4R60A

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
397
structure length
397
Chain Sequence
b'TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
total genus 128
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2014-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4r60A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4r60A02
2GG3A 3PKAA 2ADUA 4IU6A 2GG7A 1KQ0A 2GU4A 1R58A 5CLSA 1M35A 4U70A 4OOKA 1C22A 3FMRA 3PKBA 3PEBA 1YVMA 4U6EA 4U75A 1YW7A 2OAZA 4FUKA 3IG4A 3FMQA 2B3LA 4HXXA 1C27A 1Y1NA 2BHBA 5D6EA 3PKCA 4U71A 1C23A 3OVKA 1PV9A 4EGEA 1QZYA 4RZZA 2Q8KA 2EVOA 3IU7A 4S01A 1BN5A 2Q95A 1YJ3A 2V6CA 3PKEA 2IW2A 4R60A 1WN1A 3D27A 3RVAA 2BWXA 3PKDA 1W7VA 4ZWOA 2OKNA 3Q6DA 4QR8A 4ZWPA 1R5HA 2Q96A 2BWSA 4IDYA 2EA4A 1WBQA 3MATA 4FLKA 4IKSA 2GG0A 2GU7A 2GG9A 2BWUA 1KQ9A 4A6WA 1QXWA 2NQ6A 5E5BA 1R5GA 4RZYA 5FCFA 5JHUA 3S6BA 1O0XA 2EVMA 3IL0A 1CHMA 2GGCA 4ZNGA 3RORA 2GU6A 3TAVA 2GU5A 1JAWA 1WL6A 2P9AA 4A6VA 2BHDA 1WKMA 2GA2A 4U69A 4U1BA 5JFRA 3OOOA 2BN7A 1B6AA 2GG2A 3BIQA 4IKUA 5CDLA 4FLIA 1XNZA 2V3YA 4ZWUA 1QXYA 2V3XA 4U6WA 2G6PA 2GZ5A 3PN9A 5CDVA 1XGSA 4U73A 1XGMA 2V3ZA 4PV4A 1C24A 2ZSGA 3QOCA 3L7GA 5D6FA 4MATA 3I7MA 1QXZA 3MR1A 4U6ZA 4U6CA 2HOWA 4U76A 4PNCA 2P99A 2BWVA 1WLRA 2DFIA 4KM3A 1YW9A 1WL9A 4JUQA 4S00A 4IPAA 5CDEA 3O5VA 2P98A 2Q92A 3CTZA 4FKCA 5CIKA 1KP0A 1XGOA 2BH3A 2BWWA 2EVCA 5FCHA 1WY2A 3IU9A 4IKTA 1N51A 3MX6A 2EA2A 3CB5A 1W2MA 1XGNA 1YW8A 4FO7A 4RGZ1 3BITA 4S2RP 2B3HA 2GG5A 4IKRA 2NQ7A 5E2CA 3TB5A 4S2TP 2B3KA 4U6JA 3CB6A 3L24A 2BHCA 3IU8A 5JI6A 1C21A 1A16A 3BIPA 1B59A 2GG8A 4FO8A 5CE6A 4Z7MA 2Q94A 5CNXA 2MATA 2BB7A 2GTXA 2BWTA 4IF7A 4B28A 4FLJA 2Q93A 2BHAA 1MATA 4FLLA 4IECA 3FM3A 1BOAA 2BWYA 2GGBA
chains in the Genus database with same CATH superfamily
2GG3A 3PKAA 2ADUA 4IU6A 2GG7A 1KQ0A 2GU4A 1R58A 5CLSA 1M35A 4U70A 4OOKA 1C22A 3FMRA 3PKBA 3PEBA 1YVMA 4U6EA 4U75A 1YW7A 2OAZA 4FUKA 3IG4A 3FMQA 2B3LA 4HXXA 1C27A 1Y1NA 2BHBA 5D6EA 3PKCA 4U71A 1C23A 3OVKA 1PV9A 4EGEA 1QZYA 4RZZA 2Q8KA 2EVOA 3IU7A 4S01A 1BN5A 2Q95A 1YJ3A 2V6CA 3PKEA 2IW2A 4R60A 1WN1A 3D27A 3RVAA 2BWXA 3PKDA 1W7VA 4ZWOA 2OKNA 3Q6DA 4QR8A 4ZWPA 1R5HA 2Q96A 2BWSA 4IDYA 2EA4A 1WBQA 3MATA 4FLKA 4IKSA 2GG0A 2GU7A 2GG9A 2BWUA 1KQ9A 4A6WA 1QXWA 2NQ6A 5E5BA 1R5GA 4RZYA 5FCFA 5JHUA 3S6BA 1O0XA 2EVMA 3IL0A 1CHMA 2GGCA 4ZNGA 3RORA 2GU6A 3TAVA 2GU5A 1JAWA 1WL6A 2P9AA 4A6VA 2BHDA 1WKMA 2GA2A 4U69A 4U1BA 5JFRA 3OOOA 2BN7A 1B6AA 2GG2A 3BIQA 4IKUA 5CDLA 4FLIA 1XNZA 2V3YA 4ZWUA 1QXYA 2V3XA 4U6WA 2G6PA 2GZ5A 3PN9A 5CDVA 1XGSA 4U73A 1XGMA 2V3ZA 4PV4A 1C24A 2ZSGA 3QOCA 3L7GA 5D6FA 4MATA 3I7MA 1QXZA 3MR1A 4U6ZA 4U6CA 2HOWA 4U76A 4PNCA 2P99A 2BWVA 1WLRA 2DFIA 4KM3A 1YW9A 1WL9A 4JUQA 4S00A 4IPAA 5CDEA 3O5VA 2P98A 2Q92A 3CTZA 4FKCA 5CIKA 1KP0A 1XGOA 2BH3A 2BWWA 2EVCA 5FCHA 1WY2A 3IU9A 4IKTA 1N51A 3MX6A 2EA2A 3CB5A 1W2MA 1XGNA 1YW8A 4FO7A 4RGZ1 3BITA 4S2RP 2B3HA 2GG5A 4IKRA 2NQ7A 5E2CA 3TB5A 4S2TP 2B3KA 4U6JA 3CB6A 3L24A 2BHCA 3IU8A 5JI6A 1C21A 1A16A 3BIPA 1B59A 2GG8A 4FO8A 5CE6A 4Z7MA 2Q94A 5CNXA 2MATA 2BB7A 2GTXA 2BWTA 4IF7A 4B28A 4FLJA 2Q93A 2BHAA 1MATA 4FLLA 4IECA 3FM3A 1BOAA 2BWYA 2GGBA
chains in the Genus database with same CATH topology
2GG3A 3PKAA 2ADUA 4IU6A 2GG7A 1KQ0A 2GU4A 1R58A 5CLSA 1M35A 4U70A 4OOKA 1C22A 3FMRA 3PKBA 3PEBA 1YVMA 4U6EA 4U75A 1YW7A 2OAZA 4FUKA 3IG4A 3FMQA 2B3LA 4HXXA 1C27A 1Y1NA 2BHBA 5D6EA 3PKCA 4U71A 1C23A 3OVKA 1PV9A 4EGEA 1QZYA 4RZZA 2Q8KA 2EVOA 3IU7A 4S01A 1BN5A 2Q95A 1YJ3A 2V6CA 3PKEA 2IW2A 4R60A 1WN1A 3D27A 3RVAA 2BWXA 3PKDA 1W7VA 4ZWOA 2OKNA 3Q6DA 4QR8A 4ZWPA 1R5HA 2Q96A 2BWSA 4IDYA 2EA4A 1WBQA 3MATA 4FLKA 4IKSA 2GG0A 2GU7A 2GG9A 2BWUA 1KQ9A 4A6WA 1QXWA 2NQ6A 5E5BA 1R5GA 4RZYA 5FCFA 5JHUA 3S6BA 1O0XA 2EVMA 3IL0A 1CHMA 2GGCA 4ZNGA 3RORA 2GU6A 3TAVA 2GU5A 1JAWA 1WL6A 2P9AA 4A6VA 2BHDA 1WKMA 2GA2A 4U69A 4U1BA 5JFRA 3OOOA 2BN7A 1B6AA 2GG2A 3BIQA 4IKUA 5CDLA 4FLIA 1XNZA 2V3YA 4ZWUA 1QXYA 2V3XA 4U6WA 2G6PA 2GZ5A 3PN9A 5CDVA 1XGSA 4U73A 1XGMA 2V3ZA 4PV4A 1C24A 2ZSGA 3QOCA 3L7GA 5D6FA 4MATA 3I7MA 1QXZA 3MR1A 4U6ZA 4U6CA 2HOWA 4U76A 4PNCA 2P99A 2BWVA 1WLRA 2DFIA 4KM3A 1YW9A 1WL9A 4JUQA 4S00A 4IPAA 5CDEA 3O5VA 2P98A 2Q92A 3CTZA 4FKCA 5CIKA 1KP0A 1XGOA 2BH3A 2BWWA 2EVCA 5FCHA 1WY2A 3IU9A 4IKTA 1N51A 3MX6A 2EA2A 3CB5A 1W2MA 1XGNA 1YW8A 4FO7A 4RGZ1 3BITA 4S2RP 2B3HA 2GG5A 4IKRA 2NQ7A 5E2CA 3TB5A 4S2TP 2B3KA 4U6JA 3CB6A 3L24A 2BHCA 3IU8A 5JI6A 1C21A 1A16A 3BIPA 1B59A 2GG8A 4FO8A 5CE6A 4Z7MA 2Q94A 5CNXA 2MATA 2BB7A 2GTXA 2BWTA 4IF7A 4B28A 4FLJA 2Q93A 2BHAA 1MATA 4FLLA 4IECA 3FM3A 1BOAA 2BWYA 2GGBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GG3 A;  3PKA A;  2ADU A;  4IU6 A;  2GG7 A;  1KQ0 A;  2GU4 A;  1R58 A;  5CLS A;  1M35 A;  4U70 A;  4OOK A;  1C22 A;  3FMR A;  3PKB A;  3PEB A;  1YVM A;  4U6E A;  4U75 A;  1YW7 A;  2OAZ A;  4FUK A;  3IG4 A;  3FMQ A;  2B3L A;  4HXX A;  1C27 A;  1Y1N A;  2BHB A;  5D6E A;  3PKC A;  4U71 A;  1C23 A;  3OVK A;  1PV9 A;  4EGE A;  1QZY A;  4RZZ A;  2Q8K A;  2EVO A;  3IU7 A;  4S01 A;  1BN5 A;  2Q95 A;  1YJ3 A;  2V6C A;  3PKE A;  2IW2 A;  4R60 A;  1WN1 A;  3D27 A;  3RVA A;  2BWX A;  3PKD A;  1W7V A;  4ZWO A;  2OKN A;  3Q6D A;  4QR8 A;  4ZWP A;  1R5H A;  2Q96 A;  2BWS A;  4IDY A;  2EA4 A;  1WBQ A;  3MAT A;  4FLK A;  4IKS A;  2GG0 A;  2GU7 A;  2GG9 A;  2BWU A;  1KQ9 A;  4A6W A;  1QXW A;  2NQ6 A;  5E5B A;  1R5G A;  4RZY A;  5FCF A;  5JHU A;  3S6B A;  1O0X A;  2EVM A;  3IL0 A;  1CHM A;  2GGC A;  4ZNG A;  3ROR A;  2GU6 A;  3TAV A;  2GU5 A;  1JAW A;  1WL6 A;  2P9A A;  4A6V A;  2BHD A;  1WKM A;  2GA2 A;  4U69 A;  4U1B A;  5JFR A;  3OOO A;  2BN7 A;  1B6A A;  2GG2 A;  3BIQ A;  4IKU A;  5CDL A;  4FLI A;  1XNZ A;  2V3Y A;  4ZWU A;  1QXY A;  2V3X A;  4U6W A;  2G6P A;  2GZ5 A;  3PN9 A;  5CDV A;  1XGS A;  4U73 A;  1XGM A;  2V3Z A;  4PV4 A;  1C24 A;  2ZSG A;  3QOC A;  3L7G A;  5D6F A;  4MAT A;  3I7M A;  1QXZ A;  3MR1 A;  4U6Z A;  4U6C A;  2HOW A;  4U76 A;  4PNC A;  2P99 A;  2BWV A;  1WLR A;  2DFI A;  4KM3 A;  1YW9 A;  1WL9 A;  4JUQ A;  4S00 A;  4IPA A;  5CDE A;  3O5V A;  2P98 A;  2Q92 A;  3CTZ A;  4FKC A;  5CIK A;  1KP0 A;  1XGO A;  2BH3 A;  2BWW A;  2EVC A;  5FCH A;  1WY2 A;  3IU9 A;  4IKT A;  1N51 A;  3MX6 A;  2EA2 A;  3CB5 A;  1W2M A;  1XGN A;  1YW8 A;  4FO7 A;  4RGZ 1;  3BIT A;  4S2R P;  2B3H A;  2GG5 A;  4IKR A;  2NQ7 A;  5E2C A;  3TB5 A;  4S2T P;  2B3K A;  4U6J A;  3CB6 A;  3L24 A;  2BHC A;  3IU8 A;  5JI6 A;  1C21 A;  1A16 A;  3BIP A;  1B59 A;  2GG8 A;  4FO8 A;  5CE6 A;  4Z7M A;  2Q94 A;  5CNX A;  2MAT A;  2BB7 A;  2GTX A;  2BWT A;  4IF7 A;  4B28 A;  4FLJ A;  2Q93 A;  2BHA A;  1MAT A;  4FLL A;  4IEC A;  3FM3 A;  1BOA A;  2BWY A;  2GGB A; 
#chains in the Genus database with same CATH topology
 2GG3 A;  3PKA A;  2ADU A;  4IU6 A;  2GG7 A;  1KQ0 A;  2GU4 A;  1R58 A;  5CLS A;  1M35 A;  4U70 A;  4OOK A;  1C22 A;  3FMR A;  3PKB A;  3PEB A;  1YVM A;  4U6E A;  4U75 A;  1YW7 A;  2OAZ A;  4FUK A;  3IG4 A;  3FMQ A;  2B3L A;  4HXX A;  1C27 A;  1Y1N A;  2BHB A;  5D6E A;  3PKC A;  4U71 A;  1C23 A;  3OVK A;  1PV9 A;  4EGE A;  1QZY A;  4RZZ A;  2Q8K A;  2EVO A;  3IU7 A;  4S01 A;  1BN5 A;  2Q95 A;  1YJ3 A;  2V6C A;  3PKE A;  2IW2 A;  4R60 A;  1WN1 A;  3D27 A;  3RVA A;  2BWX A;  3PKD A;  1W7V A;  4ZWO A;  2OKN A;  3Q6D A;  4QR8 A;  4ZWP A;  1R5H A;  2Q96 A;  2BWS A;  4IDY A;  2EA4 A;  1WBQ A;  3MAT A;  4FLK A;  4IKS A;  2GG0 A;  2GU7 A;  2GG9 A;  2BWU A;  1KQ9 A;  4A6W A;  1QXW A;  2NQ6 A;  5E5B A;  1R5G A;  4RZY A;  5FCF A;  5JHU A;  3S6B A;  1O0X A;  2EVM A;  3IL0 A;  1CHM A;  2GGC A;  4ZNG A;  3ROR A;  2GU6 A;  3TAV A;  2GU5 A;  1JAW A;  1WL6 A;  2P9A A;  4A6V A;  2BHD A;  1WKM A;  2GA2 A;  4U69 A;  4U1B A;  5JFR A;  3OOO A;  2BN7 A;  1B6A A;  2GG2 A;  3BIQ A;  4IKU A;  5CDL A;  4FLI A;  1XNZ A;  2V3Y A;  4ZWU A;  1QXY A;  2V3X A;  4U6W A;  2G6P A;  2GZ5 A;  3PN9 A;  5CDV A;  1XGS A;  4U73 A;  1XGM A;  2V3Z A;  4PV4 A;  1C24 A;  2ZSG A;  3QOC A;  3L7G A;  5D6F A;  4MAT A;  3I7M A;  1QXZ A;  3MR1 A;  4U6Z A;  4U6C A;  2HOW A;  4U76 A;  4PNC A;  2P99 A;  2BWV A;  1WLR A;  2DFI A;  4KM3 A;  1YW9 A;  1WL9 A;  4JUQ A;  4S00 A;  4IPA A;  5CDE A;  3O5V A;  2P98 A;  2Q92 A;  3CTZ A;  4FKC A;  5CIK A;  1KP0 A;  1XGO A;  2BH3 A;  2BWW A;  2EVC A;  5FCH A;  1WY2 A;  3IU9 A;  4IKT A;  1N51 A;  3MX6 A;  2EA2 A;  3CB5 A;  1W2M A;  1XGN A;  1YW8 A;  4FO7 A;  4RGZ 1;  3BIT A;  4S2R P;  2B3H A;  2GG5 A;  4IKR A;  2NQ7 A;  5E2C A;  3TB5 A;  4S2T P;  2B3K A;  4U6J A;  3CB6 A;  3L24 A;  2BHC A;  3IU8 A;  5JI6 A;  1C21 A;  1A16 A;  3BIP A;  1B59 A;  2GG8 A;  4FO8 A;  5CE6 A;  4Z7M A;  2Q94 A;  5CNX A;  2MAT A;  2BB7 A;  2GTX A;  2BWT A;  4IF7 A;  4B28 A;  4FLJ A;  2Q93 A;  2BHA A;  1MAT A;  4FLL A;  4IEC A;  3FM3 A;  1BOA A;  2BWY A;  2GGB A; 
#chains in the Genus database with same CATH homology
 2GG3 A;  3PKA A;  2ADU A;  4IU6 A;  2GG7 A;  1KQ0 A;  2GU4 A;  1R58 A;  5CLS A;  1M35 A;  4U70 A;  4OOK A;  1C22 A;  3FMR A;  3PKB A;  3PEB A;  1YVM A;  4U6E A;  4U75 A;  1YW7 A;  2OAZ A;  4FUK A;  3IG4 A;  3FMQ A;  2B3L A;  4HXX A;  1C27 A;  1Y1N A;  2BHB A;  5D6E A;  3PKC A;  4U71 A;  1C23 A;  3OVK A;  1PV9 A;  4EGE A;  1QZY A;  4RZZ A;  2Q8K A;  2EVO A;  3IU7 A;  4S01 A;  1BN5 A;  2Q95 A;  1YJ3 A;  2V6C A;  3PKE A;  2IW2 A;  4R60 A;  1WN1 A;  3D27 A;  3RVA A;  2BWX A;  3PKD A;  1W7V A;  4ZWO A;  2OKN A;  3Q6D A;  4QR8 A;  4ZWP A;  1R5H A;  2Q96 A;  2BWS A;  4IDY A;  2EA4 A;  1WBQ A;  3MAT A;  4FLK A;  4IKS A;  2GG0 A;  2GU7 A;  2GG9 A;  2BWU A;  1KQ9 A;  4A6W A;  1QXW A;  2NQ6 A;  5E5B A;  1R5G A;  4RZY A;  5FCF A;  5JHU A;  3S6B A;  1O0X A;  2EVM A;  3IL0 A;  1CHM A;  2GGC A;  4ZNG A;  3ROR A;  2GU6 A;  3TAV A;  2GU5 A;  1JAW A;  1WL6 A;  2P9A A;  4A6V A;  2BHD A;  1WKM A;  2GA2 A;  4U69 A;  4U1B A;  5JFR A;  3OOO A;  2BN7 A;  1B6A A;  2GG2 A;  3BIQ A;  4IKU A;  5CDL A;  4FLI A;  1XNZ A;  2V3Y A;  4ZWU A;  1QXY A;  2V3X A;  4U6W A;  2G6P A;  2GZ5 A;  3PN9 A;  5CDV A;  1XGS A;  4U73 A;  1XGM A;  2V3Z A;  4PV4 A;  1C24 A;  2ZSG A;  3QOC A;  3L7G A;  5D6F A;  4MAT A;  3I7M A;  1QXZ A;  3MR1 A;  4U6Z A;  4U6C A;  2HOW A;  4U76 A;  4PNC A;  2P99 A;  2BWV A;  1WLR A;  2DFI A;  4KM3 A;  1YW9 A;  1WL9 A;  4JUQ A;  4S00 A;  4IPA A;  5CDE A;  3O5V A;  2P98 A;  2Q92 A;  3CTZ A;  4FKC A;  5CIK A;  1KP0 A;  1XGO A;  2BH3 A;  2BWW A;  2EVC A;  5FCH A;  1WY2 A;  3IU9 A;  4IKT A;  1N51 A;  3MX6 A;  2EA2 A;  3CB5 A;  1W2M A;  1XGN A;  1YW8 A;  4FO7 A;  4RGZ 1;  3BIT A;  4S2R P;  2B3H A;  2GG5 A;  4IKR A;  2NQ7 A;  5E2C A;  3TB5 A;  4S2T P;  2B3K A;  4U6J A;  3CB6 A;  3L24 A;  2BHC A;  3IU8 A;  5JI6 A;  1C21 A;  1A16 A;  3BIP A;  1B59 A;  2GG8 A;  4FO8 A;  5CE6 A;  4Z7M A;  2Q94 A;  5CNX A;  2MAT A;  2BB7 A;  2GTX A;  2BWT A;  4IF7 A;  4B28 A;  4FLJ A;  2Q93 A;  2BHA A;  1MAT A;  4FLL A;  4IEC A;  3FM3 A;  1BOA A;  2BWY A;  2GGB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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