;  2DFI A;  1XGS A;  2GGC A;  5CNX A;  2BWS A;  1C21 A;  4ZNG A;  3TB5 A;  1YVM A;  3MR1 A;  2BWY A;  4IDY A;  1KQ0 A;  4FO7 A;  2V3Z A;  1B6A A;  1PV9 A;  3IL0 A;  5CDE A;  2EVO A;  2P99 A;  4ZWP A;  5D6E A;  1YJ3 A;  2GG0 A;  1N51 A;  2BWX A;  1W7V A;  2Q8K A;  2GGB A;  5CIK A;  1BN5 A;  3L7G A;  2EVC A;  3PKB A;  5FCH A;  2BWT A;  4HXX A;  3BIP A;  3O5V A;  2NQ7 A;  4IKU A;  1WBQ A;  2NQ6 A;  3QOC A;  4MAT A;  4U69 A;  4U75 A;  3PKE A;  2IW2 A;  1XGN A;  4IKR A;  4FLL A;  1R5G A;  2HOW A;  4IPA A;  4R60 A;  1QXZ A;  4U6J A;  1C24 A;  1O0X A;  1WKM A;  1QXW A;  2GU5 A;  3L24 A;  2V3X A;  4OOK A;  2GG8 A;  2G6P A;  2EVM A;  4PNC A;  2MAT A;  4KM3 A;  1W2M A;  4FO8 A;  1WL6 A;  1Y1N A;  2Q95 A;  5JHU A;  4U6E A;  1JAW A;  4S01 A;  5CDV A;  3TAV A;  2GG7 A;  1C27 A;  4RGZ 1;  2GTX A;  1R58 A;  4QR8 A;  1QZY A;  3PKD A;  2BHC A;  2BHA A;  4Z7M A;  2EA4 A;  3IU9 A;  2V3Y A;  3CB6 A;  3PKC A;  5CLS A;  2OKN A;  2BHD A;  5JI6 A;  4FLJ A;  2ZSG A;  2P9A A;  5JFR A;  2GG9 A;  4IF7 A;  2BWU A;  3PKA A;  4U73 A;  4U76 A; 
#chains in the Genus database with same CATH homology
 4U71 A;  4PV4 A;  1R5H A;  2GU4 A;  2BWV A;  4EGE A;  5E2C A;  1C23 A;  3FM3 A;  4FLI A;  3OVK A;  2BH3 A;  3IU8 A;  3D27 A;  4A6V A;  4B28 A;  5E5B A;  4A6W A;  1YW9 A;  1XGO A;  4S2T P;  4U6W A;  2B3H A;  1WL9 A;  3IG4 A;  3MX6 A;  1B59 A;  3IU7 A;  4S00 A;  1CHM A;  2EA2 A;  2BB7 A;  2BWW A;  1KP0 A;  3BIT A;  4FKC A;  4U1B A;  4ZWU A;  4U6C A;  2Q93 A;  3BIQ A;  2Q96 A;  3FMQ A;  1KQ9 A;  3PEB A;  2GG5 A;  4RZY A;  1BOA A;  2GG3 A;  3PN9 A;  4IKT A;  1A16 A;  3S6B A;  3OOO A;  4S2R P;  3CB5 A;  1YW7 A;  1WY2 A;  4ZWO A;  5D6F A;  4RZZ A;  1YW8 A;  2BHB A;  3CTZ A;  2GU7 A;  2ADU A;  2Q94 A;  3FMR A;  2GG2 A;  3MAT A;  4IKS A;  5CDL A;  3I7M A;  5CE6 A;  1QXY A;  1MAT A;  2B3K A;  4IU6 A;  2GU6 A;  1M35 A;  4FUK A;  4JUQ A;  1WN1 A;  2Q92 A;  2OAZ A;  3ROR A;  2GA2 A;  4IEC A;  4U6Z A;  4U70 A;  5FCF A;  3Q6D A;  2BN7 A;  4FLK A;  2GZ5 A;  1WLR A;  2V6C A;  1C22 A;  1XGM A;  1XNZ A;  2P98 A;  2B3L A;  3RVA A;  2DFI A;  1XGS A;  2GGC A;  5CNX A;  2BWS A;  1C21 A;  4ZNG A;  3TB5 A;  1YVM A;  3MR1 A;  2BWY A;  4IDY A;  1KQ0 A;  4FO7 A;  2V3Z A;  1B6A A;  1PV9 A;  3IL0 A;  5CDE A;  2EVO A;  2P99 A;  4ZWP A;  5D6E A;  1YJ3 A;  2GG0 A;  1N51 A;  2BWX A;  1W7V A;  2Q8K A;  2GGB A;  5CIK A;  1BN5 A;  3L7G A;  2EVC A;  3PKB A;  5FCH A;  2BWT A;  4HXX A;  3BIP A;  3O5V A;  2NQ7 A;  4IKU A;  1WBQ A;  2NQ6 A;  3QOC A;  4MAT A;  4U69 A;  4U75 A;  3PKE A;  2IW2 A;  1XGN A;  4IKR A;  4FLL A;  1R5G A;  2HOW A;  4IPA A;  4R60 A;  1QXZ A;  4U6J A;  1C24 A;  1O0X A;  1WKM A;  1QXW A;  2GU5 A;  3L24 A;  2V3X A;  4OOK A;  2GG8 A;  2G6P A;  2EVM A;  4PNC A;  2MAT A;  4KM3 A;  1W2M A;  4FO8 A;  1WL6 A;  1Y1N A;  2Q95 A;  5JHU A;  4U6E A;  1JAW A;  4S01 A;  5CDV A;  3TAV A;  2GG7 A;  1C27 A;  4RGZ 1;  2GTX A;  1R58 A;  4QR8 A;  1QZY A;  3PKD A;  2BHC A;  2BHA A;  4Z7M A;  2EA4 A;  3IU9 A;  2V3Y A;  3CB6 A;  3PKC A;  5CLS A;  2OKN A;  2BHD A;  5JI6 A;  4FLJ A;  2ZSG A;  2P9A A;  5JFR A;  2GG9 A;  4IF7 A;  2BWU A;  3PKA A;  4U73 A;  4U76 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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