4FKCA

Recombinant prolidase from thermococcus sibiricus
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
370
structure length
370
Chain Sequence
HHHGSMDYKRRIHKFQAHFGKKGFEGALVAPGSNFYYLTGFNPLGTLERLFVLILPSEGLLTAIAPRLYEKELEEFNGEVVLWSDSENPYKIFATKIKETFKEGEKLLIDDTMPVGVFLKAKDIFDKYSLHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFGADDVSFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLGIDVHEEPYISPGNKKILKDGMVFTIEPGIYLQGKFGVRIEDDVALVDKKGIRLTNADRELITL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Influence of intermolecular contacts on the structure of recombinant prolidase from Thermococcus sibiricus.
pubmed doi rcsb
source organism Thermococcus sibiricus
molecule tags Hydrolase
molecule keywords Xaa-Pro aminopeptidase
total genus 122
structure length 370
sequence length 370
ec nomenclature
pdb deposition date 2012-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4fkcA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fkcA02
1MATA 5CIKA 5CE6A 1YW9A 2GU4A 2ADUA 2GTXA 3CB6A 4QR8A 3PKBA 4JUQA 1BOAA 1R5GA 4U6CA 2B3KA 4IECA 3FMRA 1WBQA 3PKDA 2DFIA 2V3XA 1WL6A 4S2RP 4U71A 1C21A 1A16A 2Q93A 2ZSGA 4ZWOA 4FO8A 1W2MA 2EA2A 2BHAA 1WY2A 4B28A 5CDVA 1YJ3A 4U69A 4U76A 5D6EA 2Q8KA 3OVKA 3PKCA 3FMQA 2BWSA 1XGNA 4U6EA 4U6ZA 2BHCA 2BWUA 3MATA 3FM3A 1W7VA 1R5HA 2GG8A 4RZZA 1YW8A 1KP0A 2BWWA 1BN5A 3IG4A 4ZNGA 5FCHA 1WKMA 2EVOA 3IU7A 3BIQA 1JAWA 2B3HA 2V3ZA 4FLLA 3CTZA 1KQ0A 3BIPA 4S00A 4FLKA 2P9AA 2BHDA 3I7MA 4U1BA 3IL0A 3TB5A 2BWTA 1M35A 3CB5A 2NQ6A 1YW7A 3IU8A 4U6WA 3IU9A 2P99A 4ZWPA 4EGEA 1C23A 1XGMA 5CDLA 2BWXA 4FLIA 4IKUA 4U70A 1CHMA 2IW2A 2BN7A 2BH3A 5E5BA 1QZYA 3MX6A 4FUKA 5D6FA 1KQ9A 4PV4A 2NQ7A 5CDEA 4U6JA 2GU6A 2Q95A 4IPAA 4A6WA 3QOCA 4MATA 2V3YA 2G6PA 3Q6DA 4IKRA 2B3LA 3OOOA 4KM3A 4U73A 1Y1NA 2OAZA 2GG5A 2HOWA 3RVAA 2GG7A 4RGZ1 1XGOA 4S2TP 2GG9A 1C24A 1YVMA 4R60A 2GZ5A 2GA2A 4OOKA 3PKEA 4PNCA 4IU6A 4Z7MA 4HXXA 2MATA 4RZYA 2OKNA 3L24A 4A6VA 1N51A 2GG3A 3PN9A 3MR1A 5JI6A 2BHBA 2GGBA 2Q92A 2GGCA 5JFRA 1WLRA 2GG0A 4IDYA 4IF7A 2GG2A 4IKTA 2EVMA 2P98A 1PV9A 3S6BA 1QXZA 3D27A 4S01A 4FKCA 2Q96A 5JHUA 3RORA 3PEBA 3O5VA 2EA4A 4IKSA 4U75A 5CLSA 3TAVA 5CNXA 3PKAA 3L7GA 5E2CA 4ZWUA 1XGSA 1B6AA 2BB7A 1B59A 1O0XA 4FLJA 3BITA 2BWVA 2Q94A 4FO7A 2GU7A 1R58A 1C27A 1WL9A 1QXYA 1C22A 1XNZA 1WN1A 2BWYA 2GU5A 5FCFA 1QXWA 2EVCA 2V6CA
chains in the Genus database with same CATH superfamily
1MATA 5CIKA 5CE6A 1YW9A 2GU4A 2ADUA 2GTXA 3CB6A 4QR8A 3PKBA 4JUQA 1BOAA 1R5GA 4U6CA 2B3KA 4IECA 3FMRA 1WBQA 3PKDA 2DFIA 2V3XA 1WL6A 4S2RP 4U71A 1C21A 1A16A 2Q93A 2ZSGA 4ZWOA 4FO8A 1W2MA 2EA2A 2BHAA 1WY2A 4B28A 5CDVA 1YJ3A 4U69A 4U76A 5D6EA 2Q8KA 3OVKA 3PKCA 3FMQA 2BWSA 1XGNA 4U6EA 4U6ZA 2BHCA 2BWUA 3MATA 3FM3A 1W7VA 1R5HA 2GG8A 4RZZA 1YW8A 1KP0A 2BWWA 1BN5A 3IG4A 4ZNGA 5FCHA 1WKMA 2EVOA 3IU7A 3BIQA 1JAWA 2B3HA 2V3ZA 4FLLA 3CTZA 1KQ0A 3BIPA 4S00A 4FLKA 2P9AA 2BHDA 3I7MA 4U1BA 3IL0A 3TB5A 2BWTA 1M35A 3CB5A 2NQ6A 1YW7A 3IU8A 4U6WA 3IU9A 2P99A 4ZWPA 4EGEA 1C23A 1XGMA 5CDLA 2BWXA 4FLIA 4IKUA 4U70A 1CHMA 2IW2A 2BN7A 2BH3A 5E5BA 1QZYA 3MX6A 4FUKA 5D6FA 1KQ9A 4PV4A 2NQ7A 5CDEA 4U6JA 2GU6A 2Q95A 4IPAA 4A6WA 3QOCA 4MATA 2V3YA 2G6PA 3Q6DA 4IKRA 2B3LA 3OOOA 4KM3A 4U73A 1Y1NA 2OAZA 2GG5A 2HOWA 3RVAA 2GG7A 4RGZ1 1XGOA 4S2TP 2GG9A 1C24A 1YVMA 4R60A 2GZ5A 2GA2A 4OOKA 3PKEA 4PNCA 4IU6A 4Z7MA 4HXXA 2MATA 4RZYA 2OKNA 3L24A 4A6VA 1N51A 2GG3A 3PN9A 3MR1A 5JI6A 2BHBA 2GGBA 2Q92A 2GGCA 5JFRA 1WLRA 2GG0A 4IDYA 4IF7A 2GG2A 4IKTA 2EVMA 2P98A 1PV9A 3S6BA 1QXZA 3D27A 4S01A 4FKCA 2Q96A 5JHUA 3RORA 3PEBA 3O5VA 2EA4A 4IKSA 4U75A 5CLSA 3TAVA 5CNXA 3PKAA 3L7GA 5E2CA 4ZWUA 1XGSA 1B6AA 2BB7A 1B59A 1O0XA 4FLJA 3BITA 2BWVA 2Q94A 4FO7A 2GU7A 1R58A 1C27A 1WL9A 1QXYA 1C22A 1XNZA 1WN1A 2BWYA 2GU5A 5FCFA 1QXWA 2EVCA 2V6CA
chains in the Genus database with same CATH topology
1MATA 5CIKA 5CE6A 1YW9A 2GU4A 2ADUA 2GTXA 3CB6A 4QR8A 3PKBA 4JUQA 1BOAA 1R5GA 4U6CA 2B3KA 4IECA 3FMRA 1WBQA 3PKDA 2DFIA 2V3XA 1WL6A 4S2RP 4U71A 1C21A 1A16A 2Q93A 2ZSGA 4ZWOA 4FO8A 1W2MA 2EA2A 2BHAA 1WY2A 4B28A 5CDVA 1YJ3A 4U69A 4U76A 5D6EA 2Q8KA 3OVKA 3PKCA 3FMQA 2BWSA 1XGNA 4U6EA 4U6ZA 2BHCA 2BWUA 3MATA 3FM3A 1W7VA 1R5HA 2GG8A 4RZZA 1YW8A 1KP0A 2BWWA 1BN5A 3IG4A 4ZNGA 5FCHA 1WKMA 2EVOA 3IU7A 3BIQA 1JAWA 2B3HA 2V3ZA 4FLLA 3CTZA 1KQ0A 3BIPA 4S00A 4FLKA 2P9AA 2BHDA 3I7MA 4U1BA 3IL0A 3TB5A 2BWTA 1M35A 3CB5A 2NQ6A 1YW7A 3IU8A 4U6WA 3IU9A 2P99A 4ZWPA 4EGEA 1C23A 1XGMA 5CDLA 2BWXA 4FLIA 4IKUA 4U70A 1CHMA 2IW2A 2BN7A 2BH3A 5E5BA 1QZYA 3MX6A 4FUKA 5D6FA 1KQ9A 4PV4A 2NQ7A 5CDEA 4U6JA 2GU6A 2Q95A 4IPAA 4A6WA 3QOCA 4MATA 2V3YA 2G6PA 3Q6DA 4IKRA 2B3LA 3OOOA 4KM3A 4U73A 1Y1NA 2OAZA 2GG5A 2HOWA 3RVAA 2GG7A 4RGZ1 1XGOA 4S2TP 2GG9A 1C24A 1YVMA 4R60A 2GZ5A 2GA2A 4OOKA 3PKEA 4PNCA 4IU6A 4Z7MA 4HXXA 2MATA 4RZYA 2OKNA 3L24A 4A6VA 1N51A 2GG3A 3PN9A 3MR1A 5JI6A 2BHBA 2GGBA 2Q92A 2GGCA 5JFRA 1WLRA 2GG0A 4IDYA 4IF7A 2GG2A 4IKTA 2EVMA 2P98A 1PV9A 3S6BA 1QXZA 3D27A 4S01A 4FKCA 2Q96A 5JHUA 3RORA 3PEBA 3O5VA 2EA4A 4IKSA 4U75A 5CLSA 3TAVA 5CNXA 3PKAA 3L7GA 5E2CA 4ZWUA 1XGSA 1B6AA 2BB7A 1B59A 1O0XA 4FLJA 3BITA 2BWVA 2Q94A 4FO7A 2GU7A 1R58A 1C27A 1WL9A 1QXYA 1C22A 1XNZA 1WN1A 2BWYA 2GU5A 5FCFA 1QXWA 2EVCA 2V6CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MAT A;  5CIK A;  5CE6 A;  1YW9 A;  2GU4 A;  2ADU A;  2GTX A;  3CB6 A;  4QR8 A;  3PKB A;  4JUQ A;  1BOA A;  1R5G A;  4U6C A;  2B3K A;  4IEC A;  3FMR A;  1WBQ A;  3PKD A;  2DFI A;  2V3X A;  1WL6 A;  4S2R P;  4U71 A;  1C21 A;  1A16 A;  2Q93 A;  2ZSG A;  4ZWO A;  4FO8 A;  1W2M A;  2EA2 A;  2BHA A;  1WY2 A;  4B28 A;  5CDV A;  1YJ3 A;  4U69 A;  4U76 A;  5D6E A;  2Q8K A;  3OVK A;  3PKC A;  3FMQ A;  2BWS A;  1XGN A;  4U6E A;  4U6Z A;  2BHC A;  2BWU A;  3MAT A;  3FM3 A;  1W7V A;  1R5H A;  2GG8 A;  4RZZ A;  1YW8 A;  1KP0 A;  2BWW A;  1BN5 A;  3IG4 A;  4ZNG A;  5FCH A;  1WKM A;  2EVO A;  3IU7 A;  3BIQ A;  1JAW A;  2B3H A;  2V3Z A;  4FLL A;  3CTZ A;  1KQ0 A;  3BIP A;  4S00 A;  4FLK A;  2P9A A;  2BHD A;  3I7M A;  4U1B A;  3IL0 A;  3TB5 A;  2BWT A;  1M35 A;  3CB5 A;  2NQ6 A;  1YW7 A;  3IU8 A;  4U6W A;  3IU9 A;  2P99 A;  4ZWP A;  4EGE A;  1C23 A;  1XGM A;  5CDL A;  2BWX A;  4FLI A;  4IKU A;  4U70 A;  1CHM A;  2IW2 A;  2BN7 A;  2BH3 A;  5E5B A;  1QZY A;  3MX6 A;  4FUK A;  5D6F A;  1KQ9 A;  4PV4 A;  2NQ7 A;  5CDE A;  4U6J A;  2GU6 A;  2Q95 A;  4IPA A;  4A6W A;  3QOC A;  4MAT A;  2V3Y A;  2G6P A;  3Q6D A;  4IKR A;  2B3L A;  3OOO A;  4KM3 A;  4U73 A;  1Y1N A;  2OAZ A;  2GG5 A;  2HOW A;  3RVA A;  2GG7 A;  4RGZ 1;  1XGO A;  4S2T P;  2GG9 A;  1C24 A;  1YVM A;  4R60 A;  2GZ5 A;  2GA2 A;  4OOK A;  3PKE A;  4PNC A;  4IU6 A;  4Z7M A;  4HXX A;  2MAT A;  4RZY A;  2OKN A;  3L24 A;  4A6V A;  1N51 A;  2GG3 A;  3PN9 A;  3MR1 A;  5JI6 A;  2BHB A;  2GGB A;  2Q92 A;  2GGC A;  5JFR A;  1WLR A;  2GG0 A;  4IDY A;  4IF7 A;  2GG2 A;  4IKT A;  2EVM A;  2P98 A;  1PV9 A;  3S6B A;  1QXZ A;  3D27 A;  4S01 A;  4FKC A;  2Q96 A;  5JHU A;  3ROR A;  3PEB A;  3O5V A;  2EA4 A;  4IKS A;  4U75 A;  5CLS A;  3TAV A;  5CNX A;  3PKA A;  3L7G A;  5E2C A;  4ZWU A;  1XGS A;  1B6A A;  2BB7 A;  1B59 A;  1O0X A;  4FLJ A;  3BIT A;  2BWV A;  2Q94 A;  4FO7 A;  2GU7 A;  1R58 A;  1C27 A;  1WL9 A;  1QXY A;  1C22 A;  1XNZ A;  1WN1 A;  2BWY A;  2GU5 A;  5FCF A;  1QXW A;  2EVC A;  2V6C A; 
#chains in the Genus database with same CATH topology
 1MAT A;  5CIK A;  5CE6 A;  1YW9 A;  2GU4 A;  2ADU A;  2GTX A;  3CB6 A;  4QR8 A;  3PKB A;  4JUQ A;  1BOA A;  1R5G A;  4U6C A;  2B3K A;  4IEC A;  3FMR A;  1WBQ A;  3PKD A;  2DFI A;  2V3X A;  1WL6 A;  4S2R P;  4U71 A;  1C21 A;  1A16 A;  2Q93 A;  2ZSG A;  4ZWO A;  4FO8 A;  1W2M A;  2EA2 A;  2BHA A;  1WY2 A;  4B28 A;  5CDV A;  1YJ3 A;  4U69 A;  4U76 A;  5D6E A;  2Q8K A;  3OVK A;  3PKC A;  3FMQ A;  2BWS A;  1XGN A;  4U6E A;  4U6Z A;  2BHC A;  2BWU A;  3MAT A;  3FM3 A;  1W7V A;  1R5H A;  2GG8 A;  4RZZ A;  1YW8 A;  1KP0 A;  2BWW A;  1BN5 A;  3IG4 A;  4ZNG A;  5FCH A;  1WKM A;  2EVO A;  3IU7 A;  3BIQ A;  1JAW A;  2B3H A;  2V3Z A;  4FLL A;  3CTZ A;  1KQ0 A;  3BIP A;  4S00 A;  4FLK A;  2P9A A;  2BHD A;  3I7M A;  4U1B A;  3IL0 A;  3TB5 A;  2BWT A;  1M35 A;  3CB5 A;  2NQ6 A;  1YW7 A;  3IU8 A;  4U6W A;  3IU9 A;  2P99 A;  4ZWP A;  4EGE A;  1C23 A;  1XGM A;  5CDL A;  2BWX A;  4FLI A;  4IKU A;  4U70 A;  1CHM A;  2IW2 A;  2BN7 A;  2BH3 A;  5E5B A;  1QZY A;  3MX6 A;  4FUK A;  5D6F A;  1KQ9 A;  4PV4 A;  2NQ7 A;  5CDE A;  4U6J A;  2GU6 A;  2Q95 A;  4IPA A;  4A6W A;  3QOC A;  4MAT A;  2V3Y A;  2G6P A;  3Q6D A;  4IKR A;  2B3L A;  3OOO A;  4KM3 A;  4U73 A;  1Y1N A;  2OAZ A;  2GG5 A;  2HOW A;  3RVA A;  2GG7 A;  4RGZ 1;  1XGO A;  4S2T P;  2GG9 A;  1C24 A;  1YVM A;  4R60 A;  2GZ5 A;  2GA2 A;  4OOK A;  3PKE A;  4PNC A;  4IU6 A;  4Z7M A;  4HXX A;  2MAT A;  4RZY A;  2OKN A;  3L24 A;  4A6V A;  1N51 A;  2GG3 A;  3PN9 A;  3MR1 A;  5JI6 A;  2BHB A;  2GGB A;  2Q92 A;  2GGC A;  5JFR A;  1WLR A;  2GG0 A;  4IDY A;  4IF7 A;  2GG2 A;  4IKT A;  2EVM A;  2P98 A;  1PV9 A;  3S6B A;  1QXZ A;  3D27 A;  4S01 A;  4FKC A;  2Q96 A;  5JHU A;  3ROR A;  3PEB A;  3O5V A;  2EA4 A;  4IKS A;  4U75 A;  5CLS A;  3TAV A;  5CNX A;  3PKA A;  3L7G A;  5E2C A;  4ZWU A;  1XGS A;  1B6A A;  2BB7 A;  1B59 A;  1O0X A;  4FLJ A;  3BIT A;  2BWV A;  2Q94 A;  4FO7 A;  2GU7 A;  1R58 A;  1C27 A;  1WL9 A;  1QXY A;  1C22 A;  1XNZ A;  1WN1 A;  2BWY A;  2GU5 A;  5FCF A;  1QXW A;  2EVC A;  2V6C A; 
#chains in the Genus database with same CATH homology
 1MAT A;  5CIK A;  5CE6 A;  1YW9 A;  2GU4 A;  2ADU A;  2GTX A;  3CB6 A;  4QR8 A;  3PKB A;  4JUQ A;  1BOA A;  1R5G A;  4U6C A;  2B3K A;  4IEC A;  3FMR A;  1WBQ A;  3PKD A;  2DFI A;  2V3X A;  1WL6 A;  4S2R P;  4U71 A;  1C21 A;  1A16 A;  2Q93 A;  2ZSG A;  4ZWO A;  4FO8 A;  1W2M A;  2EA2 A;  2BHA A;  1WY2 A;  4B28 A;  5CDV A;  1YJ3 A;  4U69 A;  4U76 A;  5D6E A;  2Q8K A;  3OVK A;  3PKC A;  3FMQ A;  2BWS A;  1XGN A;  4U6E A;  4U6Z A;  2BHC A;  2BWU A;  3MAT A;  3FM3 A;  1W7V A;  1R5H A;  2GG8 A;  4RZZ A;  1YW8 A;  1KP0 A;  2BWW A;  1BN5 A;  3IG4 A;  4ZNG A;  5FCH A;  1WKM A;  2EVO A;  3IU7 A;  3BIQ A;  1JAW A;  2B3H A;  2V3Z A;  4FLL A;  3CTZ A;  1KQ0 A;  3BIP A;  4S00 A;  4FLK A;  2P9A A;  2BHD A;  3I7M A;  4U1B A;  3IL0 A;  3TB5 A;  2BWT A;  1M35 A;  3CB5 A;  2NQ6 A;  1YW7 A;  3IU8 A;  4U6W A;  3IU9 A;  2P99 A;  4ZWP A;  4EGE A;  1C23 A;  1XGM A;  5CDL A;  2BWX A;  4FLI A;  4IKU A;  4U70 A;  1CHM A;  2IW2 A;  2BN7 A;  2BH3 A;  5E5B A;  1QZY A;  3MX6 A;  4FUK A;  5D6F A;  1KQ9 A;  4PV4 A;  2NQ7 A;  5CDE A;  4U6J A;  2GU6 A;  2Q95 A;  4IPA A;  4A6W A;  3QOC A;  4MAT A;  2V3Y A;  2G6P A;  3Q6D A;  4IKR A;  2B3L A;  3OOO A;  4KM3 A;  4U73 A;  1Y1N A;  2OAZ A;  2GG5 A;  2HOW A;  3RVA A;  2GG7 A;  4RGZ 1;  1XGO A;  4S2T P;  2GG9 A;  1C24 A;  1YVM A;  4R60 A;  2GZ5 A;  2GA2 A;  4OOK A;  3PKE A;  4PNC A;  4IU6 A;  4Z7M A;  4HXX A;  2MAT A;  4RZY A;  2OKN A;  3L24 A;  4A6V A;  1N51 A;  2GG3 A;  3PN9 A;  3MR1 A;  5JI6 A;  2BHB A;  2GGB A;  2Q92 A;  2GGC A;  5JFR A;  1WLR A;  2GG0 A;  4IDY A;  4IF7 A;  2GG2 A;  4IKT A;  2EVM A;  2P98 A;  1PV9 A;  3S6B A;  1QXZ A;  3D27 A;  4S01 A;  4FKC A;  2Q96 A;  5JHU A;  3ROR A;  3PEB A;  3O5V A;  2EA4 A;  4IKS A;  4U75 A;  5CLS A;  3TAV A;  5CNX A;  3PKA A;  3L7G A;  5E2C A;  4ZWU A;  1XGS A;  1B6A A;  2BB7 A;  1B59 A;  1O0X A;  4FLJ A;  3BIT A;  2BWV A;  2Q94 A;  4FO7 A;  2GU7 A;  1R58 A;  1C27 A;  1WL9 A;  1QXY A;  1C22 A;  1XNZ A;  1WN1 A;  2BWY A;  2GU5 A;  5FCF A;  1QXW A;  2EVC A;  2V6C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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