5CNXA

Crystal structure of xaa-pro aminopeptidase from escherichia coli k12
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
360
structure length
360
Chain Sequence
b'STLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aminopeptidase YpdF
publication title Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 121
structure length 360
sequence length 360
chains with identical sequence B, C
ec nomenclature ec 3.4.11.-:
pdb deposition date 2015-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cnxA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cnxA02
2GU5A 3PN9A 1QXWA 3MX6A 4JUQA 2V3XA 2BHCA 1C23A 3CB5A 4FKCA 3MATA 3IU7A 3RORA 1XGNA 3BIPA 3CTZA 5FCHA 3FM3A 2BN7A 3IU8A 4FO8A 5E5BA 1R5GA 2NQ6A 1YW8A 5CIKA 4FLKA 1B6AA 4IF7A 2V3YA 4IKTA 3Q6DA 3PKBA 2GZ5A 1C27A 4FLLA 1CHMA 4RGZ1 2OKNA 1WBQA 4U70A 4PNCA 1BOAA 3BIQA 2BWYA 5FCFA 3PKCA 4U6JA 5JFRA 4U6ZA 4U1BA 3TB5A 3PEBA 3D27A 2IW2A 4RZYA 4B28A 1Y1NA 2GU7A 4ZWOA 1C21A 1XNZA 1W7VA 2OAZA 2V3ZA 4U69A 4Z7MA 4S2RP 2Q92A 3I7MA 4U6CA 1YW9A 1WL6A 2B3LA 2EA4A 1WLRA 1YW7A 4R60A 2ADUA 2BHDA 4U73A 3IL0A 4EGEA 4U6WA 1XGSA 3FMRA 1WL9A 2EVMA 1KQ0A 2GG8A 3OOOA 2Q8KA 2GTXA 3L24A 1WKMA 2ZSGA 3O5VA 2G6PA 4IU6A 4FLIA 1QXZA 4IECA 1WN1A 1R5HA 5JHUA 2GG3A 2BWXA 1B59A 4KM3A 4IKUA 2GG5A 3FMQA 3RVAA 2BHAA 4ZNGA 5E2CA 4S01A 1R58A 2Q96A 3IU9A 4FO7A 3L7GA 2DFIA 4U75A 5D6FA 2GG9A 2GGBA 4U6EA 1A16A 4S2TP 2GG0A 1O0XA 4A6WA 2P99A 2Q93A 4IPAA 5CLSA 4PV4A 1XGMA 1QXYA 4FUKA 2BWSA 2P98A 2P9AA 2NQ7A 2MATA 3MR1A 1KQ9A 5CDEA 1W2MA 2B3KA 4MATA 5CDVA 1QZYA 2GU6A 2GU4A 4U76A 3QOCA 4OOKA 2EVOA 3PKEA 3PKAA 4HXXA 1MATA 4ZWUA 1KP0A 2Q94A 3TAVA 4A6VA 5JI6A 3CB6A 3OVKA 3PKDA 4U71A 2BWUA 1C24A 2V6CA 4IKRA 2GG7A 4S00A 2BWVA 2EVCA 5CE6A 1WY2A 1C22A 1YVMA 1YJ3A 2BHBA 2BB7A 4ZWPA 1N51A 3BITA 2EA2A 1XGOA 3IG4A 1PV9A 1M35A 2GGCA 2HOWA 2BH3A 2B3HA 2Q95A 1BN5A 4IDYA 4FLJA 2GG2A 5D6EA 4RZZA 2BWTA 2BWWA 4QR8A 3S6BA 5CNXA 2GA2A 4IKSA 5CDLA 1JAWA
chains in the Genus database with same CATH superfamily
2GU5A 3PN9A 1QXWA 3MX6A 4JUQA 2V3XA 2BHCA 1C23A 3CB5A 4FKCA 3MATA 3IU7A 3RORA 1XGNA 3BIPA 3CTZA 5FCHA 3FM3A 2BN7A 3IU8A 4FO8A 5E5BA 1R5GA 2NQ6A 1YW8A 5CIKA 4FLKA 1B6AA 4IF7A 2V3YA 4IKTA 3Q6DA 3PKBA 2GZ5A 1C27A 4FLLA 1CHMA 4RGZ1 2OKNA 1WBQA 4U70A 4PNCA 1BOAA 3BIQA 2BWYA 5FCFA 3PKCA 4U6JA 5JFRA 4U6ZA 4U1BA 3TB5A 3PEBA 3D27A 2IW2A 4RZYA 4B28A 1Y1NA 2GU7A 4ZWOA 1C21A 1XNZA 1W7VA 2OAZA 2V3ZA 4U69A 4Z7MA 4S2RP 2Q92A 3I7MA 4U6CA 1YW9A 1WL6A 2B3LA 2EA4A 1WLRA 1YW7A 4R60A 2ADUA 2BHDA 4U73A 3IL0A 4EGEA 4U6WA 1XGSA 3FMRA 1WL9A 2EVMA 1KQ0A 2GG8A 3OOOA 2Q8KA 2GTXA 3L24A 1WKMA 2ZSGA 3O5VA 2G6PA 4IU6A 4FLIA 1QXZA 4IECA 1WN1A 1R5HA 5JHUA 2GG3A 2BWXA 1B59A 4KM3A 4IKUA 2GG5A 3FMQA 3RVAA 2BHAA 4ZNGA 5E2CA 4S01A 1R58A 2Q96A 3IU9A 4FO7A 3L7GA 2DFIA 4U75A 5D6FA 2GG9A 2GGBA 4U6EA 1A16A 4S2TP 2GG0A 1O0XA 4A6WA 2P99A 2Q93A 4IPAA 5CLSA 4PV4A 1XGMA 1QXYA 4FUKA 2BWSA 2P98A 2P9AA 2NQ7A 2MATA 3MR1A 1KQ9A 5CDEA 1W2MA 2B3KA 4MATA 5CDVA 1QZYA 2GU6A 2GU4A 4U76A 3QOCA 4OOKA 2EVOA 3PKEA 3PKAA 4HXXA 1MATA 4ZWUA 1KP0A 2Q94A 3TAVA 4A6VA 5JI6A 3CB6A 3OVKA 3PKDA 4U71A 2BWUA 1C24A 2V6CA 4IKRA 2GG7A 4S00A 2BWVA 2EVCA 5CE6A 1WY2A 1C22A 1YVMA 1YJ3A 2BHBA 2BB7A 4ZWPA 1N51A 3BITA 2EA2A 1XGOA 3IG4A 1PV9A 1M35A 2GGCA 2HOWA 2BH3A 2B3HA 2Q95A 1BN5A 4IDYA 4FLJA 2GG2A 5D6EA 4RZZA 2BWTA 2BWWA 4QR8A 3S6BA 5CNXA 2GA2A 4IKSA 5CDLA 1JAWA
chains in the Genus database with same CATH topology
2GU5A 3PN9A 1QXWA 3MX6A 4JUQA 2V3XA 2BHCA 1C23A 3CB5A 4FKCA 3MATA 3IU7A 3RORA 1XGNA 3BIPA 3CTZA 5FCHA 3FM3A 2BN7A 3IU8A 4FO8A 5E5BA 1R5GA 2NQ6A 1YW8A 5CIKA 4FLKA 1B6AA 4IF7A 2V3YA 4IKTA 3Q6DA 3PKBA 2GZ5A 1C27A 4FLLA 1CHMA 4RGZ1 2OKNA 1WBQA 4U70A 4PNCA 1BOAA 3BIQA 2BWYA 5FCFA 3PKCA 4U6JA 5JFRA 4U6ZA 4U1BA 3TB5A 3PEBA 3D27A 2IW2A 4RZYA 4B28A 1Y1NA 2GU7A 4ZWOA 1C21A 1XNZA 1W7VA 2OAZA 2V3ZA 4U69A 4Z7MA 4S2RP 2Q92A 3I7MA 4U6CA 1YW9A 1WL6A 2B3LA 2EA4A 1WLRA 1YW7A 4R60A 2ADUA 2BHDA 4U73A 3IL0A 4EGEA 4U6WA 1XGSA 3FMRA 1WL9A 2EVMA 1KQ0A 2GG8A 3OOOA 2Q8KA 2GTXA 3L24A 1WKMA 2ZSGA 3O5VA 2G6PA 4IU6A 4FLIA 1QXZA 4IECA 1WN1A 1R5HA 5JHUA 2GG3A 2BWXA 1B59A 4KM3A 4IKUA 2GG5A 3FMQA 3RVAA 2BHAA 4ZNGA 5E2CA 4S01A 1R58A 2Q96A 3IU9A 4FO7A 3L7GA 2DFIA 4U75A 5D6FA 2GG9A 2GGBA 4U6EA 1A16A 4S2TP 2GG0A 1O0XA 4A6WA 2P99A 2Q93A 4IPAA 5CLSA 4PV4A 1XGMA 1QXYA 4FUKA 2BWSA 2P98A 2P9AA 2NQ7A 2MATA 3MR1A 1KQ9A 5CDEA 1W2MA 2B3KA 4MATA 5CDVA 1QZYA 2GU6A 2GU4A 4U76A 3QOCA 4OOKA 2EVOA 3PKEA 3PKAA 4HXXA 1MATA 4ZWUA 1KP0A 2Q94A 3TAVA 4A6VA 5JI6A 3CB6A 3OVKA 3PKDA 4U71A 2BWUA 1C24A 2V6CA 4IKRA 2GG7A 4S00A 2BWVA 2EVCA 5CE6A 1WY2A 1C22A 1YVMA 1YJ3A 2BHBA 2BB7A 4ZWPA 1N51A 3BITA 2EA2A 1XGOA 3IG4A 1PV9A 1M35A 2GGCA 2HOWA 2BH3A 2B3HA 2Q95A 1BN5A 4IDYA 4FLJA 2GG2A 5D6EA 4RZZA 2BWTA 2BWWA 4QR8A 3S6BA 5CNXA 2GA2A 4IKSA 5CDLA 1JAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GU5 A;  3PN9 A;  1QXW A;  3MX6 A;  4JUQ A;  2V3X A;  2BHC A;  1C23 A;  3CB5 A;  4FKC A;  3MAT A;  3IU7 A;  3ROR A;  1XGN A;  3BIP A;  3CTZ A;  5FCH A;  3FM3 A;  2BN7 A;  3IU8 A;  4FO8 A;  5E5B A;  1R5G A;  2NQ6 A;  1YW8 A;  5CIK A;  4FLK A;  1B6A A;  4IF7 A;  2V3Y A;  4IKT A;  3Q6D A;  3PKB A;  2GZ5 A;  1C27 A;  4FLL A;  1CHM A;  4RGZ 1;  2OKN A;  1WBQ A;  4U70 A;  4PNC A;  1BOA A;  3BIQ A;  2BWY A;  5FCF A;  3PKC A;  4U6J A;  5JFR A;  4U6Z A;  4U1B A;  3TB5 A;  3PEB A;  3D27 A;  2IW2 A;  4RZY A;  4B28 A;  1Y1N A;  2GU7 A;  4ZWO A;  1C21 A;  1XNZ A;  1W7V A;  2OAZ A;  2V3Z A;  4U69 A;  4Z7M A;  4S2R P;  2Q92 A;  3I7M A;  4U6C A;  1YW9 A;  1WL6 A;  2B3L A;  2EA4 A;  1WLR A;  1YW7 A;  4R60 A;  2ADU A;  2BHD A;  4U73 A;  3IL0 A;  4EGE A;  4U6W A;  1XGS A;  3FMR A;  1WL9 A;  2EVM A;  1KQ0 A;  2GG8 A;  3OOO A;  2Q8K A;  2GTX A;  3L24 A;  1WKM A;  2ZSG A;  3O5V A;  2G6P A;  4IU6 A;  4FLI A;  1QXZ A;  4IEC A;  1WN1 A;  1R5H A;  5JHU A;  2GG3 A;  2BWX A;  1B59 A;  4KM3 A;  4IKU A;  2GG5 A;  3FMQ A;  3RVA A;  2BHA A;  4ZNG A;  5E2C A;  4S01 A;  1R58 A;  2Q96 A;  3IU9 A;  4FO7 A;  3L7G A;  2DFI A;  4U75 A;  5D6F A;  2GG9 A;  2GGB A;  4U6E A;  1A16 A;  4S2T P;  2GG0 A;  1O0X A;  4A6W A;  2P99 A;  2Q93 A;  4IPA A;  5CLS A;  4PV4 A;  1XGM A;  1QXY A;  4FUK A;  2BWS A;  2P98 A;  2P9A A;  2NQ7 A;  2MAT A;  3MR1 A;  1KQ9 A;  5CDE A;  1W2M A;  2B3K A;  4MAT A;  5CDV A;  1QZY A;  2GU6 A;  2GU4 A;  4U76 A;  3QOC A;  4OOK A;  2EVO A;  3PKE A;  3PKA A;  4HXX A;  1MAT A;  4ZWU A;  1KP0 A;  2Q94 A;  3TAV A;  4A6V A;  5JI6 A;  3CB6 A;  3OVK A;  3PKD A;  4U71 A;  2BWU A;  1C24 A;  2V6C A;  4IKR A;  2GG7 A;  4S00 A;  2BWV A;  2EVC A;  5CE6 A;  1WY2 A;  1C22 A;  1YVM A;  1YJ3 A;  2BHB A;  2BB7 A;  4ZWP A;  1N51 A;  3BIT A;  2EA2 A;  1XGO A;  3IG4 A;  1PV9 A;  1M35 A;  2GGC A;  2HOW A;  2BH3 A;  2B3H A;  2Q95 A;  1BN5 A;  4IDY A;  4FLJ A;  2GG2 A;  5D6E A;  4RZZ A;  2BWT A;  2BWW A;  4QR8 A;  3S6B A;  5CNX A;  2GA2 A;  4IKS A;  5CDL A;  1JAW A; 
#chains in the Genus database with same CATH topology
 2GU5 A;  3PN9 A;  1QXW A;  3MX6 A;  4JUQ A;  2V3X A;  2BHC A;  1C23 A;  3CB5 A;  4FKC A;  3MAT A;  3IU7 A;  3ROR A;  1XGN A;  3BIP A;  3CTZ A;  5FCH A;  3FM3 A;  2BN7 A;  3IU8 A;  4FO8 A;  5E5B A;  1R5G A;  2NQ6 A;  1YW8 A;  5CIK A;  4FLK A;  1B6A A;  4IF7 A;  2V3Y A;  4IKT A;  3Q6D A;  3PKB A;  2GZ5 A;  1C27 A;  4FLL A;  1CHM A;  4RGZ 1;  2OKN A;  1WBQ A;  4U70 A;  4PNC A;  1BOA A;  3BIQ A;  2BWY A;  5FCF A;  3PKC A;  4U6J A;  5JFR A;  4U6Z A;  4U1B A;  3TB5 A;  3PEB A;  3D27 A;  2IW2 A;  4RZY A;  4B28 A;  1Y1N A;  2GU7 A;  4ZWO A;  1C21 A;  1XNZ A;  1W7V A;  2OAZ A;  2V3Z A;  4U69 A;  4Z7M A;  4S2R P;  2Q92 A;  3I7M A;  4U6C A;  1YW9 A;  1WL6 A;  2B3L A;  2EA4 A;  1WLR A;  1YW7 A;  4R60 A;  2ADU A;  2BHD A;  4U73 A;  3IL0 A;  4EGE A;  4U6W A;  1XGS A;  3FMR A;  1WL9 A;  2EVM A;  1KQ0 A;  2GG8 A;  3OOO A;  2Q8K A;  2GTX A;  3L24 A;  1WKM A;  2ZSG A;  3O5V A;  2G6P A;  4IU6 A;  4FLI A;  1QXZ A;  4IEC A;  1WN1 A;  1R5H A;  5JHU A;  2GG3 A;  2BWX A;  1B59 A;  4KM3 A;  4IKU A;  2GG5 A;  3FMQ A;  3RVA A;  2BHA A;  4ZNG A;  5E2C A;  4S01 A;  1R58 A;  2Q96 A;  3IU9 A;  4FO7 A;  3L7G A;  2DFI A;  4U75 A;  5D6F A;  2GG9 A;  2GGB A;  4U6E A;  1A16 A;  4S2T P;  2GG0 A;  1O0X A;  4A6W A;  2P99 A;  2Q93 A;  4IPA A;  5CLS A;  4PV4 A;  1XGM A;  1QXY A;  4FUK A;  2BWS A;  2P98 A;  2P9A A;  2NQ7 A;  2MAT A;  3MR1 A;  1KQ9 A;  5CDE A;  1W2M A;  2B3K A;  4MAT A;  5CDV A;  1QZY A;  2GU6 A;  2GU4 A;  4U76 A;  3QOC A;  4OOK A;  2EVO A;  3PKE A;  3PKA A;  4HXX A;  1MAT A;  4ZWU A;  1KP0 A;  2Q94 A;  3TAV A;  4A6V A;  5JI6 A;  3CB6 A;  3OVK A;  3PKD A;  4U71 A;  2BWU A;  1C24 A;  2V6C A;  4IKR A;  2GG7 A;  4S00 A;  2BWV A;  2EVC A;  5CE6 A;  1WY2 A;  1C22 A;  1YVM A;  1YJ3 A;  2BHB A;  2BB7 A;  4ZWP A;  1N51 A;  3BIT A;  2EA2 A;  1XGO A;  3IG4 A;  1PV9 A;  1M35 A;  2GGC A;  2HOW A;  2BH3 A;  2B3H A;  2Q95 A;  1BN5 A;  4IDY A;  4FLJ A;  2GG2 A;  5D6E A;  4RZZ A;  2BWT A;  2BWW A;  4QR8 A;  3S6B A;  5CNX A;  2GA2 A;  4IKS A;  5CDL A;  1JAW A; 
#chains in the Genus database with same CATH homology
 2GU5 A;  3PN9 A;  1QXW A;  3MX6 A;  4JUQ A;  2V3X A;  2BHC A;  1C23 A;  3CB5 A;  4FKC A;  3MAT A;  3IU7 A;  3ROR A;  1XGN A;  3BIP A;  3CTZ A;  5FCH A;  3FM3 A;  2BN7 A;  3IU8 A;  4FO8 A;  5E5B A;  1R5G A;  2NQ6 A;  1YW8 A;  5CIK A;  4FLK A;  1B6A A;  4IF7 A;  2V3Y A;  4IKT A;  3Q6D A;  3PKB A;  2GZ5 A;  1C27 A;  4FLL A;  1CHM A;  4RGZ 1;  2OKN A;  1WBQ A;  4U70 A;  4PNC A;  1BOA A;  3BIQ A;  2BWY A;  5FCF A;  3PKC A;  4U6J A;  5JFR A;  4U6Z A;  4U1B A;  3TB5 A;  3PEB A;  3D27 A;  2IW2 A;  4RZY A;  4B28 A;  1Y1N A;  2GU7 A;  4ZWO A;  1C21 A;  1XNZ A;  1W7V A;  2OAZ A;  2V3Z A;  4U69 A;  4Z7M A;  4S2R P;  2Q92 A;  3I7M A;  4U6C A;  1YW9 A;  1WL6 A;  2B3L A;  2EA4 A;  1WLR A;  1YW7 A;  4R60 A;  2ADU A;  2BHD A;  4U73 A;  3IL0 A;  4EGE A;  4U6W A;  1XGS A;  3FMR A;  1WL9 A;  2EVM A;  1KQ0 A;  2GG8 A;  3OOO A;  2Q8K A;  2GTX A;  3L24 A;  1WKM A;  2ZSG A;  3O5V A;  2G6P A;  4IU6 A;  4FLI A;  1QXZ A;  4IEC A;  1WN1 A;  1R5H A;  5JHU A;  2GG3 A;  2BWX A;  1B59 A;  4KM3 A;  4IKU A;  2GG5 A;  3FMQ A;  3RVA A;  2BHA A;  4ZNG A;  5E2C A;  4S01 A;  1R58 A;  2Q96 A;  3IU9 A;  4FO7 A;  3L7G A;  2DFI A;  4U75 A;  5D6F A;  2GG9 A;  2GGB A;  4U6E A;  1A16 A;  4S2T P;  2GG0 A;  1O0X A;  4A6W A;  2P99 A;  2Q93 A;  4IPA A;  5CLS A;  4PV4 A;  1XGM A;  1QXY A;  4FUK A;  2BWS A;  2P98 A;  2P9A A;  2NQ7 A;  2MAT A;  3MR1 A;  1KQ9 A;  5CDE A;  1W2M A;  2B3K A;  4MAT A;  5CDV A;  1QZY A;  2GU6 A;  2GU4 A;  4U76 A;  3QOC A;  4OOK A;  2EVO A;  3PKE A;  3PKA A;  4HXX A;  1MAT A;  4ZWU A;  1KP0 A;  2Q94 A;  3TAV A;  4A6V A;  5JI6 A;  3CB6 A;  3OVK A;  3PKD A;  4U71 A;  2BWU A;  1C24 A;  2V6C A;  4IKR A;  2GG7 A;  4S00 A;  2BWV A;  2EVC A;  5CE6 A;  1WY2 A;  1C22 A;  1YVM A;  1YJ3 A;  2BHB A;  2BB7 A;  4ZWP A;  1N51 A;  3BIT A;  2EA2 A;  1XGO A;  3IG4 A;  1PV9 A;  1M35 A;  2GGC A;  2HOW A;  2BH3 A;  2B3H A;  2Q95 A;  1BN5 A;  4IDY A;  4FLJ A;  2GG2 A;  5D6E A;  4RZZ A;  2BWT A;  2BWW A;  4QR8 A;  3S6B A;  5CNX A;  2GA2 A;  4IKS A;  5CDL A;  1JAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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