5CNXA

Crystal structure of xaa-pro aminopeptidase from escherichia coli k12
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
360
structure length
360
Chain Sequence
STLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aminopeptidase YpdF
publication title Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 121
structure length 360
sequence length 360
chains with identical sequence B, C
ec nomenclature ec 3.4.11.-:
pdb deposition date 2015-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cnxA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cnxA02
3IG4A 5D6EA 1R58A 1WLRA 1Y1NA 2BHCA 2Q8KA 2B3LA 3RVAA 5E5BA 1QXWA 4S2TP 2EVOA 1R5HA 3L24A 4U73A 1PV9A 4IECA 4IKUA 1N51A 1CHMA 2BWYA 3BIPA 1QXYA 1B59A 2EVCA 4FLJA 3TB5A 2Q96A 4Z7MA 4U71A 1KQ9A 2GU5A 1WN1A 5CDVA 3IL0A 2GZ5A 4KM3A 1O0XA 1YW8A 3CB5A 4RZZA 3IU9A 3IU7A 5JFRA 5CLSA 4U6CA 3S6BA 2GG7A 1B6AA 4U70A 2BN7A 4A6VA 2BWWA 2DFIA 2GA2A 4S2RP 2BWVA 2GTXA 2OAZA 4U6EA 3PN9A 2GG0A 2NQ6A 3QOCA 2BWXA 4RZYA 1XGNA 4U1BA 3L7GA 2BH3A 2GGBA 4QR8A 2IW2A 1C21A 4PNCA 1BN5A 1KP0A 2BWTA 1YVMA 4U69A 2ADUA 3MATA 3MR1A 2GG8A 1WL9A 5FCHA 3Q6DA 2GU4A 5CE6A 1M35A 5CDEA 3PKBA 1W7VA 1QZYA 2MATA 4IU6A 2Q94A 1WBQA 4FLLA 4U6WA 2EA4A 4IKSA 1C22A 3FMQA 4U75A 2BHAA 2V3ZA 3CB6A 2HOWA 2P99A 3RORA 4B28A 1BOAA 2G6PA 4FLKA 4FKCA 4RGZ1 2BWUA 1C24A 2EA2A 2OKNA 4JUQA 4ZWUA 4FLIA 4IPAA 3PKDA 2BWSA 3PKEA 4HXXA 5CNXA 2BHDA 1XGSA 2BB7A 3I7MA 4U6ZA 3OOOA 3O5VA 2B3KA 2GG3A 4MATA 3PEBA 4FO8A 2GG2A 5D6FA 1C23A 3OVKA 1YW7A 3BIQA 4S01A 1YW9A 1XGMA 4ZWOA 4FUKA 3CTZA 5FCFA 2NQ7A 4ZNGA 2P98A 5E2CA 2Q92A 3MX6A 4A6WA 3TAVA 2B3HA 2GG9A 3IU8A 4IDYA 4EGEA 4U6JA 5CDLA 2ZSGA 2P9AA 1XGOA 2Q95A 5CIKA 1R5GA 2V3YA 1WY2A 3FM3A 3BITA 2GU7A 3PKAA 4FO7A 1WL6A 1A16A 4IKRA 1C27A 3D27A 2GG5A 2V6CA 5JI6A 1YJ3A 2GGCA 1WKMA 4IKTA 1QXZA 4U76A 3PKCA 4R60A 1W2MA 5JHUA 2GU6A 1MATA 3FMRA 2EVMA 1XNZA 4PV4A 1JAWA 4OOKA 2Q93A 2BHBA 2V3XA 4IF7A 4S00A 1KQ0A 4ZWPA
chains in the Genus database with same CATH superfamily
3IG4A 5D6EA 1R58A 1WLRA 1Y1NA 2BHCA 2Q8KA 2B3LA 3RVAA 5E5BA 1QXWA 4S2TP 2EVOA 1R5HA 3L24A 4U73A 1PV9A 4IECA 4IKUA 1N51A 1CHMA 2BWYA 3BIPA 1QXYA 1B59A 2EVCA 4FLJA 3TB5A 2Q96A 4Z7MA 4U71A 1KQ9A 2GU5A 1WN1A 5CDVA 3IL0A 2GZ5A 4KM3A 1O0XA 1YW8A 3CB5A 4RZZA 3IU9A 3IU7A 5JFRA 5CLSA 4U6CA 3S6BA 2GG7A 1B6AA 4U70A 2BN7A 4A6VA 2BWWA 2DFIA 2GA2A 4S2RP 2BWVA 2GTXA 2OAZA 4U6EA 3PN9A 2GG0A 2NQ6A 3QOCA 2BWXA 4RZYA 1XGNA 4U1BA 3L7GA 2BH3A 2GGBA 4QR8A 2IW2A 1C21A 4PNCA 1BN5A 1KP0A 2BWTA 1YVMA 4U69A 2ADUA 3MATA 3MR1A 2GG8A 1WL9A 5FCHA 3Q6DA 2GU4A 5CE6A 1M35A 5CDEA 3PKBA 1W7VA 1QZYA 2MATA 4IU6A 2Q94A 1WBQA 4FLLA 4U6WA 2EA4A 4IKSA 1C22A 3FMQA 4U75A 2BHAA 2V3ZA 3CB6A 2HOWA 2P99A 3RORA 4B28A 1BOAA 2G6PA 4FLKA 4FKCA 4RGZ1 2BWUA 1C24A 2EA2A 2OKNA 4JUQA 4ZWUA 4FLIA 4IPAA 3PKDA 2BWSA 3PKEA 4HXXA 5CNXA 2BHDA 1XGSA 2BB7A 3I7MA 4U6ZA 3OOOA 3O5VA 2B3KA 2GG3A 4MATA 3PEBA 4FO8A 2GG2A 5D6FA 1C23A 3OVKA 1YW7A 3BIQA 4S01A 1YW9A 1XGMA 4ZWOA 4FUKA 3CTZA 5FCFA 2NQ7A 4ZNGA 2P98A 5E2CA 2Q92A 3MX6A 4A6WA 3TAVA 2B3HA 2GG9A 3IU8A 4IDYA 4EGEA 4U6JA 5CDLA 2ZSGA 2P9AA 1XGOA 2Q95A 5CIKA 1R5GA 2V3YA 1WY2A 3FM3A 3BITA 2GU7A 3PKAA 4FO7A 1WL6A 1A16A 4IKRA 1C27A 3D27A 2GG5A 2V6CA 5JI6A 1YJ3A 2GGCA 1WKMA 4IKTA 1QXZA 4U76A 3PKCA 4R60A 1W2MA 5JHUA 2GU6A 1MATA 3FMRA 2EVMA 1XNZA 4PV4A 1JAWA 4OOKA 2Q93A 2BHBA 2V3XA 4IF7A 4S00A 1KQ0A 4ZWPA
chains in the Genus database with same CATH topology
3IG4A 5D6EA 1R58A 1WLRA 1Y1NA 2BHCA 2Q8KA 2B3LA 3RVAA 5E5BA 1QXWA 4S2TP 2EVOA 1R5HA 3L24A 4U73A 1PV9A 4IECA 4IKUA 1N51A 1CHMA 2BWYA 3BIPA 1QXYA 1B59A 2EVCA 4FLJA 3TB5A 2Q96A 4Z7MA 4U71A 1KQ9A 2GU5A 1WN1A 5CDVA 3IL0A 2GZ5A 4KM3A 1O0XA 1YW8A 3CB5A 4RZZA 3IU9A 3IU7A 5JFRA 5CLSA 4U6CA 3S6BA 2GG7A 1B6AA 4U70A 2BN7A 4A6VA 2BWWA 2DFIA 2GA2A 4S2RP 2BWVA 2GTXA 2OAZA 4U6EA 3PN9A 2GG0A 2NQ6A 3QOCA 2BWXA 4RZYA 1XGNA 4U1BA 3L7GA 2BH3A 2GGBA 4QR8A 2IW2A 1C21A 4PNCA 1BN5A 1KP0A 2BWTA 1YVMA 4U69A 2ADUA 3MATA 3MR1A 2GG8A 1WL9A 5FCHA 3Q6DA 2GU4A 5CE6A 1M35A 5CDEA 3PKBA 1W7VA 1QZYA 2MATA 4IU6A 2Q94A 1WBQA 4FLLA 4U6WA 2EA4A 4IKSA 1C22A 3FMQA 4U75A 2BHAA 2V3ZA 3CB6A 2HOWA 2P99A 3RORA 4B28A 1BOAA 2G6PA 4FLKA 4FKCA 4RGZ1 2BWUA 1C24A 2EA2A 2OKNA 4JUQA 4ZWUA 4FLIA 4IPAA 3PKDA 2BWSA 3PKEA 4HXXA 5CNXA 2BHDA 1XGSA 2BB7A 3I7MA 4U6ZA 3OOOA 3O5VA 2B3KA 2GG3A 4MATA 3PEBA 4FO8A 2GG2A 5D6FA 1C23A 3OVKA 1YW7A 3BIQA 4S01A 1YW9A 1XGMA 4ZWOA 4FUKA 3CTZA 5FCFA 2NQ7A 4ZNGA 2P98A 5E2CA 2Q92A 3MX6A 4A6WA 3TAVA 2B3HA 2GG9A 3IU8A 4IDYA 4EGEA 4U6JA 5CDLA 2ZSGA 2P9AA 1XGOA 2Q95A 5CIKA 1R5GA 2V3YA 1WY2A 3FM3A 3BITA 2GU7A 3PKAA 4FO7A 1WL6A 1A16A 4IKRA 1C27A 3D27A 2GG5A 2V6CA 5JI6A 1YJ3A 2GGCA 1WKMA 4IKTA 1QXZA 4U76A 3PKCA 4R60A 1W2MA 5JHUA 2GU6A 1MATA 3FMRA 2EVMA 1XNZA 4PV4A 1JAWA 4OOKA 2Q93A 2BHBA 2V3XA 4IF7A 4S00A 1KQ0A 4ZWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IG4 A;  5D6E A;  1R58 A;  1WLR A;  1Y1N A;  2BHC A;  2Q8K A;  2B3L A;  3RVA A;  5E5B A;  1QXW A;  4S2T P;  2EVO A;  1R5H A;  3L24 A;  4U73 A;  1PV9 A;  4IEC A;  4IKU A;  1N51 A;  1CHM A;  2BWY A;  3BIP A;  1QXY A;  1B59 A;  2EVC A;  4FLJ A;  3TB5 A;  2Q96 A;  4Z7M A;  4U71 A;  1KQ9 A;  2GU5 A;  1WN1 A;  5CDV A;  3IL0 A;  2GZ5 A;  4KM3 A;  1O0X A;  1YW8 A;  3CB5 A;  4RZZ A;  3IU9 A;  3IU7 A;  5JFR A;  5CLS A;  4U6C A;  3S6B A;  2GG7 A;  1B6A A;  4U70 A;  2BN7 A;  4A6V A;  2BWW A;  2DFI A;  2GA2 A;  4S2R P;  2BWV A;  2GTX A;  2OAZ A;  4U6E A;  3PN9 A;  2GG0 A;  2NQ6 A;  3QOC A;  2BWX A;  4RZY A;  1XGN A;  4U1B A;  3L7G A;  2BH3 A;  2GGB A;  4QR8 A;  2IW2 A;  1C21 A;  4PNC A;  1BN5 A;  1KP0 A;  2BWT A;  1YVM A;  4U69 A;  2ADU A;  3MAT A;  3MR1 A;  2GG8 A;  1WL9 A;  5FCH A;  3Q6D A;  2GU4 A;  5CE6 A;  1M35 A;  5CDE A;  3PKB A;  1W7V A;  1QZY A;  2MAT A;  4IU6 A;  2Q94 A;  1WBQ A;  4FLL A;  4U6W A;  2EA4 A;  4IKS A;  1C22 A;  3FMQ A;  4U75 A;  2BHA A;  2V3Z A;  3CB6 A;  2HOW A;  2P99 A;  3ROR A;  4B28 A;  1BOA A;  2G6P A;  4FLK A;  4FKC A;  4RGZ 1;  2BWU A;  1C24 A;  2EA2 A;  2OKN A;  4JUQ A;  4ZWU A;  4FLI A;  4IPA A;  3PKD A;  2BWS A;  3PKE A;  4HXX A;  5CNX A;  2BHD A;  1XGS A;  2BB7 A;  3I7M A;  4U6Z A;  3OOO A;  3O5V A;  2B3K A;  2GG3 A;  4MAT A;  3PEB A;  4FO8 A;  2GG2 A;  5D6F A;  1C23 A;  3OVK A;  1YW7 A;  3BIQ A;  4S01 A;  1YW9 A;  1XGM A;  4ZWO A;  4FUK A;  3CTZ A;  5FCF A;  2NQ7 A;  4ZNG A;  2P98 A;  5E2C A;  2Q92 A;  3MX6 A;  4A6W A;  3TAV A;  2B3H A;  2GG9 A;  3IU8 A;  4IDY A;  4EGE A;  4U6J A;  5CDL A;  2ZSG A;  2P9A A;  1XGO A;  2Q95 A;  5CIK A;  1R5G A;  2V3Y A;  1WY2 A;  3FM3 A;  3BIT A;  2GU7 A;  3PKA A;  4FO7 A;  1WL6 A;  1A16 A;  4IKR A;  1C27 A;  3D27 A;  2GG5 A;  2V6C A;  5JI6 A;  1YJ3 A;  2GGC A;  1WKM A;  4IKT A;  1QXZ A;  4U76 A;  3PKC A;  4R60 A;  1W2M A;  5JHU A;  2GU6 A;  1MAT A;  3FMR A;  2EVM A;  1XNZ A;  4PV4 A;  1JAW A;  4OOK A;  2Q93 A;  2BHB A;  2V3X A;  4IF7 A;  4S00 A;  1KQ0 A;  4ZWP A; 
#chains in the Genus database with same CATH topology
 3IG4 A;  5D6E A;  1R58 A;  1WLR A;  1Y1N A;  2BHC A;  2Q8K A;  2B3L A;  3RVA A;  5E5B A;  1QXW A;  4S2T P;  2EVO A;  1R5H A;  3L24 A;  4U73 A;  1PV9 A;  4IEC A;  4IKU A;  1N51 A;  1CHM A;  2BWY A;  3BIP A;  1QXY A;  1B59 A;  2EVC A;  4FLJ A;  3TB5 A;  2Q96 A;  4Z7M A;  4U71 A;  1KQ9 A;  2GU5 A;  1WN1 A;  5CDV A;  3IL0 A;  2GZ5 A;  4KM3 A;  1O0X A;  1YW8 A;  3CB5 A;  4RZZ A;  3IU9 A;  3IU7 A;  5JFR A;  5CLS A;  4U6C A;  3S6B A;  2GG7 A;  1B6A A;  4U70 A;  2BN7 A;  4A6V A;  2BWW A;  2DFI A;  2GA2 A;  4S2R P;  2BWV A;  2GTX A;  2OAZ A;  4U6E A;  3PN9 A;  2GG0 A;  2NQ6 A;  3QOC A;  2BWX A;  4RZY A;  1XGN A;  4U1B A;  3L7G A;  2BH3 A;  2GGB A;  4QR8 A;  2IW2 A;  1C21 A;  4PNC A;  1BN5 A;  1KP0 A;  2BWT A;  1YVM A;  4U69 A;  2ADU A;  3MAT A;  3MR1 A;  2GG8 A;  1WL9 A;  5FCH A;  3Q6D A;  2GU4 A;  5CE6 A;  1M35 A;  5CDE A;  3PKB A;  1W7V A;  1QZY A;  2MAT A;  4IU6 A;  2Q94 A;  1WBQ A;  4FLL A;  4U6W A;  2EA4 A;  4IKS A;  1C22 A;  3FMQ A;  4U75 A;  2BHA A;  2V3Z A;  3CB6 A;  2HOW A;  2P99 A;  3ROR A;  4B28 A;  1BOA A;  2G6P A;  4FLK A;  4FKC A;  4RGZ 1;  2BWU A;  1C24 A;  2EA2 A;  2OKN A;  4JUQ A;  4ZWU A;  4FLI A;  4IPA A;  3PKD A;  2BWS A;  3PKE A;  4HXX A;  5CNX A;  2BHD A;  1XGS A;  2BB7 A;  3I7M A;  4U6Z A;  3OOO A;  3O5V A;  2B3K A;  2GG3 A;  4MAT A;  3PEB A;  4FO8 A;  2GG2 A;  5D6F A;  1C23 A;  3OVK A;  1YW7 A;  3BIQ A;  4S01 A;  1YW9 A;  1XGM A;  4ZWO A;  4FUK A;  3CTZ A;  5FCF A;  2NQ7 A;  4ZNG A;  2P98 A;  5E2C A;  2Q92 A;  3MX6 A;  4A6W A;  3TAV A;  2B3H A;  2GG9 A;  3IU8 A;  4IDY A;  4EGE A;  4U6J A;  5CDL A;  2ZSG A;  2P9A A;  1XGO A;  2Q95 A;  5CIK A;  1R5G A;  2V3Y A;  1WY2 A;  3FM3 A;  3BIT A;  2GU7 A;  3PKA A;  4FO7 A;  1WL6 A;  1A16 A;  4IKR A;  1C27 A;  3D27 A;  2GG5 A;  2V6C A;  5JI6 A;  1YJ3 A;  2GGC A;  1WKM A;  4IKT A;  1QXZ A;  4U76 A;  3PKC A;  4R60 A;  1W2M A;  5JHU A;  2GU6 A;  1MAT A;  3FMR A;  2EVM A;  1XNZ A;  4PV4 A;  1JAW A;  4OOK A;  2Q93 A;  2BHB A;  2V3X A;  4IF7 A;  4S00 A;  1KQ0 A;  4ZWP A; 
#chains in the Genus database with same CATH homology
 3IG4 A;  5D6E A;  1R58 A;  1WLR A;  1Y1N A;  2BHC A;  2Q8K A;  2B3L A;  3RVA A;  5E5B A;  1QXW A;  4S2T P;  2EVO A;  1R5H A;  3L24 A;  4U73 A;  1PV9 A;  4IEC A;  4IKU A;  1N51 A;  1CHM A;  2BWY A;  3BIP A;  1QXY A;  1B59 A;  2EVC A;  4FLJ A;  3TB5 A;  2Q96 A;  4Z7M A;  4U71 A;  1KQ9 A;  2GU5 A;  1WN1 A;  5CDV A;  3IL0 A;  2GZ5 A;  4KM3 A;  1O0X A;  1YW8 A;  3CB5 A;  4RZZ A;  3IU9 A;  3IU7 A;  5JFR A;  5CLS A;  4U6C A;  3S6B A;  2GG7 A;  1B6A A;  4U70 A;  2BN7 A;  4A6V A;  2BWW A;  2DFI A;  2GA2 A;  4S2R P;  2BWV A;  2GTX A;  2OAZ A;  4U6E A;  3PN9 A;  2GG0 A;  2NQ6 A;  3QOC A;  2BWX A;  4RZY A;  1XGN A;  4U1B A;  3L7G A;  2BH3 A;  2GGB A;  4QR8 A;  2IW2 A;  1C21 A;  4PNC A;  1BN5 A;  1KP0 A;  2BWT A;  1YVM A;  4U69 A;  2ADU A;  3MAT A;  3MR1 A;  2GG8 A;  1WL9 A;  5FCH A;  3Q6D A;  2GU4 A;  5CE6 A;  1M35 A;  5CDE A;  3PKB A;  1W7V A;  1QZY A;  2MAT A;  4IU6 A;  2Q94 A;  1WBQ A;  4FLL A;  4U6W A;  2EA4 A;  4IKS A;  1C22 A;  3FMQ A;  4U75 A;  2BHA A;  2V3Z A;  3CB6 A;  2HOW A;  2P99 A;  3ROR A;  4B28 A;  1BOA A;  2G6P A;  4FLK A;  4FKC A;  4RGZ 1;  2BWU A;  1C24 A;  2EA2 A;  2OKN A;  4JUQ A;  4ZWU A;  4FLI A;  4IPA A;  3PKD A;  2BWS A;  3PKE A;  4HXX A;  5CNX A;  2BHD A;  1XGS A;  2BB7 A;  3I7M A;  4U6Z A;  3OOO A;  3O5V A;  2B3K A;  2GG3 A;  4MAT A;  3PEB A;  4FO8 A;  2GG2 A;  5D6F A;  1C23 A;  3OVK A;  1YW7 A;  3BIQ A;  4S01 A;  1YW9 A;  1XGM A;  4ZWO A;  4FUK A;  3CTZ A;  5FCF A;  2NQ7 A;  4ZNG A;  2P98 A;  5E2C A;  2Q92 A;  3MX6 A;  4A6W A;  3TAV A;  2B3H A;  2GG9 A;  3IU8 A;  4IDY A;  4EGE A;  4U6J A;  5CDL A;  2ZSG A;  2P9A A;  1XGO A;  2Q95 A;  5CIK A;  1R5G A;  2V3Y A;  1WY2 A;  3FM3 A;  3BIT A;  2GU7 A;  3PKA A;  4FO7 A;  1WL6 A;  1A16 A;  4IKR A;  1C27 A;  3D27 A;  2GG5 A;  2V6C A;  5JI6 A;  1YJ3 A;  2GGC A;  1WKM A;  4IKT A;  1QXZ A;  4U76 A;  3PKC A;  4R60 A;  1W2M A;  5JHU A;  2GU6 A;  1MAT A;  3FMR A;  2EVM A;  1XNZ A;  4PV4 A;  1JAW A;  4OOK A;  2Q93 A;  2BHB A;  2V3X A;  4IF7 A;  4S00 A;  1KQ0 A;  4ZWP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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