4R60A

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
total genus 128
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2014-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4r60A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4r60A02
3PKAA 1R5GA 4ZWOA 2GG8A 2OAZA 1C24A 1C21A 3D27A 1XGSA 2BHBA 1XNZA 1XGMA 4OOKA 1XGOA 2GA2A 2IW2A 3Q6DA 2MATA 4PV4A 4RGZ1 2BN7A 2HOWA 1WL9A 4QR8A 4IDYA 4HXXA 5D6EA 2BWVA 3BITA 1WKMA 1YW9A 2Q94A 3O5VA 5FCFA 4FLKA 1KP0A 2GU5A 2BH3A 3FMRA 4R60A 2B3KA 2V3XA 5CDEA 2Q95A 2P9AA 5CNXA 1C22A 2BWXA 4S2RP 4FLIA 1N51A 3IU9A 4U76A 5JFRA 4IF7A 2GGCA 1R58A 3MX6A 1QXYA 2DFIA 2BWUA 4FUKA 4U73A 3PKCA 3L7GA 4FO8A 2OKNA 4FO7A 1W7VA 2Q8KA 4IPAA 4FLJA 2B3HA 2NQ6A 4U6WA 4U6CA 3I7MA 4U6ZA 1B59A 1KQ9A 1BOAA 2G6PA 5CLSA 2BWSA 4U1BA 2BHDA 2Q92A 3BIQA 3PEBA 4MATA 1WLRA 2P98A 2GU6A 4PNCA 2BHCA 3TB5A 5FCHA 4IU6A 4S00A 4S2TP 5JI6A 1O0XA 1C23A 4ZWUA 3MATA 4U6EA 2GU4A 3IU7A 1QXWA 4FLLA 2EA2A 2GG7A 4KM3A 4U75A 4JUQA 2GG9A 1C27A 2EVCA 4ZWPA 4Z7MA 4A6WA 2EVOA 2BWYA 5E2CA 2GG5A 1WL6A 5CDVA 4RZZA 1CHMA 1YW8A 3S6BA 3BIPA 3IG4A 2P99A 1KQ0A 4FKCA 2BB7A 3L24A 2GU7A 3PKBA 1A16A 4U71A 1QZYA 1JAWA 4IKRA 4IKSA 3OVKA 3CB6A 3CTZA 1B6AA 5CIKA 1M35A 1YJ3A 1YW7A 2GG2A 3FM3A 4IKTA 2BWTA 2GZ5A 3MR1A 5D6FA 4EGEA 2GG0A 5CDLA 2EA4A 2BWWA 3FMQA 1WN1A 1XGNA 4U69A 1BN5A 3IL0A 5JHUA 1R5HA 1PV9A 3PKDA 4IECA 3QOCA 4A6VA 3CB5A 4RZYA 4S01A 2GTXA 3RORA 1W2MA 2Q96A 3PN9A 2NQ7A 1Y1NA 1QXZA 3TAVA 3OOOA 2V3YA 4ZNGA 5E5BA 3IU8A 1WBQA 5CE6A 2B3LA 2BHAA 2V6CA 4IKUA 1YVMA 2EVMA 2V3ZA 2ADUA 1WY2A 4U6JA 3PKEA 2GG3A 2GGBA 2Q93A 3RVAA 1MATA 4U70A 4B28A 2ZSGA
chains in the Genus database with same CATH superfamily
3PKAA 1R5GA 4ZWOA 2GG8A 2OAZA 1C24A 1C21A 3D27A 1XGSA 2BHBA 1XNZA 1XGMA 4OOKA 1XGOA 2GA2A 2IW2A 3Q6DA 2MATA 4PV4A 4RGZ1 2BN7A 2HOWA 1WL9A 4QR8A 4IDYA 4HXXA 5D6EA 2BWVA 3BITA 1WKMA 1YW9A 2Q94A 3O5VA 5FCFA 4FLKA 1KP0A 2GU5A 2BH3A 3FMRA 4R60A 2B3KA 2V3XA 5CDEA 2Q95A 2P9AA 5CNXA 1C22A 2BWXA 4S2RP 4FLIA 1N51A 3IU9A 4U76A 5JFRA 4IF7A 2GGCA 1R58A 3MX6A 1QXYA 2DFIA 2BWUA 4FUKA 4U73A 3PKCA 3L7GA 4FO8A 2OKNA 4FO7A 1W7VA 2Q8KA 4IPAA 4FLJA 2B3HA 2NQ6A 4U6WA 4U6CA 3I7MA 4U6ZA 1B59A 1KQ9A 1BOAA 2G6PA 5CLSA 2BWSA 4U1BA 2BHDA 2Q92A 3BIQA 3PEBA 4MATA 1WLRA 2P98A 2GU6A 4PNCA 2BHCA 3TB5A 5FCHA 4IU6A 4S00A 4S2TP 5JI6A 1O0XA 1C23A 4ZWUA 3MATA 4U6EA 2GU4A 3IU7A 1QXWA 4FLLA 2EA2A 2GG7A 4KM3A 4U75A 4JUQA 2GG9A 1C27A 2EVCA 4ZWPA 4Z7MA 4A6WA 2EVOA 2BWYA 5E2CA 2GG5A 1WL6A 5CDVA 4RZZA 1CHMA 1YW8A 3S6BA 3BIPA 3IG4A 2P99A 1KQ0A 4FKCA 2BB7A 3L24A 2GU7A 3PKBA 1A16A 4U71A 1QZYA 1JAWA 4IKRA 4IKSA 3OVKA 3CB6A 3CTZA 1B6AA 5CIKA 1M35A 1YJ3A 1YW7A 2GG2A 3FM3A 4IKTA 2BWTA 2GZ5A 3MR1A 5D6FA 4EGEA 2GG0A 5CDLA 2EA4A 2BWWA 3FMQA 1WN1A 1XGNA 4U69A 1BN5A 3IL0A 5JHUA 1R5HA 1PV9A 3PKDA 4IECA 3QOCA 4A6VA 3CB5A 4RZYA 4S01A 2GTXA 3RORA 1W2MA 2Q96A 3PN9A 2NQ7A 1Y1NA 1QXZA 3TAVA 3OOOA 2V3YA 4ZNGA 5E5BA 3IU8A 1WBQA 5CE6A 2B3LA 2BHAA 2V6CA 4IKUA 1YVMA 2EVMA 2V3ZA 2ADUA 1WY2A 4U6JA 3PKEA 2GG3A 2GGBA 2Q93A 3RVAA 1MATA 4U70A 4B28A 2ZSGA
chains in the Genus database with same CATH topology
3PKAA 1R5GA 4ZWOA 2GG8A 2OAZA 1C24A 1C21A 3D27A 1XGSA 2BHBA 1XNZA 1XGMA 4OOKA 1XGOA 2GA2A 2IW2A 3Q6DA 2MATA 4PV4A 4RGZ1 2BN7A 2HOWA 1WL9A 4QR8A 4IDYA 4HXXA 5D6EA 2BWVA 3BITA 1WKMA 1YW9A 2Q94A 3O5VA 5FCFA 4FLKA 1KP0A 2GU5A 2BH3A 3FMRA 4R60A 2B3KA 2V3XA 5CDEA 2Q95A 2P9AA 5CNXA 1C22A 2BWXA 4S2RP 4FLIA 1N51A 3IU9A 4U76A 5JFRA 4IF7A 2GGCA 1R58A 3MX6A 1QXYA 2DFIA 2BWUA 4FUKA 4U73A 3PKCA 3L7GA 4FO8A 2OKNA 4FO7A 1W7VA 2Q8KA 4IPAA 4FLJA 2B3HA 2NQ6A 4U6WA 4U6CA 3I7MA 4U6ZA 1B59A 1KQ9A 1BOAA 2G6PA 5CLSA 2BWSA 4U1BA 2BHDA 2Q92A 3BIQA 3PEBA 4MATA 1WLRA 2P98A 2GU6A 4PNCA 2BHCA 3TB5A 5FCHA 4IU6A 4S00A 4S2TP 5JI6A 1O0XA 1C23A 4ZWUA 3MATA 4U6EA 2GU4A 3IU7A 1QXWA 4FLLA 2EA2A 2GG7A 4KM3A 4U75A 4JUQA 2GG9A 1C27A 2EVCA 4ZWPA 4Z7MA 4A6WA 2EVOA 2BWYA 5E2CA 2GG5A 1WL6A 5CDVA 4RZZA 1CHMA 1YW8A 3S6BA 3BIPA 3IG4A 2P99A 1KQ0A 4FKCA 2BB7A 3L24A 2GU7A 3PKBA 1A16A 4U71A 1QZYA 1JAWA 4IKRA 4IKSA 3OVKA 3CB6A 3CTZA 1B6AA 5CIKA 1M35A 1YJ3A 1YW7A 2GG2A 3FM3A 4IKTA 2BWTA 2GZ5A 3MR1A 5D6FA 4EGEA 2GG0A 5CDLA 2EA4A 2BWWA 3FMQA 1WN1A 1XGNA 4U69A 1BN5A 3IL0A 5JHUA 1R5HA 1PV9A 3PKDA 4IECA 3QOCA 4A6VA 3CB5A 4RZYA 4S01A 2GTXA 3RORA 1W2MA 2Q96A 3PN9A 2NQ7A 1Y1NA 1QXZA 3TAVA 3OOOA 2V3YA 4ZNGA 5E5BA 3IU8A 1WBQA 5CE6A 2B3LA 2BHAA 2V6CA 4IKUA 1YVMA 2EVMA 2V3ZA 2ADUA 1WY2A 4U6JA 3PKEA 2GG3A 2GGBA 2Q93A 3RVAA 1MATA 4U70A 4B28A 2ZSGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PKA A;  1R5G A;  4ZWO A;  2GG8 A;  2OAZ A;  1C24 A;  1C21 A;  3D27 A;  1XGS A;  2BHB A;  1XNZ A;  1XGM A;  4OOK A;  1XGO A;  2GA2 A;  2IW2 A;  3Q6D A;  2MAT A;  4PV4 A;  4RGZ 1;  2BN7 A;  2HOW A;  1WL9 A;  4QR8 A;  4IDY A;  4HXX A;  5D6E A;  2BWV A;  3BIT A;  1WKM A;  1YW9 A;  2Q94 A;  3O5V A;  5FCF A;  4FLK A;  1KP0 A;  2GU5 A;  2BH3 A;  3FMR A;  4R60 A;  2B3K A;  2V3X A;  5CDE A;  2Q95 A;  2P9A A;  5CNX A;  1C22 A;  2BWX A;  4S2R P;  4FLI A;  1N51 A;  3IU9 A;  4U76 A;  5JFR A;  4IF7 A;  2GGC A;  1R58 A;  3MX6 A;  1QXY A;  2DFI A;  2BWU A;  4FUK A;  4U73 A;  3PKC A;  3L7G A;  4FO8 A;  2OKN A;  4FO7 A;  1W7V A;  2Q8K A;  4IPA A;  4FLJ A;  2B3H A;  2NQ6 A;  4U6W A;  4U6C A;  3I7M A;  4U6Z A;  1B59 A;  1KQ9 A;  1BOA A;  2G6P A;  5CLS A;  2BWS A;  4U1B A;  2BHD A;  2Q92 A;  3BIQ A;  3PEB A;  4MAT A;  1WLR A;  2P98 A;  2GU6 A;  4PNC A;  2BHC A;  3TB5 A;  5FCH A;  4IU6 A;  4S00 A;  4S2T P;  5JI6 A;  1O0X A;  1C23 A;  4ZWU A;  3MAT A;  4U6E A;  2GU4 A;  3IU7 A;  1QXW A;  4FLL A;  2EA2 A;  2GG7 A;  4KM3 A;  4U75 A;  4JUQ A;  2GG9 A;  1C27 A;  2EVC A;  4ZWP A;  4Z7M A;  4A6W A;  2EVO A;  2BWY A;  5E2C A;  2GG5 A;  1WL6 A;  5CDV A;  4RZZ A;  1CHM A;  1YW8 A;  3S6B A;  3BIP A;  3IG4 A;  2P99 A;  1KQ0 A;  4FKC A;  2BB7 A;  3L24 A;  2GU7 A;  3PKB A;  1A16 A;  4U71 A;  1QZY A;  1JAW A;  4IKR A;  4IKS A;  3OVK A;  3CB6 A;  3CTZ A;  1B6A A;  5CIK A;  1M35 A;  1YJ3 A;  1YW7 A;  2GG2 A;  3FM3 A;  4IKT A;  2BWT A;  2GZ5 A;  3MR1 A;  5D6F A;  4EGE A;  2GG0 A;  5CDL A;  2EA4 A;  2BWW A;  3FMQ A;  1WN1 A;  1XGN A;  4U69 A;  1BN5 A;  3IL0 A;  5JHU A;  1R5H A;  1PV9 A;  3PKD A;  4IEC A;  3QOC A;  4A6V A;  3CB5 A;  4RZY A;  4S01 A;  2GTX A;  3ROR A;  1W2M A;  2Q96 A;  3PN9 A;  2NQ7 A;  1Y1N A;  1QXZ A;  3TAV A;  3OOO A;  2V3Y A;  4ZNG A;  5E5B A;  3IU8 A;  1WBQ A;  5CE6 A;  2B3L A;  2BHA A;  2V6C A;  4IKU A;  1YVM A;  2EVM A;  2V3Z A;  2ADU A;  1WY2 A;  4U6J A;  3PKE A;  2GG3 A;  2GGB A;  2Q93 A;  3RVA A;  1MAT A;  4U70 A;  4B28 A;  2ZSG A; 
#chains in the Genus database with same CATH topology
 3PKA A;  1R5G A;  4ZWO A;  2GG8 A;  2OAZ A;  1C24 A;  1C21 A;  3D27 A;  1XGS A;  2BHB A;  1XNZ A;  1XGM A;  4OOK A;  1XGO A;  2GA2 A;  2IW2 A;  3Q6D A;  2MAT A;  4PV4 A;  4RGZ 1;  2BN7 A;  2HOW A;  1WL9 A;  4QR8 A;  4IDY A;  4HXX A;  5D6E A;  2BWV A;  3BIT A;  1WKM A;  1YW9 A;  2Q94 A;  3O5V A;  5FCF A;  4FLK A;  1KP0 A;  2GU5 A;  2BH3 A;  3FMR A;  4R60 A;  2B3K A;  2V3X A;  5CDE A;  2Q95 A;  2P9A A;  5CNX A;  1C22 A;  2BWX A;  4S2R P;  4FLI A;  1N51 A;  3IU9 A;  4U76 A;  5JFR A;  4IF7 A;  2GGC A;  1R58 A;  3MX6 A;  1QXY A;  2DFI A;  2BWU A;  4FUK A;  4U73 A;  3PKC A;  3L7G A;  4FO8 A;  2OKN A;  4FO7 A;  1W7V A;  2Q8K A;  4IPA A;  4FLJ A;  2B3H A;  2NQ6 A;  4U6W A;  4U6C A;  3I7M A;  4U6Z A;  1B59 A;  1KQ9 A;  1BOA A;  2G6P A;  5CLS A;  2BWS A;  4U1B A;  2BHD A;  2Q92 A;  3BIQ A;  3PEB A;  4MAT A;  1WLR A;  2P98 A;  2GU6 A;  4PNC A;  2BHC A;  3TB5 A;  5FCH A;  4IU6 A;  4S00 A;  4S2T P;  5JI6 A;  1O0X A;  1C23 A;  4ZWU A;  3MAT A;  4U6E A;  2GU4 A;  3IU7 A;  1QXW A;  4FLL A;  2EA2 A;  2GG7 A;  4KM3 A;  4U75 A;  4JUQ A;  2GG9 A;  1C27 A;  2EVC A;  4ZWP A;  4Z7M A;  4A6W A;  2EVO A;  2BWY A;  5E2C A;  2GG5 A;  1WL6 A;  5CDV A;  4RZZ A;  1CHM A;  1YW8 A;  3S6B A;  3BIP A;  3IG4 A;  2P99 A;  1KQ0 A;  4FKC A;  2BB7 A;  3L24 A;  2GU7 A;  3PKB A;  1A16 A;  4U71 A;  1QZY A;  1JAW A;  4IKR A;  4IKS A;  3OVK A;  3CB6 A;  3CTZ A;  1B6A A;  5CIK A;  1M35 A;  1YJ3 A;  1YW7 A;  2GG2 A;  3FM3 A;  4IKT A;  2BWT A;  2GZ5 A;  3MR1 A;  5D6F A;  4EGE A;  2GG0 A;  5CDL A;  2EA4 A;  2BWW A;  3FMQ A;  1WN1 A;  1XGN A;  4U69 A;  1BN5 A;  3IL0 A;  5JHU A;  1R5H A;  1PV9 A;  3PKD A;  4IEC A;  3QOC A;  4A6V A;  3CB5 A;  4RZY A;  4S01 A;  2GTX A;  3ROR A;  1W2M A;  2Q96 A;  3PN9 A;  2NQ7 A;  1Y1N A;  1QXZ A;  3TAV A;  3OOO A;  2V3Y A;  4ZNG A;  5E5B A;  3IU8 A;  1WBQ A;  5CE6 A;  2B3L A;  2BHA A;  2V6C A;  4IKU A;  1YVM A;  2EVM A;  2V3Z A;  2ADU A;  1WY2 A;  4U6J A;  3PKE A;  2GG3 A;  2GGB A;  2Q93 A;  3RVA A;  1MAT A;  4U70 A;  4B28 A;  2ZSG A; 
#chains in the Genus database with same CATH homology
 3PKA A;  1R5G A;  4ZWO A;  2GG8 A;  2OAZ A;  1C24 A;  1C21 A;  3D27 A;  1XGS A;  2BHB A;  1XNZ A;  1XGM A;  4OOK A;  1XGO A;  2GA2 A;  2IW2 A;  3Q6D A;  2MAT A;  4PV4 A;  4RGZ 1;  2BN7 A;  2HOW A;  1WL9 A;  4QR8 A;  4IDY A;  4HXX A;  5D6E A;  2BWV A;  3BIT A;  1WKM A;  1YW9 A;  2Q94 A;  3O5V A;  5FCF A;  4FLK A;  1KP0 A;  2GU5 A;  2BH3 A;  3FMR A;  4R60 A;  2B3K A;  2V3X A;  5CDE A;  2Q95 A;  2P9A A;  5CNX A;  1C22 A;  2BWX A;  4S2R P;  4FLI A;  1N51 A;  3IU9 A;  4U76 A;  5JFR A;  4IF7 A;  2GGC A;  1R58 A;  3MX6 A;  1QXY A;  2DFI A;  2BWU A;  4FUK A;  4U73 A;  3PKC A;  3L7G A;  4FO8 A;  2OKN A;  4FO7 A;  1W7V A;  2Q8K A;  4IPA A;  4FLJ A;  2B3H A;  2NQ6 A;  4U6W A;  4U6C A;  3I7M A;  4U6Z A;  1B59 A;  1KQ9 A;  1BOA A;  2G6P A;  5CLS A;  2BWS A;  4U1B A;  2BHD A;  2Q92 A;  3BIQ A;  3PEB A;  4MAT A;  1WLR A;  2P98 A;  2GU6 A;  4PNC A;  2BHC A;  3TB5 A;  5FCH A;  4IU6 A;  4S00 A;  4S2T P;  5JI6 A;  1O0X A;  1C23 A;  4ZWU A;  3MAT A;  4U6E A;  2GU4 A;  3IU7 A;  1QXW A;  4FLL A;  2EA2 A;  2GG7 A;  4KM3 A;  4U75 A;  4JUQ A;  2GG9 A;  1C27 A;  2EVC A;  4ZWP A;  4Z7M A;  4A6W A;  2EVO A;  2BWY A;  5E2C A;  2GG5 A;  1WL6 A;  5CDV A;  4RZZ A;  1CHM A;  1YW8 A;  3S6B A;  3BIP A;  3IG4 A;  2P99 A;  1KQ0 A;  4FKC A;  2BB7 A;  3L24 A;  2GU7 A;  3PKB A;  1A16 A;  4U71 A;  1QZY A;  1JAW A;  4IKR A;  4IKS A;  3OVK A;  3CB6 A;  3CTZ A;  1B6A A;  5CIK A;  1M35 A;  1YJ3 A;  1YW7 A;  2GG2 A;  3FM3 A;  4IKT A;  2BWT A;  2GZ5 A;  3MR1 A;  5D6F A;  4EGE A;  2GG0 A;  5CDL A;  2EA4 A;  2BWW A;  3FMQ A;  1WN1 A;  1XGN A;  4U69 A;  1BN5 A;  3IL0 A;  5JHU A;  1R5H A;  1PV9 A;  3PKD A;  4IEC A;  3QOC A;  4A6V A;  3CB5 A;  4RZY A;  4S01 A;  2GTX A;  3ROR A;  1W2M A;  2Q96 A;  3PN9 A;  2NQ7 A;  1Y1N A;  1QXZ A;  3TAV A;  3OOO A;  2V3Y A;  4ZNG A;  5E5B A;  3IU8 A;  1WBQ A;  5CE6 A;  2B3L A;  2BHA A;  2V6C A;  4IKU A;  1YVM A;  2EVM A;  2V3Z A;  2ADU A;  1WY2 A;  4U6J A;  3PKE A;  2GG3 A;  2GGB A;  2Q93 A;  3RVA A;  1MAT A;  4U70 A;  4B28 A;  2ZSG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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