5CIKA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris in citrate condition
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 133
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cikA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cikA02
4FLLA 1R5GA 2B3KA 1WL6A 3IU7A 3PKEA 1BOAA 3I7MA 1PV9A 1M35A 1QXYA 1R58A 5JFRA 4Z7MA 1C24A 3RVAA 3S6BA 1WBQA 4FUKA 4IDYA 1A16A 1WKMA 4IECA 4IKRA 5D6EA 2GG9A 1WL9A 2EVCA 2OAZA 4FO7A 2GGCA 1N51A 2GA2A 4MATA 2IW2A 1WLRA 1B59A 2BHDA 1XNZA 2B3HA 4QR8A 2GU5A 4U75A 3TAVA 1JAWA 1KP0A 2GG0A 1XGOA 2GG3A 3FMRA 1WY2A 3CB6A 4IKUA 2BWXA 2GG5A 2GG8A 2Q94A 2BHBA 5E2CA 1R5HA 1YW8A 2Q96A 4FLJA 5CE6A 1XGMA 3PKBA 2V3XA 4U1BA 2EA2A 1O0XA 4KM3A 2GU7A 2P99A 3IU9A 3CB5A 1W7VA 4IKTA 3CTZA 4U6JA 4U71A 1C23A 2Q8KA 3FM3A 4B28A 3PEBA 2BH3A 2BN7A 4RZZA 1C21A 2BWUA 5CDEA 3PKDA 2BWSA 3RORA 4OOKA 2GGBA 1XGNA 4FLKA 3MATA 1YW9A 1KQ0A 4JUQA 3Q6DA 2V3YA 2EA4A 2GZ5A 1MATA 3IL0A 2ADUA 2MATA 4PV4A 5JI6A 4FO8A 3OVKA 2GG7A 2EVMA 2BB7A 5FCFA 4ZWUA 4A6WA 4ZNGA 2ZSGA 4EGEA 2B3LA 4U76A 3O5VA 5CDLA 3BITA 5E5BA 1B6AA 3OOOA 4U6WA 4A6VA 4ZWPA 2BWVA 4IF7A 3PKCA 2V6CA 3MX6A 4RZYA 2NQ6A 1CHMA 2Q95A 4S2RP 3D27A 3FMQA 4IPAA 4IU6A 3BIQA 1C27A 4U73A 5CIKA 2BHCA 4RGZ1 2OKNA 1QXZA 5CNXA 2Q93A 3PN9A 4U6CA 5D6FA 5CDVA 1WN1A 3PKAA 4U70A 1YW7A 2G6PA 2BWTA 3MR1A 2BWWA 4HXXA 1BN5A 1QXWA 1YVMA 4ZWOA 3TB5A 1YJ3A 2P98A 2V3ZA 2EVOA 4U6EA 2BHAA 2BWYA 1C22A 3BIPA 5FCHA 1QZYA 2GU6A 2NQ7A 2P9AA 4U6ZA 4S01A 4IKSA 1XGSA 3IU8A 4PNCA 2GG2A 2GTXA 3L24A 4FLIA 1W2MA 3IG4A 4S2TP 3QOCA 4S00A 2Q92A 5JHUA 2GU4A 4FKCA 4R60A 1Y1NA 2DFIA 3L7GA 5CLSA 2HOWA 4U69A 1KQ9A
chains in the Genus database with same CATH superfamily
4FLLA 1R5GA 2B3KA 1WL6A 3IU7A 3PKEA 1BOAA 3I7MA 1PV9A 1M35A 1QXYA 1R58A 5JFRA 4Z7MA 1C24A 3RVAA 3S6BA 1WBQA 4FUKA 4IDYA 1A16A 1WKMA 4IECA 4IKRA 5D6EA 2GG9A 1WL9A 2EVCA 2OAZA 4FO7A 2GGCA 1N51A 2GA2A 4MATA 2IW2A 1WLRA 1B59A 2BHDA 1XNZA 2B3HA 4QR8A 2GU5A 4U75A 3TAVA 1JAWA 1KP0A 2GG0A 1XGOA 2GG3A 3FMRA 1WY2A 3CB6A 4IKUA 2BWXA 2GG5A 2GG8A 2Q94A 2BHBA 5E2CA 1R5HA 1YW8A 2Q96A 4FLJA 5CE6A 1XGMA 3PKBA 2V3XA 4U1BA 2EA2A 1O0XA 4KM3A 2GU7A 2P99A 3IU9A 3CB5A 1W7VA 4IKTA 3CTZA 4U6JA 4U71A 1C23A 2Q8KA 3FM3A 4B28A 3PEBA 2BH3A 2BN7A 4RZZA 1C21A 2BWUA 5CDEA 3PKDA 2BWSA 3RORA 4OOKA 2GGBA 1XGNA 4FLKA 3MATA 1YW9A 1KQ0A 4JUQA 3Q6DA 2V3YA 2EA4A 2GZ5A 1MATA 3IL0A 2ADUA 2MATA 4PV4A 5JI6A 4FO8A 3OVKA 2GG7A 2EVMA 2BB7A 5FCFA 4ZWUA 4A6WA 4ZNGA 2ZSGA 4EGEA 2B3LA 4U76A 3O5VA 5CDLA 3BITA 5E5BA 1B6AA 3OOOA 4U6WA 4A6VA 4ZWPA 2BWVA 4IF7A 3PKCA 2V6CA 3MX6A 4RZYA 2NQ6A 1CHMA 2Q95A 4S2RP 3D27A 3FMQA 4IPAA 4IU6A 3BIQA 1C27A 4U73A 5CIKA 2BHCA 4RGZ1 2OKNA 1QXZA 5CNXA 2Q93A 3PN9A 4U6CA 5D6FA 5CDVA 1WN1A 3PKAA 4U70A 1YW7A 2G6PA 2BWTA 3MR1A 2BWWA 4HXXA 1BN5A 1QXWA 1YVMA 4ZWOA 3TB5A 1YJ3A 2P98A 2V3ZA 2EVOA 4U6EA 2BHAA 2BWYA 1C22A 3BIPA 5FCHA 1QZYA 2GU6A 2NQ7A 2P9AA 4U6ZA 4S01A 4IKSA 1XGSA 3IU8A 4PNCA 2GG2A 2GTXA 3L24A 4FLIA 1W2MA 3IG4A 4S2TP 3QOCA 4S00A 2Q92A 5JHUA 2GU4A 4FKCA 4R60A 1Y1NA 2DFIA 3L7GA 5CLSA 2HOWA 4U69A 1KQ9A
chains in the Genus database with same CATH topology
4FLLA 1R5GA 2B3KA 1WL6A 3IU7A 3PKEA 1BOAA 3I7MA 1PV9A 1M35A 1QXYA 1R58A 5JFRA 4Z7MA 1C24A 3RVAA 3S6BA 1WBQA 4FUKA 4IDYA 1A16A 1WKMA 4IECA 4IKRA 5D6EA 2GG9A 1WL9A 2EVCA 2OAZA 4FO7A 2GGCA 1N51A 2GA2A 4MATA 2IW2A 1WLRA 1B59A 2BHDA 1XNZA 2B3HA 4QR8A 2GU5A 4U75A 3TAVA 1JAWA 1KP0A 2GG0A 1XGOA 2GG3A 3FMRA 1WY2A 3CB6A 4IKUA 2BWXA 2GG5A 2GG8A 2Q94A 2BHBA 5E2CA 1R5HA 1YW8A 2Q96A 4FLJA 5CE6A 1XGMA 3PKBA 2V3XA 4U1BA 2EA2A 1O0XA 4KM3A 2GU7A 2P99A 3IU9A 3CB5A 1W7VA 4IKTA 3CTZA 4U6JA 4U71A 1C23A 2Q8KA 3FM3A 4B28A 3PEBA 2BH3A 2BN7A 4RZZA 1C21A 2BWUA 5CDEA 3PKDA 2BWSA 3RORA 4OOKA 2GGBA 1XGNA 4FLKA 3MATA 1YW9A 1KQ0A 4JUQA 3Q6DA 2V3YA 2EA4A 2GZ5A 1MATA 3IL0A 2ADUA 2MATA 4PV4A 5JI6A 4FO8A 3OVKA 2GG7A 2EVMA 2BB7A 5FCFA 4ZWUA 4A6WA 4ZNGA 2ZSGA 4EGEA 2B3LA 4U76A 3O5VA 5CDLA 3BITA 5E5BA 1B6AA 3OOOA 4U6WA 4A6VA 4ZWPA 2BWVA 4IF7A 3PKCA 2V6CA 3MX6A 4RZYA 2NQ6A 1CHMA 2Q95A 4S2RP 3D27A 3FMQA 4IPAA 4IU6A 3BIQA 1C27A 4U73A 5CIKA 2BHCA 4RGZ1 2OKNA 1QXZA 5CNXA 2Q93A 3PN9A 4U6CA 5D6FA 5CDVA 1WN1A 3PKAA 4U70A 1YW7A 2G6PA 2BWTA 3MR1A 2BWWA 4HXXA 1BN5A 1QXWA 1YVMA 4ZWOA 3TB5A 1YJ3A 2P98A 2V3ZA 2EVOA 4U6EA 2BHAA 2BWYA 1C22A 3BIPA 5FCHA 1QZYA 2GU6A 2NQ7A 2P9AA 4U6ZA 4S01A 4IKSA 1XGSA 3IU8A 4PNCA 2GG2A 2GTXA 3L24A 4FLIA 1W2MA 3IG4A 4S2TP 3QOCA 4S00A 2Q92A 5JHUA 2GU4A 4FKCA 4R60A 1Y1NA 2DFIA 3L7GA 5CLSA 2HOWA 4U69A 1KQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FLL A;  1R5G A;  2B3K A;  1WL6 A;  3IU7 A;  3PKE A;  1BOA A;  3I7M A;  1PV9 A;  1M35 A;  1QXY A;  1R58 A;  5JFR A;  4Z7M A;  1C24 A;  3RVA A;  3S6B A;  1WBQ A;  4FUK A;  4IDY A;  1A16 A;  1WKM A;  4IEC A;  4IKR A;  5D6E A;  2GG9 A;  1WL9 A;  2EVC A;  2OAZ A;  4FO7 A;  2GGC A;  1N51 A;  2GA2 A;  4MAT A;  2IW2 A;  1WLR A;  1B59 A;  2BHD A;  1XNZ A;  2B3H A;  4QR8 A;  2GU5 A;  4U75 A;  3TAV A;  1JAW A;  1KP0 A;  2GG0 A;  1XGO A;  2GG3 A;  3FMR A;  1WY2 A;  3CB6 A;  4IKU A;  2BWX A;  2GG5 A;  2GG8 A;  2Q94 A;  2BHB A;  5E2C A;  1R5H A;  1YW8 A;  2Q96 A;  4FLJ A;  5CE6 A;  1XGM A;  3PKB A;  2V3X A;  4U1B A;  2EA2 A;  1O0X A;  4KM3 A;  2GU7 A;  2P99 A;  3IU9 A;  3CB5 A;  1W7V A;  4IKT A;  3CTZ A;  4U6J A;  4U71 A;  1C23 A;  2Q8K A;  3FM3 A;  4B28 A;  3PEB A;  2BH3 A;  2BN7 A;  4RZZ A;  1C21 A;  2BWU A;  5CDE A;  3PKD A;  2BWS A;  3ROR A;  4OOK A;  2GGB A;  1XGN A;  4FLK A;  3MAT A;  1YW9 A;  1KQ0 A;  4JUQ A;  3Q6D A;  2V3Y A;  2EA4 A;  2GZ5 A;  1MAT A;  3IL0 A;  2ADU A;  2MAT A;  4PV4 A;  5JI6 A;  4FO8 A;  3OVK A;  2GG7 A;  2EVM A;  2BB7 A;  5FCF A;  4ZWU A;  4A6W A;  4ZNG A;  2ZSG A;  4EGE A;  2B3L A;  4U76 A;  3O5V A;  5CDL A;  3BIT A;  5E5B A;  1B6A A;  3OOO A;  4U6W A;  4A6V A;  4ZWP A;  2BWV A;  4IF7 A;  3PKC A;  2V6C A;  3MX6 A;  4RZY A;  2NQ6 A;  1CHM A;  2Q95 A;  4S2R P;  3D27 A;  3FMQ A;  4IPA A;  4IU6 A;  3BIQ A;  1C27 A;  4U73 A;  5CIK A;  2BHC A;  4RGZ 1;  2OKN A;  1QXZ A;  5CNX A;  2Q93 A;  3PN9 A;  4U6C A;  5D6F A;  5CDV A;  1WN1 A;  3PKA A;  4U70 A;  1YW7 A;  2G6P A;  2BWT A;  3MR1 A;  2BWW A;  4HXX A;  1BN5 A;  1QXW A;  1YVM A;  4ZWO A;  3TB5 A;  1YJ3 A;  2P98 A;  2V3Z A;  2EVO A;  4U6E A;  2BHA A;  2BWY A;  1C22 A;  3BIP A;  5FCH A;  1QZY A;  2GU6 A;  2NQ7 A;  2P9A A;  4U6Z A;  4S01 A;  4IKS A;  1XGS A;  3IU8 A;  4PNC A;  2GG2 A;  2GTX A;  3L24 A;  4FLI A;  1W2M A;  3IG4 A;  4S2T P;  3QOC A;  4S00 A;  2Q92 A;  5JHU A;  2GU4 A;  4FKC A;  4R60 A;  1Y1N A;  2DFI A;  3L7G A;  5CLS A;  2HOW A;  4U69 A;  1KQ9 A; 
#chains in the Genus database with same CATH topology
 4FLL A;  1R5G A;  2B3K A;  1WL6 A;  3IU7 A;  3PKE A;  1BOA A;  3I7M A;  1PV9 A;  1M35 A;  1QXY A;  1R58 A;  5JFR A;  4Z7M A;  1C24 A;  3RVA A;  3S6B A;  1WBQ A;  4FUK A;  4IDY A;  1A16 A;  1WKM A;  4IEC A;  4IKR A;  5D6E A;  2GG9 A;  1WL9 A;  2EVC A;  2OAZ A;  4FO7 A;  2GGC A;  1N51 A;  2GA2 A;  4MAT A;  2IW2 A;  1WLR A;  1B59 A;  2BHD A;  1XNZ A;  2B3H A;  4QR8 A;  2GU5 A;  4U75 A;  3TAV A;  1JAW A;  1KP0 A;  2GG0 A;  1XGO A;  2GG3 A;  3FMR A;  1WY2 A;  3CB6 A;  4IKU A;  2BWX A;  2GG5 A;  2GG8 A;  2Q94 A;  2BHB A;  5E2C A;  1R5H A;  1YW8 A;  2Q96 A;  4FLJ A;  5CE6 A;  1XGM A;  3PKB A;  2V3X A;  4U1B A;  2EA2 A;  1O0X A;  4KM3 A;  2GU7 A;  2P99 A;  3IU9 A;  3CB5 A;  1W7V A;  4IKT A;  3CTZ A;  4U6J A;  4U71 A;  1C23 A;  2Q8K A;  3FM3 A;  4B28 A;  3PEB A;  2BH3 A;  2BN7 A;  4RZZ A;  1C21 A;  2BWU A;  5CDE A;  3PKD A;  2BWS A;  3ROR A;  4OOK A;  2GGB A;  1XGN A;  4FLK A;  3MAT A;  1YW9 A;  1KQ0 A;  4JUQ A;  3Q6D A;  2V3Y A;  2EA4 A;  2GZ5 A;  1MAT A;  3IL0 A;  2ADU A;  2MAT A;  4PV4 A;  5JI6 A;  4FO8 A;  3OVK A;  2GG7 A;  2EVM A;  2BB7 A;  5FCF A;  4ZWU A;  4A6W A;  4ZNG A;  2ZSG A;  4EGE A;  2B3L A;  4U76 A;  3O5V A;  5CDL A;  3BIT A;  5E5B A;  1B6A A;  3OOO A;  4U6W A;  4A6V A;  4ZWP A;  2BWV A;  4IF7 A;  3PKC A;  2V6C A;  3MX6 A;  4RZY A;  2NQ6 A;  1CHM A;  2Q95 A;  4S2R P;  3D27 A;  3FMQ A;  4IPA A;  4IU6 A;  3BIQ A;  1C27 A;  4U73 A;  5CIK A;  2BHC A;  4RGZ 1;  2OKN A;  1QXZ A;  5CNX A;  2Q93 A;  3PN9 A;  4U6C A;  5D6F A;  5CDV A;  1WN1 A;  3PKA A;  4U70 A;  1YW7 A;  2G6P A;  2BWT A;  3MR1 A;  2BWW A;  4HXX A;  1BN5 A;  1QXW A;  1YVM A;  4ZWO A;  3TB5 A;  1YJ3 A;  2P98 A;  2V3Z A;  2EVO A;  4U6E A;  2BHA A;  2BWY A;  1C22 A;  3BIP A;  5FCH A;  1QZY A;  2GU6 A;  2NQ7 A;  2P9A A;  4U6Z A;  4S01 A;  4IKS A;  1XGS A;  3IU8 A;  4PNC A;  2GG2 A;  2GTX A;  3L24 A;  4FLI A;  1W2M A;  3IG4 A;  4S2T P;  3QOC A;  4S00 A;  2Q92 A;  5JHU A;  2GU4 A;  4FKC A;  4R60 A;  1Y1N A;  2DFI A;  3L7G A;  5CLS A;  2HOW A;  4U69 A;  1KQ9 A; 
#chains in the Genus database with same CATH homology
 4FLL A;  1R5G A;  2B3K A;  1WL6 A;  3IU7 A;  3PKE A;  1BOA A;  3I7M A;  1PV9 A;  1M35 A;  1QXY A;  1R58 A;  5JFR A;  4Z7M A;  1C24 A;  3RVA A;  3S6B A;  1WBQ A;  4FUK A;  4IDY A;  1A16 A;  1WKM A;  4IEC A;  4IKR A;  5D6E A;  2GG9 A;  1WL9 A;  2EVC A;  2OAZ A;  4FO7 A;  2GGC A;  1N51 A;  2GA2 A;  4MAT A;  2IW2 A;  1WLR A;  1B59 A;  2BHD A;  1XNZ A;  2B3H A;  4QR8 A;  2GU5 A;  4U75 A;  3TAV A;  1JAW A;  1KP0 A;  2GG0 A;  1XGO A;  2GG3 A;  3FMR A;  1WY2 A;  3CB6 A;  4IKU A;  2BWX A;  2GG5 A;  2GG8 A;  2Q94 A;  2BHB A;  5E2C A;  1R5H A;  1YW8 A;  2Q96 A;  4FLJ A;  5CE6 A;  1XGM A;  3PKB A;  2V3X A;  4U1B A;  2EA2 A;  1O0X A;  4KM3 A;  2GU7 A;  2P99 A;  3IU9 A;  3CB5 A;  1W7V A;  4IKT A;  3CTZ A;  4U6J A;  4U71 A;  1C23 A;  2Q8K A;  3FM3 A;  4B28 A;  3PEB A;  2BH3 A;  2BN7 A;  4RZZ A;  1C21 A;  2BWU A;  5CDE A;  3PKD A;  2BWS A;  3ROR A;  4OOK A;  2GGB A;  1XGN A;  4FLK A;  3MAT A;  1YW9 A;  1KQ0 A;  4JUQ A;  3Q6D A;  2V3Y A;  2EA4 A;  2GZ5 A;  1MAT A;  3IL0 A;  2ADU A;  2MAT A;  4PV4 A;  5JI6 A;  4FO8 A;  3OVK A;  2GG7 A;  2EVM A;  2BB7 A;  5FCF A;  4ZWU A;  4A6W A;  4ZNG A;  2ZSG A;  4EGE A;  2B3L A;  4U76 A;  3O5V A;  5CDL A;  3BIT A;  5E5B A;  1B6A A;  3OOO A;  4U6W A;  4A6V A;  4ZWP A;  2BWV A;  4IF7 A;  3PKC A;  2V6C A;  3MX6 A;  4RZY A;  2NQ6 A;  1CHM A;  2Q95 A;  4S2R P;  3D27 A;  3FMQ A;  4IPA A;  4IU6 A;  3BIQ A;  1C27 A;  4U73 A;  5CIK A;  2BHC A;  4RGZ 1;  2OKN A;  1QXZ A;  5CNX A;  2Q93 A;  3PN9 A;  4U6C A;  5D6F A;  5CDV A;  1WN1 A;  3PKA A;  4U70 A;  1YW7 A;  2G6P A;  2BWT A;  3MR1 A;  2BWW A;  4HXX A;  1BN5 A;  1QXW A;  1YVM A;  4ZWO A;  3TB5 A;  1YJ3 A;  2P98 A;  2V3Z A;  2EVO A;  4U6E A;  2BHA A;  2BWY A;  1C22 A;  3BIP A;  5FCH A;  1QZY A;  2GU6 A;  2NQ7 A;  2P9A A;  4U6Z A;  4S01 A;  4IKS A;  1XGS A;  3IU8 A;  4PNC A;  2GG2 A;  2GTX A;  3L24 A;  4FLI A;  1W2M A;  3IG4 A;  4S2T P;  3QOC A;  4S00 A;  2Q92 A;  5JHU A;  2GU4 A;  4FKC A;  4R60 A;  1Y1N A;  2DFI A;  3L7G A;  5CLS A;  2HOW A;  4U69 A;  1KQ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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