4R60A

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 128
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2014-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4r60A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4r60A02
3I7MA 3RORA 3BIPA 4IF7A 4FLJA 2BWXA 3L7GA 3Q6DA 3S6BA 2BWUA 4ZWOA 3PKEA 1R5HA 2B3LA 2Q93A 4FKCA 2GGCA 5D6FA 1R5GA 1JAWA 5E2CA 1MATA 1B6AA 1WN1A 4U6ZA 4ZWPA 4U6CA 1WL6A 5CE6A 4A6VA 2BHCA 2BHAA 1WKMA 4IKSA 3PN9A 1C27A 4FO7A 4B28A 2Q92A 2GU4A 4U75A 2B3HA 1KQ0A 3PKCA 1XGSA 2OAZA 3MR1A 4FLIA 4IECA 2BHBA 5CDEA 1YW8A 4KM3A 4S01A 2P98A 1WLRA 3IU9A 4FLLA 4IU6A 3PKBA 4U6EA 4IKUA 2Q8KA 2DFIA 2NQ6A 3O5VA 1KP0A 3CTZA 3IL0A 4HXXA 4MATA 4ZNGA 2BWWA 5CNXA 4S2TP 2GG8A 4U73A 4PV4A 3FMQA 2GU5A 3CB5A 1YW9A 4FLKA 5E5BA 3PEBA 1YVMA 3PKAA 2HOWA 5CLSA 4IPAA 1Y1NA 2BWSA 2B3KA 2V6CA 2IW2A 3OVKA 1YJ3A 1PV9A 5CIKA 1XGMA 2EA4A 2EVCA 2OKNA 1XGNA 1XNZA 3FM3A 4FUKA 4ZWUA 3RVAA 2EVOA 2GG0A 4U6JA 2G6PA 2ZSGA 3OOOA 2GG3A 4FO8A 1BOAA 2BWVA 3MATA 1WL9A 1R58A 5JHUA 2EVMA 1XGOA 2EA2A 3FMRA 4IKRA 4U71A 5CDVA 3CB6A 2BN7A 4EGEA 4A6WA 1KQ9A 4U6WA 2BWTA 3BITA 1C24A 4IKTA 2GTXA 2NQ7A 2GA2A 2P99A 1QXZA 2GG2A 3D27A 4RZYA 2BB7A 4QR8A 4U1BA 2P9AA 2GG9A 4S2RP 2V3ZA 3QOCA 4IDYA 4JUQA 2Q95A 2ADUA 1M35A 5JI6A 2Q96A 3MX6A 3PKDA 3BIQA 3IG4A 1C21A 1BN5A 2GG7A 1O0XA 1QZYA 1B59A 4U70A 1N51A 5FCHA 2GG5A 3IU8A 1W7VA 2BHDA 2GGBA 2Q94A 1WY2A 5FCFA 1YW7A 3TAVA 2BH3A 1WBQA 4RZZA 4Z7MA 2GU6A 2BWYA 4OOKA 5D6EA 1C22A 1W2MA 2GU7A 2V3XA 4RGZ1 2V3YA 1CHMA 3IU7A 3L24A 4S00A 2GZ5A 1A16A 1QXWA 2MATA 4PNCA 5JFRA 1QXYA 5CDLA 4R60A 1C23A 4U76A 3TB5A 4U69A
chains in the Genus database with same CATH superfamily
3I7MA 3RORA 3BIPA 4IF7A 4FLJA 2BWXA 3L7GA 3Q6DA 3S6BA 2BWUA 4ZWOA 3PKEA 1R5HA 2B3LA 2Q93A 4FKCA 2GGCA 5D6FA 1R5GA 1JAWA 5E2CA 1MATA 1B6AA 1WN1A 4U6ZA 4ZWPA 4U6CA 1WL6A 5CE6A 4A6VA 2BHCA 2BHAA 1WKMA 4IKSA 3PN9A 1C27A 4FO7A 4B28A 2Q92A 2GU4A 4U75A 2B3HA 1KQ0A 3PKCA 1XGSA 2OAZA 3MR1A 4FLIA 4IECA 2BHBA 5CDEA 1YW8A 4KM3A 4S01A 2P98A 1WLRA 3IU9A 4FLLA 4IU6A 3PKBA 4U6EA 4IKUA 2Q8KA 2DFIA 2NQ6A 3O5VA 1KP0A 3CTZA 3IL0A 4HXXA 4MATA 4ZNGA 2BWWA 5CNXA 4S2TP 2GG8A 4U73A 4PV4A 3FMQA 2GU5A 3CB5A 1YW9A 4FLKA 5E5BA 3PEBA 1YVMA 3PKAA 2HOWA 5CLSA 4IPAA 1Y1NA 2BWSA 2B3KA 2V6CA 2IW2A 3OVKA 1YJ3A 1PV9A 5CIKA 1XGMA 2EA4A 2EVCA 2OKNA 1XGNA 1XNZA 3FM3A 4FUKA 4ZWUA 3RVAA 2EVOA 2GG0A 4U6JA 2G6PA 2ZSGA 3OOOA 2GG3A 4FO8A 1BOAA 2BWVA 3MATA 1WL9A 1R58A 5JHUA 2EVMA 1XGOA 2EA2A 3FMRA 4IKRA 4U71A 5CDVA 3CB6A 2BN7A 4EGEA 4A6WA 1KQ9A 4U6WA 2BWTA 3BITA 1C24A 4IKTA 2GTXA 2NQ7A 2GA2A 2P99A 1QXZA 2GG2A 3D27A 4RZYA 2BB7A 4QR8A 4U1BA 2P9AA 2GG9A 4S2RP 2V3ZA 3QOCA 4IDYA 4JUQA 2Q95A 2ADUA 1M35A 5JI6A 2Q96A 3MX6A 3PKDA 3BIQA 3IG4A 1C21A 1BN5A 2GG7A 1O0XA 1QZYA 1B59A 4U70A 1N51A 5FCHA 2GG5A 3IU8A 1W7VA 2BHDA 2GGBA 2Q94A 1WY2A 5FCFA 1YW7A 3TAVA 2BH3A 1WBQA 4RZZA 4Z7MA 2GU6A 2BWYA 4OOKA 5D6EA 1C22A 1W2MA 2GU7A 2V3XA 4RGZ1 2V3YA 1CHMA 3IU7A 3L24A 4S00A 2GZ5A 1A16A 1QXWA 2MATA 4PNCA 5JFRA 1QXYA 5CDLA 4R60A 1C23A 4U76A 3TB5A 4U69A
chains in the Genus database with same CATH topology
3I7MA 3RORA 3BIPA 4IF7A 4FLJA 2BWXA 3L7GA 3Q6DA 3S6BA 2BWUA 4ZWOA 3PKEA 1R5HA 2B3LA 2Q93A 4FKCA 2GGCA 5D6FA 1R5GA 1JAWA 5E2CA 1MATA 1B6AA 1WN1A 4U6ZA 4ZWPA 4U6CA 1WL6A 5CE6A 4A6VA 2BHCA 2BHAA 1WKMA 4IKSA 3PN9A 1C27A 4FO7A 4B28A 2Q92A 2GU4A 4U75A 2B3HA 1KQ0A 3PKCA 1XGSA 2OAZA 3MR1A 4FLIA 4IECA 2BHBA 5CDEA 1YW8A 4KM3A 4S01A 2P98A 1WLRA 3IU9A 4FLLA 4IU6A 3PKBA 4U6EA 4IKUA 2Q8KA 2DFIA 2NQ6A 3O5VA 1KP0A 3CTZA 3IL0A 4HXXA 4MATA 4ZNGA 2BWWA 5CNXA 4S2TP 2GG8A 4U73A 4PV4A 3FMQA 2GU5A 3CB5A 1YW9A 4FLKA 5E5BA 3PEBA 1YVMA 3PKAA 2HOWA 5CLSA 4IPAA 1Y1NA 2BWSA 2B3KA 2V6CA 2IW2A 3OVKA 1YJ3A 1PV9A 5CIKA 1XGMA 2EA4A 2EVCA 2OKNA 1XGNA 1XNZA 3FM3A 4FUKA 4ZWUA 3RVAA 2EVOA 2GG0A 4U6JA 2G6PA 2ZSGA 3OOOA 2GG3A 4FO8A 1BOAA 2BWVA 3MATA 1WL9A 1R58A 5JHUA 2EVMA 1XGOA 2EA2A 3FMRA 4IKRA 4U71A 5CDVA 3CB6A 2BN7A 4EGEA 4A6WA 1KQ9A 4U6WA 2BWTA 3BITA 1C24A 4IKTA 2GTXA 2NQ7A 2GA2A 2P99A 1QXZA 2GG2A 3D27A 4RZYA 2BB7A 4QR8A 4U1BA 2P9AA 2GG9A 4S2RP 2V3ZA 3QOCA 4IDYA 4JUQA 2Q95A 2ADUA 1M35A 5JI6A 2Q96A 3MX6A 3PKDA 3BIQA 3IG4A 1C21A 1BN5A 2GG7A 1O0XA 1QZYA 1B59A 4U70A 1N51A 5FCHA 2GG5A 3IU8A 1W7VA 2BHDA 2GGBA 2Q94A 1WY2A 5FCFA 1YW7A 3TAVA 2BH3A 1WBQA 4RZZA 4Z7MA 2GU6A 2BWYA 4OOKA 5D6EA 1C22A 1W2MA 2GU7A 2V3XA 4RGZ1 2V3YA 1CHMA 3IU7A 3L24A 4S00A 2GZ5A 1A16A 1QXWA 2MATA 4PNCA 5JFRA 1QXYA 5CDLA 4R60A 1C23A 4U76A 3TB5A 4U69A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I7M A;  3ROR A;  3BIP A;  4IF7 A;  4FLJ A;  2BWX A;  3L7G A;  3Q6D A;  3S6B A;  2BWU A;  4ZWO A;  3PKE A;  1R5H A;  2B3L A;  2Q93 A;  4FKC A;  2GGC A;  5D6F A;  1R5G A;  1JAW A;  5E2C A;  1MAT A;  1B6A A;  1WN1 A;  4U6Z A;  4ZWP A;  4U6C A;  1WL6 A;  5CE6 A;  4A6V A;  2BHC A;  2BHA A;  1WKM A;  4IKS A;  3PN9 A;  1C27 A;  4FO7 A;  4B28 A;  2Q92 A;  2GU4 A;  4U75 A;  2B3H A;  1KQ0 A;  3PKC A;  1XGS A;  2OAZ A;  3MR1 A;  4FLI A;  4IEC A;  2BHB A;  5CDE A;  1YW8 A;  4KM3 A;  4S01 A;  2P98 A;  1WLR A;  3IU9 A;  4FLL A;  4IU6 A;  3PKB A;  4U6E A;  4IKU A;  2Q8K A;  2DFI A;  2NQ6 A;  3O5V A;  1KP0 A;  3CTZ A;  3IL0 A;  4HXX A;  4MAT A;  4ZNG A;  2BWW A;  5CNX A;  4S2T P;  2GG8 A;  4U73 A;  4PV4 A;  3FMQ A;  2GU5 A;  3CB5 A;  1YW9 A;  4FLK A;  5E5B A;  3PEB A;  1YVM A;  3PKA A;  2HOW A;  5CLS A;  4IPA A;  1Y1N A;  2BWS A;  2B3K A;  2V6C A;  2IW2 A;  3OVK A;  1YJ3 A;  1PV9 A;  5CIK A;  1XGM A;  2EA4 A;  2EVC A;  2OKN A;  1XGN A;  1XNZ A;  3FM3 A;  4FUK A;  4ZWU A;  3RVA A;  2EVO A;  2GG0 A;  4U6J A;  2G6P A;  2ZSG A;  3OOO A;  2GG3 A;  4FO8 A;  1BOA A;  2BWV A;  3MAT A;  1WL9 A;  1R58 A;  5JHU A;  2EVM A;  1XGO A;  2EA2 A;  3FMR A;  4IKR A;  4U71 A;  5CDV A;  3CB6 A;  2BN7 A;  4EGE A;  4A6W A;  1KQ9 A;  4U6W A;  2BWT A;  3BIT A;  1C24 A;  4IKT A;  2GTX A;  2NQ7 A;  2GA2 A;  2P99 A;  1QXZ A;  2GG2 A;  3D27 A;  4RZY A;  2BB7 A;  4QR8 A;  4U1B A;  2P9A A;  2GG9 A;  4S2R P;  2V3Z A;  3QOC A;  4IDY A;  4JUQ A;  2Q95 A;  2ADU A;  1M35 A;  5JI6 A;  2Q96 A;  3MX6 A;  3PKD A;  3BIQ A;  3IG4 A;  1C21 A;  1BN5 A;  2GG7 A;  1O0X A;  1QZY A;  1B59 A;  4U70 A;  1N51 A;  5FCH A;  2GG5 A;  3IU8 A;  1W7V A;  2BHD A;  2GGB A;  2Q94 A;  1WY2 A;  5FCF A;  1YW7 A;  3TAV A;  2BH3 A;  1WBQ A;  4RZZ A;  4Z7M A;  2GU6 A;  2BWY A;  4OOK A;  5D6E A;  1C22 A;  1W2M A;  2GU7 A;  2V3X A;  4RGZ 1;  2V3Y A;  1CHM A;  3IU7 A;  3L24 A;  4S00 A;  2GZ5 A;  1A16 A;  1QXW A;  2MAT A;  4PNC A;  5JFR A;  1QXY A;  5CDL A;  4R60 A;  1C23 A;  4U76 A;  3TB5 A;  4U69 A; 
#chains in the Genus database with same CATH topology
 3I7M A;  3ROR A;  3BIP A;  4IF7 A;  4FLJ A;  2BWX A;  3L7G A;  3Q6D A;  3S6B A;  2BWU A;  4ZWO A;  3PKE A;  1R5H A;  2B3L A;  2Q93 A;  4FKC A;  2GGC A;  5D6F A;  1R5G A;  1JAW A;  5E2C A;  1MAT A;  1B6A A;  1WN1 A;  4U6Z A;  4ZWP A;  4U6C A;  1WL6 A;  5CE6 A;  4A6V A;  2BHC A;  2BHA A;  1WKM A;  4IKS A;  3PN9 A;  1C27 A;  4FO7 A;  4B28 A;  2Q92 A;  2GU4 A;  4U75 A;  2B3H A;  1KQ0 A;  3PKC A;  1XGS A;  2OAZ A;  3MR1 A;  4FLI A;  4IEC A;  2BHB A;  5CDE A;  1YW8 A;  4KM3 A;  4S01 A;  2P98 A;  1WLR A;  3IU9 A;  4FLL A;  4IU6 A;  3PKB A;  4U6E A;  4IKU A;  2Q8K A;  2DFI A;  2NQ6 A;  3O5V A;  1KP0 A;  3CTZ A;  3IL0 A;  4HXX A;  4MAT A;  4ZNG A;  2BWW A;  5CNX A;  4S2T P;  2GG8 A;  4U73 A;  4PV4 A;  3FMQ A;  2GU5 A;  3CB5 A;  1YW9 A;  4FLK A;  5E5B A;  3PEB A;  1YVM A;  3PKA A;  2HOW A;  5CLS A;  4IPA A;  1Y1N A;  2BWS A;  2B3K A;  2V6C A;  2IW2 A;  3OVK A;  1YJ3 A;  1PV9 A;  5CIK A;  1XGM A;  2EA4 A;  2EVC A;  2OKN A;  1XGN A;  1XNZ A;  3FM3 A;  4FUK A;  4ZWU A;  3RVA A;  2EVO A;  2GG0 A;  4U6J A;  2G6P A;  2ZSG A;  3OOO A;  2GG3 A;  4FO8 A;  1BOA A;  2BWV A;  3MAT A;  1WL9 A;  1R58 A;  5JHU A;  2EVM A;  1XGO A;  2EA2 A;  3FMR A;  4IKR A;  4U71 A;  5CDV A;  3CB6 A;  2BN7 A;  4EGE A;  4A6W A;  1KQ9 A;  4U6W A;  2BWT A;  3BIT A;  1C24 A;  4IKT A;  2GTX A;  2NQ7 A;  2GA2 A;  2P99 A;  1QXZ A;  2GG2 A;  3D27 A;  4RZY A;  2BB7 A;  4QR8 A;  4U1B A;  2P9A A;  2GG9 A;  4S2R P;  2V3Z A;  3QOC A;  4IDY A;  4JUQ A;  2Q95 A;  2ADU A;  1M35 A;  5JI6 A;  2Q96 A;  3MX6 A;  3PKD A;  3BIQ A;  3IG4 A;  1C21 A;  1BN5 A;  2GG7 A;  1O0X A;  1QZY A;  1B59 A;  4U70 A;  1N51 A;  5FCH A;  2GG5 A;  3IU8 A;  1W7V A;  2BHD A;  2GGB A;  2Q94 A;  1WY2 A;  5FCF A;  1YW7 A;  3TAV A;  2BH3 A;  1WBQ A;  4RZZ A;  4Z7M A;  2GU6 A;  2BWY A;  4OOK A;  5D6E A;  1C22 A;  1W2M A;  2GU7 A;  2V3X A;  4RGZ 1;  2V3Y A;  1CHM A;  3IU7 A;  3L24 A;  4S00 A;  2GZ5 A;  1A16 A;  1QXW A;  2MAT A;  4PNC A;  5JFR A;  1QXY A;  5CDL A;  4R60 A;  1C23 A;  4U76 A;  3TB5 A;  4U69 A; 
#chains in the Genus database with same CATH homology
 3I7M A;  3ROR A;  3BIP A;  4IF7 A;  4FLJ A;  2BWX A;  3L7G A;  3Q6D A;  3S6B A;  2BWU A;  4ZWO A;  3PKE A;  1R5H A;  2B3L A;  2Q93 A;  4FKC A;  2GGC A;  5D6F A;  1R5G A;  1JAW A;  5E2C A;  1MAT A;  1B6A A;  1WN1 A;  4U6Z A;  4ZWP A;  4U6C A;  1WL6 A;  5CE6 A;  4A6V A;  2BHC A;  2BHA A;  1WKM A;  4IKS A;  3PN9 A;  1C27 A;  4FO7 A;  4B28 A;  2Q92 A;  2GU4 A;  4U75 A;  2B3H A;  1KQ0 A;  3PKC A;  1XGS A;  2OAZ A;  3MR1 A;  4FLI A;  4IEC A;  2BHB A;  5CDE A;  1YW8 A;  4KM3 A;  4S01 A;  2P98 A;  1WLR A;  3IU9 A;  4FLL A;  4IU6 A;  3PKB A;  4U6E A;  4IKU A;  2Q8K A;  2DFI A;  2NQ6 A;  3O5V A;  1KP0 A;  3CTZ A;  3IL0 A;  4HXX A;  4MAT A;  4ZNG A;  2BWW A;  5CNX A;  4S2T P;  2GG8 A;  4U73 A;  4PV4 A;  3FMQ A;  2GU5 A;  3CB5 A;  1YW9 A;  4FLK A;  5E5B A;  3PEB A;  1YVM A;  3PKA A;  2HOW A;  5CLS A;  4IPA A;  1Y1N A;  2BWS A;  2B3K A;  2V6C A;  2IW2 A;  3OVK A;  1YJ3 A;  1PV9 A;  5CIK A;  1XGM A;  2EA4 A;  2EVC A;  2OKN A;  1XGN A;  1XNZ A;  3FM3 A;  4FUK A;  4ZWU A;  3RVA A;  2EVO A;  2GG0 A;  4U6J A;  2G6P A;  2ZSG A;  3OOO A;  2GG3 A;  4FO8 A;  1BOA A;  2BWV A;  3MAT A;  1WL9 A;  1R58 A;  5JHU A;  2EVM A;  1XGO A;  2EA2 A;  3FMR A;  4IKR A;  4U71 A;  5CDV A;  3CB6 A;  2BN7 A;  4EGE A;  4A6W A;  1KQ9 A;  4U6W A;  2BWT A;  3BIT A;  1C24 A;  4IKT A;  2GTX A;  2NQ7 A;  2GA2 A;  2P99 A;  1QXZ A;  2GG2 A;  3D27 A;  4RZY A;  2BB7 A;  4QR8 A;  4U1B A;  2P9A A;  2GG9 A;  4S2R P;  2V3Z A;  3QOC A;  4IDY A;  4JUQ A;  2Q95 A;  2ADU A;  1M35 A;  5JI6 A;  2Q96 A;  3MX6 A;  3PKD A;  3BIQ A;  3IG4 A;  1C21 A;  1BN5 A;  2GG7 A;  1O0X A;  1QZY A;  1B59 A;  4U70 A;  1N51 A;  5FCH A;  2GG5 A;  3IU8 A;  1W7V A;  2BHD A;  2GGB A;  2Q94 A;  1WY2 A;  5FCF A;  1YW7 A;  3TAV A;  2BH3 A;  1WBQ A;  4RZZ A;  4Z7M A;  2GU6 A;  2BWY A;  4OOK A;  5D6E A;  1C22 A;  1W2M A;  2GU7 A;  2V3X A;  4RGZ 1;  2V3Y A;  1CHM A;  3IU7 A;  3L24 A;  4S00 A;  2GZ5 A;  1A16 A;  1QXW A;  2MAT A;  4PNC A;  5JFR A;  1QXY A;  5CDL A;  4R60 A;  1C23 A;  4U76 A;  3TB5 A;  4U69 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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