2ZSGA

Crystal structure of x-pro aminopeptidase from thermotoga maritima msb8
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
359
structure length
356
Chain Sequence
MDRSERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGSFSIILISENTRLLITDSRYTVQAKQETDFEVREVDFIDVLKKTVNDLKIKTIALEEERVSLSLFRRISSAFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVAFDTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGIGLEVHEGPAISFRNDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKEQGCEILTTLPRSIFVV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aminopeptidase P, putative
publication title Crystal structure of X-Pro aminopeptidase from Thermotoga maritima MSB8
rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
total genus 124
structure length 356
sequence length 359
chains with identical sequence B
ec nomenclature ec 3.4.11.9: Xaa-Pro aminopeptidase.
pdb deposition date 2008-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 2zsgA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2zsgA02
2EVMA 4IKSA 2BHCA 2V3ZA 2Q96A 2BB7A 4S01A 4ZWPA 1BN5A 2BH3A 4U73A 2GGCA 4IECA 4U71A 2GG8A 5CDVA 3PKCA 4Z7MA 3CB6A 1C24A 4U6JA 4ZWOA 1WY2A 1C21A 3I7MA 4FO7A 3PN9A 2GU7A 3FM3A 5E5BA 3IU9A 5E2CA 1C22A 3IL0A 3IG4A 2BN7A 3BITA 1QXZA 4S2RP 3IU8A 3PKEA 4HXXA 1XGNA 2GG5A 3TB5A 5CIKA 1WL6A 2Q93A 2HOWA 2B3KA 3O5VA 3OOOA 5CDEA 1KQ0A 3Q6DA 1WBQA 2EVCA 2GZ5A 2GG3A 4OOKA 5JHUA 3PKBA 4KM3A 4IPAA 2GG7A 2OAZA 4RGZ1 2NQ7A 2P99A 1KP0A 1YJ3A 5CNXA 4FLLA 2BHBA 4QR8A 1C27A 4U76A 3FMQA 2Q8KA 3BIQA 2P98A 3MATA 1YW7A 4S00A 1JAWA 3RORA 4PV4A 1PV9A 4RZYA 1QXYA 2BWVA 2V3YA 2B3HA 4IDYA 4ZWUA 4R60A 5CDLA 1YVMA 2NQ6A 4IU6A 2IW2A 3RVAA 2GG0A 2GU4A 3QOCA 1XNZA 3L7GA 3TAVA 4U70A 3OVKA 2BWSA 1YW8A 4FLIA 4S2TP 4MATA 4PNCA 2V6CA 2BWYA 4IF7A 1CHMA 4FO8A 3D27A 2BWWA 3CB5A 1WLRA 2EA4A 2BWUA 2V3XA 5JI6A 4B28A 1M35A 1A16A 3FMRA 5CLSA 2BWXA 1QXWA 4A6VA 1W2MA 2BHDA 5JFRA 2G6PA 2Q95A 1XGSA 2P9AA 1XGOA 1BOAA 4RZZA 3BIPA 2DFIA 4U69A 1WL9A 1R58A 4EGEA 3S6BA 4ZNGA 1W7VA 4FUKA 5D6EA 1YW9A 4U1BA 2EA2A 1XGMA 2Q92A 3CTZA 1C23A 4FLKA 1QZYA 2ADUA 2GU6A 1WN1A 4U6ZA 3IU7A 3MR1A 2EVOA 1B6AA 1WKMA 1N51A 2Q94A 2OKNA 2BHAA 1KQ9A 5FCHA 1B59A 4IKTA 1Y1NA 1R5HA 2GA2A 2BWTA 4JUQA 2MATA 4U6CA 4IKUA 4U75A 5CE6A 3PKDA 3L24A 2B3LA 4FLJA 2GGBA 4IKRA 1O0XA 3PEBA 5D6FA 4U6WA 2ZSGA 3PKAA 2GG2A 5FCFA 2GU5A 3MX6A 1R5GA 1MATA 2GTXA 2GG9A 4A6WA 4U6EA 4FKCA
chains in the Genus database with same CATH superfamily
2EVMA 4IKSA 2BHCA 2V3ZA 2Q96A 2BB7A 4S01A 4ZWPA 1BN5A 2BH3A 4U73A 2GGCA 4IECA 4U71A 2GG8A 5CDVA 3PKCA 4Z7MA 3CB6A 1C24A 4U6JA 4ZWOA 1WY2A 1C21A 3I7MA 4FO7A 3PN9A 2GU7A 3FM3A 5E5BA 3IU9A 5E2CA 1C22A 3IL0A 3IG4A 2BN7A 3BITA 1QXZA 4S2RP 3IU8A 3PKEA 4HXXA 1XGNA 2GG5A 3TB5A 5CIKA 1WL6A 2Q93A 2HOWA 2B3KA 3O5VA 3OOOA 5CDEA 1KQ0A 3Q6DA 1WBQA 2EVCA 2GZ5A 2GG3A 4OOKA 5JHUA 3PKBA 4KM3A 4IPAA 2GG7A 2OAZA 4RGZ1 2NQ7A 2P99A 1KP0A 1YJ3A 5CNXA 4FLLA 2BHBA 4QR8A 1C27A 4U76A 3FMQA 2Q8KA 3BIQA 2P98A 3MATA 1YW7A 4S00A 1JAWA 3RORA 4PV4A 1PV9A 4RZYA 1QXYA 2BWVA 2V3YA 2B3HA 4IDYA 4ZWUA 4R60A 5CDLA 1YVMA 2NQ6A 4IU6A 2IW2A 3RVAA 2GG0A 2GU4A 3QOCA 1XNZA 3L7GA 3TAVA 4U70A 3OVKA 2BWSA 1YW8A 4FLIA 4S2TP 4MATA 4PNCA 2V6CA 2BWYA 4IF7A 1CHMA 4FO8A 3D27A 2BWWA 3CB5A 1WLRA 2EA4A 2BWUA 2V3XA 5JI6A 4B28A 1M35A 1A16A 3FMRA 5CLSA 2BWXA 1QXWA 4A6VA 1W2MA 2BHDA 5JFRA 2G6PA 2Q95A 1XGSA 2P9AA 1XGOA 1BOAA 4RZZA 3BIPA 2DFIA 4U69A 1WL9A 1R58A 4EGEA 3S6BA 4ZNGA 1W7VA 4FUKA 5D6EA 1YW9A 4U1BA 2EA2A 1XGMA 2Q92A 3CTZA 1C23A 4FLKA 1QZYA 2ADUA 2GU6A 1WN1A 4U6ZA 3IU7A 3MR1A 2EVOA 1B6AA 1WKMA 1N51A 2Q94A 2OKNA 2BHAA 1KQ9A 5FCHA 1B59A 4IKTA 1Y1NA 1R5HA 2GA2A 2BWTA 4JUQA 2MATA 4U6CA 4IKUA 4U75A 5CE6A 3PKDA 3L24A 2B3LA 4FLJA 2GGBA 4IKRA 1O0XA 3PEBA 5D6FA 4U6WA 2ZSGA 3PKAA 2GG2A 5FCFA 2GU5A 3MX6A 1R5GA 1MATA 2GTXA 2GG9A 4A6WA 4U6EA 4FKCA
chains in the Genus database with same CATH topology
2EVMA 4IKSA 2BHCA 2V3ZA 2Q96A 2BB7A 4S01A 4ZWPA 1BN5A 2BH3A 4U73A 2GGCA 4IECA 4U71A 2GG8A 5CDVA 3PKCA 4Z7MA 3CB6A 1C24A 4U6JA 4ZWOA 1WY2A 1C21A 3I7MA 4FO7A 3PN9A 2GU7A 3FM3A 5E5BA 3IU9A 5E2CA 1C22A 3IL0A 3IG4A 2BN7A 3BITA 1QXZA 4S2RP 3IU8A 3PKEA 4HXXA 1XGNA 2GG5A 3TB5A 5CIKA 1WL6A 2Q93A 2HOWA 2B3KA 3O5VA 3OOOA 5CDEA 1KQ0A 3Q6DA 1WBQA 2EVCA 2GZ5A 2GG3A 4OOKA 5JHUA 3PKBA 4KM3A 4IPAA 2GG7A 2OAZA 4RGZ1 2NQ7A 2P99A 1KP0A 1YJ3A 5CNXA 4FLLA 2BHBA 4QR8A 1C27A 4U76A 3FMQA 2Q8KA 3BIQA 2P98A 3MATA 1YW7A 4S00A 1JAWA 3RORA 4PV4A 1PV9A 4RZYA 1QXYA 2BWVA 2V3YA 2B3HA 4IDYA 4ZWUA 4R60A 5CDLA 1YVMA 2NQ6A 4IU6A 2IW2A 3RVAA 2GG0A 2GU4A 3QOCA 1XNZA 3L7GA 3TAVA 4U70A 3OVKA 2BWSA 1YW8A 4FLIA 4S2TP 4MATA 4PNCA 2V6CA 2BWYA 4IF7A 1CHMA 4FO8A 3D27A 2BWWA 3CB5A 1WLRA 2EA4A 2BWUA 2V3XA 5JI6A 4B28A 1M35A 1A16A 3FMRA 5CLSA 2BWXA 1QXWA 4A6VA 1W2MA 2BHDA 5JFRA 2G6PA 2Q95A 1XGSA 2P9AA 1XGOA 1BOAA 4RZZA 3BIPA 2DFIA 4U69A 1WL9A 1R58A 4EGEA 3S6BA 4ZNGA 1W7VA 4FUKA 5D6EA 1YW9A 4U1BA 2EA2A 1XGMA 2Q92A 3CTZA 1C23A 4FLKA 1QZYA 2ADUA 2GU6A 1WN1A 4U6ZA 3IU7A 3MR1A 2EVOA 1B6AA 1WKMA 1N51A 2Q94A 2OKNA 2BHAA 1KQ9A 5FCHA 1B59A 4IKTA 1Y1NA 1R5HA 2GA2A 2BWTA 4JUQA 2MATA 4U6CA 4IKUA 4U75A 5CE6A 3PKDA 3L24A 2B3LA 4FLJA 2GGBA 4IKRA 1O0XA 3PEBA 5D6FA 4U6WA 2ZSGA 3PKAA 2GG2A 5FCFA 2GU5A 3MX6A 1R5GA 1MATA 2GTXA 2GG9A 4A6WA 4U6EA 4FKCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EVM A;  4IKS A;  2BHC A;  2V3Z A;  2Q96 A;  2BB7 A;  4S01 A;  4ZWP A;  1BN5 A;  2BH3 A;  4U73 A;  2GGC A;  4IEC A;  4U71 A;  2GG8 A;  5CDV A;  3PKC A;  4Z7M A;  3CB6 A;  1C24 A;  4U6J A;  4ZWO A;  1WY2 A;  1C21 A;  3I7M A;  4FO7 A;  3PN9 A;  2GU7 A;  3FM3 A;  5E5B A;  3IU9 A;  5E2C A;  1C22 A;  3IL0 A;  3IG4 A;  2BN7 A;  3BIT A;  1QXZ A;  4S2R P;  3IU8 A;  3PKE A;  4HXX A;  1XGN A;  2GG5 A;  3TB5 A;  5CIK A;  1WL6 A;  2Q93 A;  2HOW A;  2B3K A;  3O5V A;  3OOO A;  5CDE A;  1KQ0 A;  3Q6D A;  1WBQ A;  2EVC A;  2GZ5 A;  2GG3 A;  4OOK A;  5JHU A;  3PKB A;  4KM3 A;  4IPA A;  2GG7 A;  2OAZ A;  4RGZ 1;  2NQ7 A;  2P99 A;  1KP0 A;  1YJ3 A;  5CNX A;  4FLL A;  2BHB A;  4QR8 A;  1C27 A;  4U76 A;  3FMQ A;  2Q8K A;  3BIQ A;  2P98 A;  3MAT A;  1YW7 A;  4S00 A;  1JAW A;  3ROR A;  4PV4 A;  1PV9 A;  4RZY A;  1QXY A;  2BWV A;  2V3Y A;  2B3H A;  4IDY A;  4ZWU A;  4R60 A;  5CDL A;  1YVM A;  2NQ6 A;  4IU6 A;  2IW2 A;  3RVA A;  2GG0 A;  2GU4 A;  3QOC A;  1XNZ A;  3L7G A;  3TAV A;  4U70 A;  3OVK A;  2BWS A;  1YW8 A;  4FLI A;  4S2T P;  4MAT A;  4PNC A;  2V6C A;  2BWY A;  4IF7 A;  1CHM A;  4FO8 A;  3D27 A;  2BWW A;  3CB5 A;  1WLR A;  2EA4 A;  2BWU A;  2V3X A;  5JI6 A;  4B28 A;  1M35 A;  1A16 A;  3FMR A;  5CLS A;  2BWX A;  1QXW A;  4A6V A;  1W2M A;  2BHD A;  5JFR A;  2G6P A;  2Q95 A;  1XGS A;  2P9A A;  1XGO A;  1BOA A;  4RZZ A;  3BIP A;  2DFI A;  4U69 A;  1WL9 A;  1R58 A;  4EGE A;  3S6B A;  4ZNG A;  1W7V A;  4FUK A;  5D6E A;  1YW9 A;  4U1B A;  2EA2 A;  1XGM A;  2Q92 A;  3CTZ A;  1C23 A;  4FLK A;  1QZY A;  2ADU A;  2GU6 A;  1WN1 A;  4U6Z A;  3IU7 A;  3MR1 A;  2EVO A;  1B6A A;  1WKM A;  1N51 A;  2Q94 A;  2OKN A;  2BHA A;  1KQ9 A;  5FCH A;  1B59 A;  4IKT A;  1Y1N A;  1R5H A;  2GA2 A;  2BWT A;  4JUQ A;  2MAT A;  4U6C A;  4IKU A;  4U75 A;  5CE6 A;  3PKD A;  3L24 A;  2B3L A;  4FLJ A;  2GGB A;  4IKR A;  1O0X A;  3PEB A;  5D6F A;  4U6W A;  2ZSG A;  3PKA A;  2GG2 A;  5FCF A;  2GU5 A;  3MX6 A;  1R5G A;  1MAT A;  2GTX A;  2GG9 A;  4A6W A;  4U6E A;  4FKC A; 
#chains in the Genus database with same CATH topology
 2EVM A;  4IKS A;  2BHC A;  2V3Z A;  2Q96 A;  2BB7 A;  4S01 A;  4ZWP A;  1BN5 A;  2BH3 A;  4U73 A;  2GGC A;  4IEC A;  4U71 A;  2GG8 A;  5CDV A;  3PKC A;  4Z7M A;  3CB6 A;  1C24 A;  4U6J A;  4ZWO A;  1WY2 A;  1C21 A;  3I7M A;  4FO7 A;  3PN9 A;  2GU7 A;  3FM3 A;  5E5B A;  3IU9 A;  5E2C A;  1C22 A;  3IL0 A;  3IG4 A;  2BN7 A;  3BIT A;  1QXZ A;  4S2R P;  3IU8 A;  3PKE A;  4HXX A;  1XGN A;  2GG5 A;  3TB5 A;  5CIK A;  1WL6 A;  2Q93 A;  2HOW A;  2B3K A;  3O5V A;  3OOO A;  5CDE A;  1KQ0 A;  3Q6D A;  1WBQ A;  2EVC A;  2GZ5 A;  2GG3 A;  4OOK A;  5JHU A;  3PKB A;  4KM3 A;  4IPA A;  2GG7 A;  2OAZ A;  4RGZ 1;  2NQ7 A;  2P99 A;  1KP0 A;  1YJ3 A;  5CNX A;  4FLL A;  2BHB A;  4QR8 A;  1C27 A;  4U76 A;  3FMQ A;  2Q8K A;  3BIQ A;  2P98 A;  3MAT A;  1YW7 A;  4S00 A;  1JAW A;  3ROR A;  4PV4 A;  1PV9 A;  4RZY A;  1QXY A;  2BWV A;  2V3Y A;  2B3H A;  4IDY A;  4ZWU A;  4R60 A;  5CDL A;  1YVM A;  2NQ6 A;  4IU6 A;  2IW2 A;  3RVA A;  2GG0 A;  2GU4 A;  3QOC A;  1XNZ A;  3L7G A;  3TAV A;  4U70 A;  3OVK A;  2BWS A;  1YW8 A;  4FLI A;  4S2T P;  4MAT A;  4PNC A;  2V6C A;  2BWY A;  4IF7 A;  1CHM A;  4FO8 A;  3D27 A;  2BWW A;  3CB5 A;  1WLR A;  2EA4 A;  2BWU A;  2V3X A;  5JI6 A;  4B28 A;  1M35 A;  1A16 A;  3FMR A;  5CLS A;  2BWX A;  1QXW A;  4A6V A;  1W2M A;  2BHD A;  5JFR A;  2G6P A;  2Q95 A;  1XGS A;  2P9A A;  1XGO A;  1BOA A;  4RZZ A;  3BIP A;  2DFI A;  4U69 A;  1WL9 A;  1R58 A;  4EGE A;  3S6B A;  4ZNG A;  1W7V A;  4FUK A;  5D6E A;  1YW9 A;  4U1B A;  2EA2 A;  1XGM A;  2Q92 A;  3CTZ A;  1C23 A;  4FLK A;  1QZY A;  2ADU A;  2GU6 A;  1WN1 A;  4U6Z A;  3IU7 A;  3MR1 A;  2EVO A;  1B6A A;  1WKM A;  1N51 A;  2Q94 A;  2OKN A;  2BHA A;  1KQ9 A;  5FCH A;  1B59 A;  4IKT A;  1Y1N A;  1R5H A;  2GA2 A;  2BWT A;  4JUQ A;  2MAT A;  4U6C A;  4IKU A;  4U75 A;  5CE6 A;  3PKD A;  3L24 A;  2B3L A;  4FLJ A;  2GGB A;  4IKR A;  1O0X A;  3PEB A;  5D6F A;  4U6W A;  2ZSG A;  3PKA A;  2GG2 A;  5FCF A;  2GU5 A;  3MX6 A;  1R5G A;  1MAT A;  2GTX A;  2GG9 A;  4A6W A;  4U6E A;  4FKC A; 
#chains in the Genus database with same CATH homology
 2EVM A;  4IKS A;  2BHC A;  2V3Z A;  2Q96 A;  2BB7 A;  4S01 A;  4ZWP A;  1BN5 A;  2BH3 A;  4U73 A;  2GGC A;  4IEC A;  4U71 A;  2GG8 A;  5CDV A;  3PKC A;  4Z7M A;  3CB6 A;  1C24 A;  4U6J A;  4ZWO A;  1WY2 A;  1C21 A;  3I7M A;  4FO7 A;  3PN9 A;  2GU7 A;  3FM3 A;  5E5B A;  3IU9 A;  5E2C A;  1C22 A;  3IL0 A;  3IG4 A;  2BN7 A;  3BIT A;  1QXZ A;  4S2R P;  3IU8 A;  3PKE A;  4HXX A;  1XGN A;  2GG5 A;  3TB5 A;  5CIK A;  1WL6 A;  2Q93 A;  2HOW A;  2B3K A;  3O5V A;  3OOO A;  5CDE A;  1KQ0 A;  3Q6D A;  1WBQ A;  2EVC A;  2GZ5 A;  2GG3 A;  4OOK A;  5JHU A;  3PKB A;  4KM3 A;  4IPA A;  2GG7 A;  2OAZ A;  4RGZ 1;  2NQ7 A;  2P99 A;  1KP0 A;  1YJ3 A;  5CNX A;  4FLL A;  2BHB A;  4QR8 A;  1C27 A;  4U76 A;  3FMQ A;  2Q8K A;  3BIQ A;  2P98 A;  3MAT A;  1YW7 A;  4S00 A;  1JAW A;  3ROR A;  4PV4 A;  1PV9 A;  4RZY A;  1QXY A;  2BWV A;  2V3Y A;  2B3H A;  4IDY A;  4ZWU A;  4R60 A;  5CDL A;  1YVM A;  2NQ6 A;  4IU6 A;  2IW2 A;  3RVA A;  2GG0 A;  2GU4 A;  3QOC A;  1XNZ A;  3L7G A;  3TAV A;  4U70 A;  3OVK A;  2BWS A;  1YW8 A;  4FLI A;  4S2T P;  4MAT A;  4PNC A;  2V6C A;  2BWY A;  4IF7 A;  1CHM A;  4FO8 A;  3D27 A;  2BWW A;  3CB5 A;  1WLR A;  2EA4 A;  2BWU A;  2V3X A;  5JI6 A;  4B28 A;  1M35 A;  1A16 A;  3FMR A;  5CLS A;  2BWX A;  1QXW A;  4A6V A;  1W2M A;  2BHD A;  5JFR A;  2G6P A;  2Q95 A;  1XGS A;  2P9A A;  1XGO A;  1BOA A;  4RZZ A;  3BIP A;  2DFI A;  4U69 A;  1WL9 A;  1R58 A;  4EGE A;  3S6B A;  4ZNG A;  1W7V A;  4FUK A;  5D6E A;  1YW9 A;  4U1B A;  2EA2 A;  1XGM A;  2Q92 A;  3CTZ A;  1C23 A;  4FLK A;  1QZY A;  2ADU A;  2GU6 A;  1WN1 A;  4U6Z A;  3IU7 A;  3MR1 A;  2EVO A;  1B6A A;  1WKM A;  1N51 A;  2Q94 A;  2OKN A;  2BHA A;  1KQ9 A;  5FCH A;  1B59 A;  4IKT A;  1Y1N A;  1R5H A;  2GA2 A;  2BWT A;  4JUQ A;  2MAT A;  4U6C A;  4IKU A;  4U75 A;  5CE6 A;  3PKD A;  3L24 A;  2B3L A;  4FLJ A;  2GGB A;  4IKR A;  1O0X A;  3PEB A;  5D6F A;  4U6W A;  2ZSG A;  3PKA A;  2GG2 A;  5FCF A;  2GU5 A;  3MX6 A;  1R5G A;  1MAT A;  2GTX A;  2GG9 A;  4A6W A;  4U6E A;  4FKC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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