5CIKA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris in citrate condition
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
397
structure length
397
Chain Sequence
b'TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
total genus 133
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cikA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cikA02
1PV9A 2EVCA 1YVMA 5JFRA 2BWUA 3CTZA 3PKDA 2BWWA 2P9AA 4JUQA 2BHAA 5D6FA 1C23A 2GG9A 4S2TP 4IKTA 3PKAA 2GG0A 3PEBA 3O5VA 4FLLA 2G6PA 1QXYA 1CHMA 5CIKA 3CB5A 1YW9A 1BN5A 4EGEA 2Q94A 2GG3A 3PKBA 4MATA 4FUKA 4IKUA 4OOKA 3TAVA 4S01A 3I7MA 3PKEA 2Q93A 3BIQA 1XGSA 4U6WA 3S6BA 2V3ZA 1WN1A 3Q6DA 2EVOA 1B59A 4U6ZA 5CDEA 1QXZA 4PNCA 4A6VA 1WKMA 2B3HA 2EVMA 4KM3A 4S00A 2GGCA 2GTXA 2V3YA 2BH3A 1KQ0A 4IECA 2GU7A 4ZNGA 5CDLA 1R5HA 2BWSA 4FKCA 2BWTA 3CB6A 5CE6A 2B3KA 2GZ5A 4ZWPA 4A6WA 3MATA 2V3XA 1O0XA 1XNZA 1C27A 1WL9A 2BWXA 2GU4A 3FMRA 2GG2A 4U73A 1XGNA 1WBQA 2P98A 1M35A 3MR1A 4RGZ1 3RVAA 4RZZA 3FMQA 2BWYA 4FO7A 4HXXA 2BN7A 1YW7A 1BOAA 5E5BA 2GG7A 1B6AA 4U76A 1KP0A 5E2CA 5JHUA 1C22A 5CNXA 1MATA 4U69A 1QXWA 2Q92A 3MX6A 4S2RP 4U70A 2B3LA 3OOOA 2IW2A 4RZYA 2GA2A 2BWVA 4IF7A 3OVKA 1Y1NA 5JI6A 4Z7MA 2DFIA 2NQ7A 1R58A 1A16A 4PV4A 2BB7A 2Q96A 2BHCA 4B28A 4IDYA 3L24A 2ZSGA 2P99A 3IU7A 1QZYA 4FLIA 2V6CA 4QR8A 1YW8A 3PN9A 2EA4A 4U6CA 4U1BA 2GU5A 2NQ6A 1W2MA 3TB5A 4ZWOA 1WY2A 1WLRA 5CDVA 2BHBA 4IKRA 3RORA 4U6EA 2OKNA 1W7VA 3IL0A 3BITA 2MATA 3IU8A 2EA2A 3FM3A 3L7GA 2ADUA 3IU9A 2GG5A 2Q8KA 4R60A 3D27A 2HOWA 5FCFA 1C21A 2GGBA 1N51A 1KQ9A 2OAZA 4FLKA 2Q95A 5FCHA 4FO8A 4IKSA 4IU6A 1JAWA 1C24A 4U75A 3BIPA 2BHDA 3QOCA 1YJ3A 4U6JA 4FLJA 4IPAA 1XGMA 1XGOA 5D6EA 4ZWUA 4U71A 3IG4A 3PKCA 1WL6A 5CLSA 1R5GA 2GU6A 2GG8A
chains in the Genus database with same CATH superfamily
1PV9A 2EVCA 1YVMA 5JFRA 2BWUA 3CTZA 3PKDA 2BWWA 2P9AA 4JUQA 2BHAA 5D6FA 1C23A 2GG9A 4S2TP 4IKTA 3PKAA 2GG0A 3PEBA 3O5VA 4FLLA 2G6PA 1QXYA 1CHMA 5CIKA 3CB5A 1YW9A 1BN5A 4EGEA 2Q94A 2GG3A 3PKBA 4MATA 4FUKA 4IKUA 4OOKA 3TAVA 4S01A 3I7MA 3PKEA 2Q93A 3BIQA 1XGSA 4U6WA 3S6BA 2V3ZA 1WN1A 3Q6DA 2EVOA 1B59A 4U6ZA 5CDEA 1QXZA 4PNCA 4A6VA 1WKMA 2B3HA 2EVMA 4KM3A 4S00A 2GGCA 2GTXA 2V3YA 2BH3A 1KQ0A 4IECA 2GU7A 4ZNGA 5CDLA 1R5HA 2BWSA 4FKCA 2BWTA 3CB6A 5CE6A 2B3KA 2GZ5A 4ZWPA 4A6WA 3MATA 2V3XA 1O0XA 1XNZA 1C27A 1WL9A 2BWXA 2GU4A 3FMRA 2GG2A 4U73A 1XGNA 1WBQA 2P98A 1M35A 3MR1A 4RGZ1 3RVAA 4RZZA 3FMQA 2BWYA 4FO7A 4HXXA 2BN7A 1YW7A 1BOAA 5E5BA 2GG7A 1B6AA 4U76A 1KP0A 5E2CA 5JHUA 1C22A 5CNXA 1MATA 4U69A 1QXWA 2Q92A 3MX6A 4S2RP 4U70A 2B3LA 3OOOA 2IW2A 4RZYA 2GA2A 2BWVA 4IF7A 3OVKA 1Y1NA 5JI6A 4Z7MA 2DFIA 2NQ7A 1R58A 1A16A 4PV4A 2BB7A 2Q96A 2BHCA 4B28A 4IDYA 3L24A 2ZSGA 2P99A 3IU7A 1QZYA 4FLIA 2V6CA 4QR8A 1YW8A 3PN9A 2EA4A 4U6CA 4U1BA 2GU5A 2NQ6A 1W2MA 3TB5A 4ZWOA 1WY2A 1WLRA 5CDVA 2BHBA 4IKRA 3RORA 4U6EA 2OKNA 1W7VA 3IL0A 3BITA 2MATA 3IU8A 2EA2A 3FM3A 3L7GA 2ADUA 3IU9A 2GG5A 2Q8KA 4R60A 3D27A 2HOWA 5FCFA 1C21A 2GGBA 1N51A 1KQ9A 2OAZA 4FLKA 2Q95A 5FCHA 4FO8A 4IKSA 4IU6A 1JAWA 1C24A 4U75A 3BIPA 2BHDA 3QOCA 1YJ3A 4U6JA 4FLJA 4IPAA 1XGMA 1XGOA 5D6EA 4ZWUA 4U71A 3IG4A 3PKCA 1WL6A 5CLSA 1R5GA 2GU6A 2GG8A
chains in the Genus database with same CATH topology
1PV9A 2EVCA 1YVMA 5JFRA 2BWUA 3CTZA 3PKDA 2BWWA 2P9AA 4JUQA 2BHAA 5D6FA 1C23A 2GG9A 4S2TP 4IKTA 3PKAA 2GG0A 3PEBA 3O5VA 4FLLA 2G6PA 1QXYA 1CHMA 5CIKA 3CB5A 1YW9A 1BN5A 4EGEA 2Q94A 2GG3A 3PKBA 4MATA 4FUKA 4IKUA 4OOKA 3TAVA 4S01A 3I7MA 3PKEA 2Q93A 3BIQA 1XGSA 4U6WA 3S6BA 2V3ZA 1WN1A 3Q6DA 2EVOA 1B59A 4U6ZA 5CDEA 1QXZA 4PNCA 4A6VA 1WKMA 2B3HA 2EVMA 4KM3A 4S00A 2GGCA 2GTXA 2V3YA 2BH3A 1KQ0A 4IECA 2GU7A 4ZNGA 5CDLA 1R5HA 2BWSA 4FKCA 2BWTA 3CB6A 5CE6A 2B3KA 2GZ5A 4ZWPA 4A6WA 3MATA 2V3XA 1O0XA 1XNZA 1C27A 1WL9A 2BWXA 2GU4A 3FMRA 2GG2A 4U73A 1XGNA 1WBQA 2P98A 1M35A 3MR1A 4RGZ1 3RVAA 4RZZA 3FMQA 2BWYA 4FO7A 4HXXA 2BN7A 1YW7A 1BOAA 5E5BA 2GG7A 1B6AA 4U76A 1KP0A 5E2CA 5JHUA 1C22A 5CNXA 1MATA 4U69A 1QXWA 2Q92A 3MX6A 4S2RP 4U70A 2B3LA 3OOOA 2IW2A 4RZYA 2GA2A 2BWVA 4IF7A 3OVKA 1Y1NA 5JI6A 4Z7MA 2DFIA 2NQ7A 1R58A 1A16A 4PV4A 2BB7A 2Q96A 2BHCA 4B28A 4IDYA 3L24A 2ZSGA 2P99A 3IU7A 1QZYA 4FLIA 2V6CA 4QR8A 1YW8A 3PN9A 2EA4A 4U6CA 4U1BA 2GU5A 2NQ6A 1W2MA 3TB5A 4ZWOA 1WY2A 1WLRA 5CDVA 2BHBA 4IKRA 3RORA 4U6EA 2OKNA 1W7VA 3IL0A 3BITA 2MATA 3IU8A 2EA2A 3FM3A 3L7GA 2ADUA 3IU9A 2GG5A 2Q8KA 4R60A 3D27A 2HOWA 5FCFA 1C21A 2GGBA 1N51A 1KQ9A 2OAZA 4FLKA 2Q95A 5FCHA 4FO8A 4IKSA 4IU6A 1JAWA 1C24A 4U75A 3BIPA 2BHDA 3QOCA 1YJ3A 4U6JA 4FLJA 4IPAA 1XGMA 1XGOA 5D6EA 4ZWUA 4U71A 3IG4A 3PKCA 1WL6A 5CLSA 1R5GA 2GU6A 2GG8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PV9 A;  2EVC A;  1YVM A;  5JFR A;  2BWU A;  3CTZ A;  3PKD A;  2BWW A;  2P9A A;  4JUQ A;  2BHA A;  5D6F A;  1C23 A;  2GG9 A;  4S2T P;  4IKT A;  3PKA A;  2GG0 A;  3PEB A;  3O5V A;  4FLL A;  2G6P A;  1QXY A;  1CHM A;  5CIK A;  3CB5 A;  1YW9 A;  1BN5 A;  4EGE A;  2Q94 A;  2GG3 A;  3PKB A;  4MAT A;  4FUK A;  4IKU A;  4OOK A;  3TAV A;  4S01 A;  3I7M A;  3PKE A;  2Q93 A;  3BIQ A;  1XGS A;  4U6W A;  3S6B A;  2V3Z A;  1WN1 A;  3Q6D A;  2EVO A;  1B59 A;  4U6Z A;  5CDE A;  1QXZ A;  4PNC A;  4A6V A;  1WKM A;  2B3H A;  2EVM A;  4KM3 A;  4S00 A;  2GGC A;  2GTX A;  2V3Y A;  2BH3 A;  1KQ0 A;  4IEC A;  2GU7 A;  4ZNG A;  5CDL A;  1R5H A;  2BWS A;  4FKC A;  2BWT A;  3CB6 A;  5CE6 A;  2B3K A;  2GZ5 A;  4ZWP A;  4A6W A;  3MAT A;  2V3X A;  1O0X A;  1XNZ A;  1C27 A;  1WL9 A;  2BWX A;  2GU4 A;  3FMR A;  2GG2 A;  4U73 A;  1XGN A;  1WBQ A;  2P98 A;  1M35 A;  3MR1 A;  4RGZ 1;  3RVA A;  4RZZ A;  3FMQ A;  2BWY A;  4FO7 A;  4HXX A;  2BN7 A;  1YW7 A;  1BOA A;  5E5B A;  2GG7 A;  1B6A A;  4U76 A;  1KP0 A;  5E2C A;  5JHU A;  1C22 A;  5CNX A;  1MAT A;  4U69 A;  1QXW A;  2Q92 A;  3MX6 A;  4S2R P;  4U70 A;  2B3L A;  3OOO A;  2IW2 A;  4RZY A;  2GA2 A;  2BWV A;  4IF7 A;  3OVK A;  1Y1N A;  5JI6 A;  4Z7M A;  2DFI A;  2NQ7 A;  1R58 A;  1A16 A;  4PV4 A;  2BB7 A;  2Q96 A;  2BHC A;  4B28 A;  4IDY A;  3L24 A;  2ZSG A;  2P99 A;  3IU7 A;  1QZY A;  4FLI A;  2V6C A;  4QR8 A;  1YW8 A;  3PN9 A;  2EA4 A;  4U6C A;  4U1B A;  2GU5 A;  2NQ6 A;  1W2M A;  3TB5 A;  4ZWO A;  1WY2 A;  1WLR A;  5CDV A;  2BHB A;  4IKR A;  3ROR A;  4U6E A;  2OKN A;  1W7V A;  3IL0 A;  3BIT A;  2MAT A;  3IU8 A;  2EA2 A;  3FM3 A;  3L7G A;  2ADU A;  3IU9 A;  2GG5 A;  2Q8K A;  4R60 A;  3D27 A;  2HOW A;  5FCF A;  1C21 A;  2GGB A;  1N51 A;  1KQ9 A;  2OAZ A;  4FLK A;  2Q95 A;  5FCH A;  4FO8 A;  4IKS A;  4IU6 A;  1JAW A;  1C24 A;  4U75 A;  3BIP A;  2BHD A;  3QOC A;  1YJ3 A;  4U6J A;  4FLJ A;  4IPA A;  1XGM A;  1XGO A;  5D6E A;  4ZWU A;  4U71 A;  3IG4 A;  3PKC A;  1WL6 A;  5CLS A;  1R5G A;  2GU6 A;  2GG8 A; 
#chains in the Genus database with same CATH topology
 1PV9 A;  2EVC A;  1YVM A;  5JFR A;  2BWU A;  3CTZ A;  3PKD A;  2BWW A;  2P9A A;  4JUQ A;  2BHA A;  5D6F A;  1C23 A;  2GG9 A;  4S2T P;  4IKT A;  3PKA A;  2GG0 A;  3PEB A;  3O5V A;  4FLL A;  2G6P A;  1QXY A;  1CHM A;  5CIK A;  3CB5 A;  1YW9 A;  1BN5 A;  4EGE A;  2Q94 A;  2GG3 A;  3PKB A;  4MAT A;  4FUK A;  4IKU A;  4OOK A;  3TAV A;  4S01 A;  3I7M A;  3PKE A;  2Q93 A;  3BIQ A;  1XGS A;  4U6W A;  3S6B A;  2V3Z A;  1WN1 A;  3Q6D A;  2EVO A;  1B59 A;  4U6Z A;  5CDE A;  1QXZ A;  4PNC A;  4A6V A;  1WKM A;  2B3H A;  2EVM A;  4KM3 A;  4S00 A;  2GGC A;  2GTX A;  2V3Y A;  2BH3 A;  1KQ0 A;  4IEC A;  2GU7 A;  4ZNG A;  5CDL A;  1R5H A;  2BWS A;  4FKC A;  2BWT A;  3CB6 A;  5CE6 A;  2B3K A;  2GZ5 A;  4ZWP A;  4A6W A;  3MAT A;  2V3X A;  1O0X A;  1XNZ A;  1C27 A;  1WL9 A;  2BWX A;  2GU4 A;  3FMR A;  2GG2 A;  4U73 A;  1XGN A;  1WBQ A;  2P98 A;  1M35 A;  3MR1 A;  4RGZ 1;  3RVA A;  4RZZ A;  3FMQ A;  2BWY A;  4FO7 A;  4HXX A;  2BN7 A;  1YW7 A;  1BOA A;  5E5B A;  2GG7 A;  1B6A A;  4U76 A;  1KP0 A;  5E2C A;  5JHU A;  1C22 A;  5CNX A;  1MAT A;  4U69 A;  1QXW A;  2Q92 A;  3MX6 A;  4S2R P;  4U70 A;  2B3L A;  3OOO A;  2IW2 A;  4RZY A;  2GA2 A;  2BWV A;  4IF7 A;  3OVK A;  1Y1N A;  5JI6 A;  4Z7M A;  2DFI A;  2NQ7 A;  1R58 A;  1A16 A;  4PV4 A;  2BB7 A;  2Q96 A;  2BHC A;  4B28 A;  4IDY A;  3L24 A;  2ZSG A;  2P99 A;  3IU7 A;  1QZY A;  4FLI A;  2V6C A;  4QR8 A;  1YW8 A;  3PN9 A;  2EA4 A;  4U6C A;  4U1B A;  2GU5 A;  2NQ6 A;  1W2M A;  3TB5 A;  4ZWO A;  1WY2 A;  1WLR A;  5CDV A;  2BHB A;  4IKR A;  3ROR A;  4U6E A;  2OKN A;  1W7V A;  3IL0 A;  3BIT A;  2MAT A;  3IU8 A;  2EA2 A;  3FM3 A;  3L7G A;  2ADU A;  3IU9 A;  2GG5 A;  2Q8K A;  4R60 A;  3D27 A;  2HOW A;  5FCF A;  1C21 A;  2GGB A;  1N51 A;  1KQ9 A;  2OAZ A;  4FLK A;  2Q95 A;  5FCH A;  4FO8 A;  4IKS A;  4IU6 A;  1JAW A;  1C24 A;  4U75 A;  3BIP A;  2BHD A;  3QOC A;  1YJ3 A;  4U6J A;  4FLJ A;  4IPA A;  1XGM A;  1XGO A;  5D6E A;  4ZWU A;  4U71 A;  3IG4 A;  3PKC A;  1WL6 A;  5CLS A;  1R5G A;  2GU6 A;  2GG8 A; 
#chains in the Genus database with same CATH homology
 1PV9 A;  2EVC A;  1YVM A;  5JFR A;  2BWU A;  3CTZ A;  3PKD A;  2BWW A;  2P9A A;  4JUQ A;  2BHA A;  5D6F A;  1C23 A;  2GG9 A;  4S2T P;  4IKT A;  3PKA A;  2GG0 A;  3PEB A;  3O5V A;  4FLL A;  2G6P A;  1QXY A;  1CHM A;  5CIK A;  3CB5 A;  1YW9 A;  1BN5 A;  4EGE A;  2Q94 A;  2GG3 A;  3PKB A;  4MAT A;  4FUK A;  4IKU A;  4OOK A;  3TAV A;  4S01 A;  3I7M A;  3PKE A;  2Q93 A;  3BIQ A;  1XGS A;  4U6W A;  3S6B A;  2V3Z A;  1WN1 A;  3Q6D A;  2EVO A;  1B59 A;  4U6Z A;  5CDE A;  1QXZ A;  4PNC A;  4A6V A;  1WKM A;  2B3H A;  2EVM A;  4KM3 A;  4S00 A;  2GGC A;  2GTX A;  2V3Y A;  2BH3 A;  1KQ0 A;  4IEC A;  2GU7 A;  4ZNG A;  5CDL A;  1R5H A;  2BWS A;  4FKC A;  2BWT A;  3CB6 A;  5CE6 A;  2B3K A;  2GZ5 A;  4ZWP A;  4A6W A;  3MAT A;  2V3X A;  1O0X A;  1XNZ A;  1C27 A;  1WL9 A;  2BWX A;  2GU4 A;  3FMR A;  2GG2 A;  4U73 A;  1XGN A;  1WBQ A;  2P98 A;  1M35 A;  3MR1 A;  4RGZ 1;  3RVA A;  4RZZ A;  3FMQ A;  2BWY A;  4FO7 A;  4HXX A;  2BN7 A;  1YW7 A;  1BOA A;  5E5B A;  2GG7 A;  1B6A A;  4U76 A;  1KP0 A;  5E2C A;  5JHU A;  1C22 A;  5CNX A;  1MAT A;  4U69 A;  1QXW A;  2Q92 A;  3MX6 A;  4S2R P;  4U70 A;  2B3L A;  3OOO A;  2IW2 A;  4RZY A;  2GA2 A;  2BWV A;  4IF7 A;  3OVK A;  1Y1N A;  5JI6 A;  4Z7M A;  2DFI A;  2NQ7 A;  1R58 A;  1A16 A;  4PV4 A;  2BB7 A;  2Q96 A;  2BHC A;  4B28 A;  4IDY A;  3L24 A;  2ZSG A;  2P99 A;  3IU7 A;  1QZY A;  4FLI A;  2V6C A;  4QR8 A;  1YW8 A;  3PN9 A;  2EA4 A;  4U6C A;  4U1B A;  2GU5 A;  2NQ6 A;  1W2M A;  3TB5 A;  4ZWO A;  1WY2 A;  1WLR A;  5CDV A;  2BHB A;  4IKR A;  3ROR A;  4U6E A;  2OKN A;  1W7V A;  3IL0 A;  3BIT A;  2MAT A;  3IU8 A;  2EA2 A;  3FM3 A;  3L7G A;  2ADU A;  3IU9 A;  2GG5 A;  2Q8K A;  4R60 A;  3D27 A;  2HOW A;  5FCF A;  1C21 A;  2GGB A;  1N51 A;  1KQ9 A;  2OAZ A;  4FLK A;  2Q95 A;  5FCH A;  4FO8 A;  4IKS A;  4IU6 A;  1JAW A;  1C24 A;  4U75 A;  3BIP A;  2BHD A;  3QOC A;  1YJ3 A;  4U6J A;  4FLJ A;  4IPA A;  1XGM A;  1XGO A;  5D6E A;  4ZWU A;  4U71 A;  3IG4 A;  3PKC A;  1WL6 A;  5CLS A;  1R5G A;  2GU6 A;  2GG8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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