4PV4A

Proline aminopeptidase p ii from yersinia pestis
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
436
structure length
436
Chain Sequence
b'MTQQEYQNRRQALLAKMAPGSAAIIFAAPEATRSADSEYPYRQNSDFSYLTGFNEPEAVLILVKSDETHNHSVLFNRIRDLTAEIWFGRRLGQEAAPTKLAVDRALPFDEINEQLYLLLNRLDVIYHAQGQYAYADNIVFAALEKLRHGFRKNLRAPATLTDWRPWLHEMRLFKSAEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFTRHGARYPAYNTIVGGGENGCILHYTENECELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFTPAQRAVYDIVLAAINKSLTLFRPGTSIREVTEEVVRIMVVGLVELGILKGDIEQLIAEQAHRPFFMHGLSHWLGMDVHDVGDYGSSDRGRILEPGMVLTVEPGLYIAPDADVPPQYRGIGIRIEDDIVITATGNENLTASVVKDPDDIEALMALN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule keywords Proline aminopeptidase P II
publication title Proline aminopeptidase P II from Yersinia pestis
rcsb
source organism Yersinia pestis
molecule tags Hydrolase
total genus 158
structure length 436
sequence length 436
chains with identical sequence B
ec nomenclature ec 3.4.11.9: Xaa-Pro aminopeptidase.
pdb deposition date 2014-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4pv4A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4pv4A02
4ZWPA 5CDVA 1O0XA 4S2RP 1YJ3A 4U1BA 2BWXA 1KQ0A 4FO8A 1YVMA 1A16A 2B3LA 1XGMA 3IL0A 4U6JA 3OVKA 2V3ZA 1B6AA 1YW9A 4HXXA 1WKMA 3PKBA 3BIPA 4IU6A 1BN5A 4IKTA 1XNZA 1N51A 1R5GA 2P9AA 2V3XA 4S2TP 2V3YA 5E2CA 2GZ5A 4RZYA 2BWSA 2GGBA 3BIQA 3PN9A 4U6ZA 1C22A 2BHBA 5JFRA 4FKCA 1QXYA 5CIKA 1WL9A 2OAZA 4U71A 2Q94A 3IG4A 2Q95A 2GG7A 1QZYA 4IDYA 4ZWOA 1PV9A 2EVCA 1WN1A 3IU7A 2BB7A 2DFIA 2GU7A 4U76A 5D6EA 3FMRA 1WBQA 3MR1A 1W2MA 2BHCA 4RGZ1 2Q8KA 2BWTA 4U75A 5FCHA 4S00A 4IF7A 1XGOA 3FM3A 2V6CA 2GU6A 5JI6A 3IU9A 1B59A 3MATA 4A6WA 3L24A 2NQ6A 5CLSA 4FLLA 4ZWUA 3Q6DA 4R60A 1WY2A 4IECA 1R5HA 2BWWA 1WL6A 4S01A 5CE6A 4IKUA 3FMQA 4ZNGA 4IPAA 2BN7A 4A6VA 1WLRA 4U70A 1XGNA 2EA4A 2GG2A 2BH3A 1C24A 3TB5A 3PEBA 1YW7A 3L7GA 4B28A 4EGEA 2BWYA 2EVOA 5FCFA 2G6PA 4U73A 4IKSA 4PNCA 3CB5A 1M35A 2BHDA 1KQ9A 5CDEA 2B3HA 4MATA 2EA2A 4IKRA 2EVMA 4FUKA 5E5BA 3RVAA 1C27A 2P99A 3RORA 2BHAA 3PKCA 1BOAA 3CTZA 3OOOA 3MX6A 2GGCA 2ADUA 2ZSGA 4PV4A 2GU4A 4OOKA 3D27A 3O5VA 5D6FA 1KP0A 2GG3A 3TAVA 3PKDA 4Z7MA 1QXWA 2OKNA 4KM3A 2BWVA 2GG9A 1W7VA 2MATA 2Q96A 4JUQA 2GG8A 4U6EA 4U69A 2GA2A 2GTXA 1MATA 2GG0A 2NQ7A 1XGSA 1C21A 5CDLA 4U6WA 4FLKA 2GU5A 4FO7A 2HOWA 4QR8A 5CNXA 2IW2A 4RZZA 2P98A 3PKAA 1Y1NA 4FLJA 2B3KA 3PKEA 3IU8A 2Q92A 3CB6A 1R58A 2GG5A 3S6BA 1QXZA 3BITA 1CHMA 3QOCA 2Q93A 4FLIA 2BWUA 4U6CA 5JHUA 1JAWA 1C23A 1YW8A 3I7MA
chains in the Genus database with same CATH superfamily
4ZWPA 5CDVA 1O0XA 4S2RP 1YJ3A 4U1BA 2BWXA 1KQ0A 4FO8A 1YVMA 1A16A 2B3LA 1XGMA 3IL0A 4U6JA 3OVKA 2V3ZA 1B6AA 1YW9A 4HXXA 1WKMA 3PKBA 3BIPA 4IU6A 1BN5A 4IKTA 1XNZA 1N51A 1R5GA 2P9AA 2V3XA 4S2TP 2V3YA 5E2CA 2GZ5A 4RZYA 2BWSA 2GGBA 3BIQA 3PN9A 4U6ZA 1C22A 2BHBA 5JFRA 4FKCA 1QXYA 5CIKA 1WL9A 2OAZA 4U71A 2Q94A 3IG4A 2Q95A 2GG7A 1QZYA 4IDYA 4ZWOA 1PV9A 2EVCA 1WN1A 3IU7A 2BB7A 2DFIA 2GU7A 4U76A 5D6EA 3FMRA 1WBQA 3MR1A 1W2MA 2BHCA 4RGZ1 2Q8KA 2BWTA 4U75A 5FCHA 4S00A 4IF7A 1XGOA 3FM3A 2V6CA 2GU6A 5JI6A 3IU9A 1B59A 3MATA 4A6WA 3L24A 2NQ6A 5CLSA 4FLLA 4ZWUA 3Q6DA 4R60A 1WY2A 4IECA 1R5HA 2BWWA 1WL6A 4S01A 5CE6A 4IKUA 3FMQA 4ZNGA 4IPAA 2BN7A 4A6VA 1WLRA 4U70A 1XGNA 2EA4A 2GG2A 2BH3A 1C24A 3TB5A 3PEBA 1YW7A 3L7GA 4B28A 4EGEA 2BWYA 2EVOA 5FCFA 2G6PA 4U73A 4IKSA 4PNCA 3CB5A 1M35A 2BHDA 1KQ9A 5CDEA 2B3HA 4MATA 2EA2A 4IKRA 2EVMA 4FUKA 5E5BA 3RVAA 1C27A 2P99A 3RORA 2BHAA 3PKCA 1BOAA 3CTZA 3OOOA 3MX6A 2GGCA 2ADUA 2ZSGA 4PV4A 2GU4A 4OOKA 3D27A 3O5VA 5D6FA 1KP0A 2GG3A 3TAVA 3PKDA 4Z7MA 1QXWA 2OKNA 4KM3A 2BWVA 2GG9A 1W7VA 2MATA 2Q96A 4JUQA 2GG8A 4U6EA 4U69A 2GA2A 2GTXA 1MATA 2GG0A 2NQ7A 1XGSA 1C21A 5CDLA 4U6WA 4FLKA 2GU5A 4FO7A 2HOWA 4QR8A 5CNXA 2IW2A 4RZZA 2P98A 3PKAA 1Y1NA 4FLJA 2B3KA 3PKEA 3IU8A 2Q92A 3CB6A 1R58A 2GG5A 3S6BA 1QXZA 3BITA 1CHMA 3QOCA 2Q93A 4FLIA 2BWUA 4U6CA 5JHUA 1JAWA 1C23A 1YW8A 3I7MA
chains in the Genus database with same CATH topology
4ZWPA 5CDVA 1O0XA 4S2RP 1YJ3A 4U1BA 2BWXA 1KQ0A 4FO8A 1YVMA 1A16A 2B3LA 1XGMA 3IL0A 4U6JA 3OVKA 2V3ZA 1B6AA 1YW9A 4HXXA 1WKMA 3PKBA 3BIPA 4IU6A 1BN5A 4IKTA 1XNZA 1N51A 1R5GA 2P9AA 2V3XA 4S2TP 2V3YA 5E2CA 2GZ5A 4RZYA 2BWSA 2GGBA 3BIQA 3PN9A 4U6ZA 1C22A 2BHBA 5JFRA 4FKCA 1QXYA 5CIKA 1WL9A 2OAZA 4U71A 2Q94A 3IG4A 2Q95A 2GG7A 1QZYA 4IDYA 4ZWOA 1PV9A 2EVCA 1WN1A 3IU7A 2BB7A 2DFIA 2GU7A 4U76A 5D6EA 3FMRA 1WBQA 3MR1A 1W2MA 2BHCA 4RGZ1 2Q8KA 2BWTA 4U75A 5FCHA 4S00A 4IF7A 1XGOA 3FM3A 2V6CA 2GU6A 5JI6A 3IU9A 1B59A 3MATA 4A6WA 3L24A 2NQ6A 5CLSA 4FLLA 4ZWUA 3Q6DA 4R60A 1WY2A 4IECA 1R5HA 2BWWA 1WL6A 4S01A 5CE6A 4IKUA 3FMQA 4ZNGA 4IPAA 2BN7A 4A6VA 1WLRA 4U70A 1XGNA 2EA4A 2GG2A 2BH3A 1C24A 3TB5A 3PEBA 1YW7A 3L7GA 4B28A 4EGEA 2BWYA 2EVOA 5FCFA 2G6PA 4U73A 4IKSA 4PNCA 3CB5A 1M35A 2BHDA 1KQ9A 5CDEA 2B3HA 4MATA 2EA2A 4IKRA 2EVMA 4FUKA 5E5BA 3RVAA 1C27A 2P99A 3RORA 2BHAA 3PKCA 1BOAA 3CTZA 3OOOA 3MX6A 2GGCA 2ADUA 2ZSGA 4PV4A 2GU4A 4OOKA 3D27A 3O5VA 5D6FA 1KP0A 2GG3A 3TAVA 3PKDA 4Z7MA 1QXWA 2OKNA 4KM3A 2BWVA 2GG9A 1W7VA 2MATA 2Q96A 4JUQA 2GG8A 4U6EA 4U69A 2GA2A 2GTXA 1MATA 2GG0A 2NQ7A 1XGSA 1C21A 5CDLA 4U6WA 4FLKA 2GU5A 4FO7A 2HOWA 4QR8A 5CNXA 2IW2A 4RZZA 2P98A 3PKAA 1Y1NA 4FLJA 2B3KA 3PKEA 3IU8A 2Q92A 3CB6A 1R58A 2GG5A 3S6BA 1QXZA 3BITA 1CHMA 3QOCA 2Q93A 4FLIA 2BWUA 4U6CA 5JHUA 1JAWA 1C23A 1YW8A 3I7MA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4ZWP A;  5CDV A;  1O0X A;  4S2R P;  1YJ3 A;  4U1B A;  2BWX A;  1KQ0 A;  4FO8 A;  1YVM A;  1A16 A;  2B3L A;  1XGM A;  3IL0 A;  4U6J A;  3OVK A;  2V3Z A;  1B6A A;  1YW9 A;  4HXX A;  1WKM A;  3PKB A;  3BIP A;  4IU6 A;  1BN5 A;  4IKT A;  1XNZ A;  1N51 A;  1R5G A;  2P9A A;  2V3X A;  4S2T P;  2V3Y A;  5E2C A;  2GZ5 A;  4RZY A;  2BWS A;  2GGB A;  3BIQ A;  3PN9 A;  4U6Z A;  1C22 A;  2BHB A;  5JFR A;  4FKC A;  1QXY A;  5CIK A;  1WL9 A;  2OAZ A;  4U71 A;  2Q94 A;  3IG4 A;  2Q95 A;  2GG7 A;  1QZY A;  4IDY A;  4ZWO A;  1PV9 A;  2EVC A;  1WN1 A;  3IU7 A;  2BB7 A;  2DFI A;  2GU7 A;  4U76 A;  5D6E A;  3FMR A;  1WBQ A;  3MR1 A;  1W2M A;  2BHC A;  4RGZ 1;  2Q8K A;  2BWT A;  4U75 A;  5FCH A;  4S00 A;  4IF7 A;  1XGO A;  3FM3 A;  2V6C A;  2GU6 A;  5JI6 A;  3IU9 A;  1B59 A;  3MAT A;  4A6W A;  3L24 A;  2NQ6 A;  5CLS A;  4FLL A;  4ZWU A;  3Q6D A;  4R60 A;  1WY2 A;  4IEC A;  1R5H A;  2BWW A;  1WL6 A;  4S01 A;  5CE6 A;  4IKU A;  3FMQ A;  4ZNG A;  4IPA A;  2BN7 A;  4A6V A;  1WLR A;  4U70 A;  1XGN A;  2EA4 A;  2GG2 A;  2BH3 A;  1C24 A;  3TB5 A;  3PEB A;  1YW7 A;  3L7G A;  4B28 A;  4EGE A;  2BWY A;  2EVO A;  5FCF A;  2G6P A;  4U73 A;  4IKS A;  4PNC A;  3CB5 A;  1M35 A;  2BHD A;  1KQ9 A;  5CDE A;  2B3H A;  4MAT A;  2EA2 A;  4IKR A;  2EVM A;  4FUK A;  5E5B A;  3RVA A;  1C27 A;  2P99 A;  3ROR A;  2BHA A;  3PKC A;  1BOA A;  3CTZ A;  3OOO A;  3MX6 A;  2GGC A;  2ADU A;  2ZSG A;  4PV4 A;  2GU4 A;  4OOK A;  3D27 A;  3O5V A;  5D6F A;  1KP0 A;  2GG3 A;  3TAV A;  3PKD A;  4Z7M A;  1QXW A;  2OKN A;  4KM3 A;  2BWV A;  2GG9 A;  1W7V A;  2MAT A;  2Q96 A;  4JUQ A;  2GG8 A;  4U6E A;  4U69 A;  2GA2 A;  2GTX A;  1MAT A;  2GG0 A;  2NQ7 A;  1XGS A;  1C21 A;  5CDL A;  4U6W A;  4FLK A;  2GU5 A;  4FO7 A;  2HOW A;  4QR8 A;  5CNX A;  2IW2 A;  4RZZ A;  2P98 A;  3PKA A;  1Y1N A;  4FLJ A;  2B3K A;  3PKE A;  3IU8 A;  2Q92 A;  3CB6 A;  1R58 A;  2GG5 A;  3S6B A;  1QXZ A;  3BIT A;  1CHM A;  3QOC A;  2Q93 A;  4FLI A;  2BWU A;  4U6C A;  5JHU A;  1JAW A;  1C23 A;  1YW8 A;  3I7M A; 
#chains in the Genus database with same CATH topology
 4ZWP A;  5CDV A;  1O0X A;  4S2R P;  1YJ3 A;  4U1B A;  2BWX A;  1KQ0 A;  4FO8 A;  1YVM A;  1A16 A;  2B3L A;  1XGM A;  3IL0 A;  4U6J A;  3OVK A;  2V3Z A;  1B6A A;  1YW9 A;  4HXX A;  1WKM A;  3PKB A;  3BIP A;  4IU6 A;  1BN5 A;  4IKT A;  1XNZ A;  1N51 A;  1R5G A;  2P9A A;  2V3X A;  4S2T P;  2V3Y A;  5E2C A;  2GZ5 A;  4RZY A;  2BWS A;  2GGB A;  3BIQ A;  3PN9 A;  4U6Z A;  1C22 A;  2BHB A;  5JFR A;  4FKC A;  1QXY A;  5CIK A;  1WL9 A;  2OAZ A;  4U71 A;  2Q94 A;  3IG4 A;  2Q95 A;  2GG7 A;  1QZY A;  4IDY A;  4ZWO A;  1PV9 A;  2EVC A;  1WN1 A;  3IU7 A;  2BB7 A;  2DFI A;  2GU7 A;  4U76 A;  5D6E A;  3FMR A;  1WBQ A;  3MR1 A;  1W2M A;  2BHC A;  4RGZ 1;  2Q8K A;  2BWT A;  4U75 A;  5FCH A;  4S00 A;  4IF7 A;  1XGO A;  3FM3 A;  2V6C A;  2GU6 A;  5JI6 A;  3IU9 A;  1B59 A;  3MAT A;  4A6W A;  3L24 A;  2NQ6 A;  5CLS A;  4FLL A;  4ZWU A;  3Q6D A;  4R60 A;  1WY2 A;  4IEC A;  1R5H A;  2BWW A;  1WL6 A;  4S01 A;  5CE6 A;  4IKU A;  3FMQ A;  4ZNG A;  4IPA A;  2BN7 A;  4A6V A;  1WLR A;  4U70 A;  1XGN A;  2EA4 A;  2GG2 A;  2BH3 A;  1C24 A;  3TB5 A;  3PEB A;  1YW7 A;  3L7G A;  4B28 A;  4EGE A;  2BWY A;  2EVO A;  5FCF A;  2G6P A;  4U73 A;  4IKS A;  4PNC A;  3CB5 A;  1M35 A;  2BHD A;  1KQ9 A;  5CDE A;  2B3H A;  4MAT A;  2EA2 A;  4IKR A;  2EVM A;  4FUK A;  5E5B A;  3RVA A;  1C27 A;  2P99 A;  3ROR A;  2BHA A;  3PKC A;  1BOA A;  3CTZ A;  3OOO A;  3MX6 A;  2GGC A;  2ADU A;  2ZSG A;  4PV4 A;  2GU4 A;  4OOK A;  3D27 A;  3O5V A;  5D6F A;  1KP0 A;  2GG3 A;  3TAV A;  3PKD A;  4Z7M A;  1QXW A;  2OKN A;  4KM3 A;  2BWV A;  2GG9 A;  1W7V A;  2MAT A;  2Q96 A;  4JUQ A;  2GG8 A;  4U6E A;  4U69 A;  2GA2 A;  2GTX A;  1MAT A;  2GG0 A;  2NQ7 A;  1XGS A;  1C21 A;  5CDL A;  4U6W A;  4FLK A;  2GU5 A;  4FO7 A;  2HOW A;  4QR8 A;  5CNX A;  2IW2 A;  4RZZ A;  2P98 A;  3PKA A;  1Y1N A;  4FLJ A;  2B3K A;  3PKE A;  3IU8 A;  2Q92 A;  3CB6 A;  1R58 A;  2GG5 A;  3S6B A;  1QXZ A;  3BIT A;  1CHM A;  3QOC A;  2Q93 A;  4FLI A;  2BWU A;  4U6C A;  5JHU A;  1JAW A;  1C23 A;  1YW8 A;  3I7M A; 
#chains in the Genus database with same CATH homology
 4ZWP A;  5CDV A;  1O0X A;  4S2R P;  1YJ3 A;  4U1B A;  2BWX A;  1KQ0 A;  4FO8 A;  1YVM A;  1A16 A;  2B3L A;  1XGM A;  3IL0 A;  4U6J A;  3OVK A;  2V3Z A;  1B6A A;  1YW9 A;  4HXX A;  1WKM A;  3PKB A;  3BIP A;  4IU6 A;  1BN5 A;  4IKT A;  1XNZ A;  1N51 A;  1R5G A;  2P9A A;  2V3X A;  4S2T P;  2V3Y A;  5E2C A;  2GZ5 A;  4RZY A;  2BWS A;  2GGB A;  3BIQ A;  3PN9 A;  4U6Z A;  1C22 A;  2BHB A;  5JFR A;  4FKC A;  1QXY A;  5CIK A;  1WL9 A;  2OAZ A;  4U71 A;  2Q94 A;  3IG4 A;  2Q95 A;  2GG7 A;  1QZY A;  4IDY A;  4ZWO A;  1PV9 A;  2EVC A;  1WN1 A;  3IU7 A;  2BB7 A;  2DFI A;  2GU7 A;  4U76 A;  5D6E A;  3FMR A;  1WBQ A;  3MR1 A;  1W2M A;  2BHC A;  4RGZ 1;  2Q8K A;  2BWT A;  4U75 A;  5FCH A;  4S00 A;  4IF7 A;  1XGO A;  3FM3 A;  2V6C A;  2GU6 A;  5JI6 A;  3IU9 A;  1B59 A;  3MAT A;  4A6W A;  3L24 A;  2NQ6 A;  5CLS A;  4FLL A;  4ZWU A;  3Q6D A;  4R60 A;  1WY2 A;  4IEC A;  1R5H A;  2BWW A;  1WL6 A;  4S01 A;  5CE6 A;  4IKU A;  3FMQ A;  4ZNG A;  4IPA A;  2BN7 A;  4A6V A;  1WLR A;  4U70 A;  1XGN A;  2EA4 A;  2GG2 A;  2BH3 A;  1C24 A;  3TB5 A;  3PEB A;  1YW7 A;  3L7G A;  4B28 A;  4EGE A;  2BWY A;  2EVO A;  5FCF A;  2G6P A;  4U73 A;  4IKS A;  4PNC A;  3CB5 A;  1M35 A;  2BHD A;  1KQ9 A;  5CDE A;  2B3H A;  4MAT A;  2EA2 A;  4IKR A;  2EVM A;  4FUK A;  5E5B A;  3RVA A;  1C27 A;  2P99 A;  3ROR A;  2BHA A;  3PKC A;  1BOA A;  3CTZ A;  3OOO A;  3MX6 A;  2GGC A;  2ADU A;  2ZSG A;  4PV4 A;  2GU4 A;  4OOK A;  3D27 A;  3O5V A;  5D6F A;  1KP0 A;  2GG3 A;  3TAV A;  3PKD A;  4Z7M A;  1QXW A;  2OKN A;  4KM3 A;  2BWV A;  2GG9 A;  1W7V A;  2MAT A;  2Q96 A;  4JUQ A;  2GG8 A;  4U6E A;  4U69 A;  2GA2 A;  2GTX A;  1MAT A;  2GG0 A;  2NQ7 A;  1XGS A;  1C21 A;  5CDL A;  4U6W A;  4FLK A;  2GU5 A;  4FO7 A;  2HOW A;  4QR8 A;  5CNX A;  2IW2 A;  4RZZ A;  2P98 A;  3PKA A;  1Y1N A;  4FLJ A;  2B3K A;  3PKE A;  3IU8 A;  2Q92 A;  3CB6 A;  1R58 A;  2GG5 A;  3S6B A;  1QXZ A;  3BIT A;  1CHM A;  3QOC A;  2Q93 A;  4FLI A;  2BWU A;  4U6C A;  5JHU A;  1JAW A;  1C23 A;  1YW8 A;  3I7M A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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