5CIKA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris in citrate condition
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
397
structure length
397
Chain Sequence
b'TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
molecule tags Hydrolase
source organism Xanthomonas campestris pv. campestris str. atcc 33913
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
rcsb
total genus 133
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cikA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cikA02
1WL6A 4R60A 4RGZ1 3IU8A 2BHDA 3RVAA 3L7GA 2B3LA 2GG7A 1WL9A 1XGMA 4S2RP 4IKSA 1KQ0A 4RZYA 2GU7A 1WN1A 1XGNA 4U70A 2GTXA 2V3YA 2IW2A 3L24A 2NQ7A 3FMQA 3TB5A 1N51A 2BWUA 4IPAA 5JI6A 3MX6A 5JHUA 3IU9A 3I7MA 1C22A 1YJ3A 4JUQA 4IECA 1XGSA 5D6EA 1R58A 4PV4A 1QXZA 2GGCA 4IDYA 1YW9A 4OOKA 4U71A 1C27A 4MATA 3OOOA 1QZYA 1B6AA 3PN9A 2GG3A 5E5BA 4QR8A 2BH3A 3IG4A 4B28A 5CDVA 2GG9A 4FUKA 3CB5A 4U75A 5CDEA 2V3ZA 1O0XA 2BHBA 5CLSA 5JFRA 2GZ5A 2B3HA 1YVMA 3D27A 1A16A 3PEBA 4S00A 2GA2A 2P98A 2BWYA 3OVKA 4RZZA 2GG2A 2GU4A 4U6EA 5CDLA 4IKTA 4IU6A 1QXWA 3BIQA 2GGBA 2GU6A 3BIPA 4U69A 4FKCA 3TAVA 1PV9A 1XGOA 5D6FA 4ZWUA 2BN7A 2BWSA 1C23A 4Z7MA 2BWTA 3S6BA 2Q92A 1WKMA 2V3XA 3FMRA 2Q94A 4FLJA 2OAZA 4HXXA 4U6WA 2BHAA 3Q6DA 1BN5A 1YW8A 5FCFA 2EVCA 1Y1NA 2EVOA 2MATA 2Q93A 2BWXA 3PKEA 2GG0A 2EVMA 3PKBA 4S01A 4FO7A 3O5VA 2G6PA 3MATA 2HOWA 3FM3A 1WY2A 2GG5A 1C24A 3IU7A 1R5GA 4S2TP 4U1BA 5CNXA 1W2MA 4IKRA 3PKDA 2GU5A 1XNZA 4U6CA 4FLKA 5CIKA 2OKNA 2EA2A 2BWWA 2EA4A 4ZNGA 1W7VA 4IKUA 3QOCA 2ADUA 3MR1A 4U6ZA 2Q96A 1R5HA 4FLLA 3RORA 4ZWPA 4U6JA 1QXYA 2V6CA 4U76A 4FLIA 4ZWOA 4KM3A 1M35A 3PKCA 2ZSGA 3CTZA 1KQ9A 4A6VA 2NQ6A 4IF7A 3PKAA 1C21A 1WBQA 1YW7A 2DFIA 1MATA 2Q8KA 1JAWA 1KP0A 1CHMA 2P9AA 4PNCA 3IL0A 1BOAA 4EGEA 3BITA 4U73A 1B59A 1WLRA 2B3KA 2BB7A 3CB6A 2GG8A 4FO8A 4A6WA 5CE6A 2P99A 5E2CA 2BWVA 2Q95A 2BHCA 5FCHA
chains in the Genus database with same CATH superfamily
1WL6A 4R60A 4RGZ1 3IU8A 2BHDA 3RVAA 3L7GA 2B3LA 2GG7A 1WL9A 1XGMA 4S2RP 4IKSA 1KQ0A 4RZYA 2GU7A 1WN1A 1XGNA 4U70A 2GTXA 2V3YA 2IW2A 3L24A 2NQ7A 3FMQA 3TB5A 1N51A 2BWUA 4IPAA 5JI6A 3MX6A 5JHUA 3IU9A 3I7MA 1C22A 1YJ3A 4JUQA 4IECA 1XGSA 5D6EA 1R58A 4PV4A 1QXZA 2GGCA 4IDYA 1YW9A 4OOKA 4U71A 1C27A 4MATA 3OOOA 1QZYA 1B6AA 3PN9A 2GG3A 5E5BA 4QR8A 2BH3A 3IG4A 4B28A 5CDVA 2GG9A 4FUKA 3CB5A 4U75A 5CDEA 2V3ZA 1O0XA 2BHBA 5CLSA 5JFRA 2GZ5A 2B3HA 1YVMA 3D27A 1A16A 3PEBA 4S00A 2GA2A 2P98A 2BWYA 3OVKA 4RZZA 2GG2A 2GU4A 4U6EA 5CDLA 4IKTA 4IU6A 1QXWA 3BIQA 2GGBA 2GU6A 3BIPA 4U69A 4FKCA 3TAVA 1PV9A 1XGOA 5D6FA 4ZWUA 2BN7A 2BWSA 1C23A 4Z7MA 2BWTA 3S6BA 2Q92A 1WKMA 2V3XA 3FMRA 2Q94A 4FLJA 2OAZA 4HXXA 4U6WA 2BHAA 3Q6DA 1BN5A 1YW8A 5FCFA 2EVCA 1Y1NA 2EVOA 2MATA 2Q93A 2BWXA 3PKEA 2GG0A 2EVMA 3PKBA 4S01A 4FO7A 3O5VA 2G6PA 3MATA 2HOWA 3FM3A 1WY2A 2GG5A 1C24A 3IU7A 1R5GA 4S2TP 4U1BA 5CNXA 1W2MA 4IKRA 3PKDA 2GU5A 1XNZA 4U6CA 4FLKA 5CIKA 2OKNA 2EA2A 2BWWA 2EA4A 4ZNGA 1W7VA 4IKUA 3QOCA 2ADUA 3MR1A 4U6ZA 2Q96A 1R5HA 4FLLA 3RORA 4ZWPA 4U6JA 1QXYA 2V6CA 4U76A 4FLIA 4ZWOA 4KM3A 1M35A 3PKCA 2ZSGA 3CTZA 1KQ9A 4A6VA 2NQ6A 4IF7A 3PKAA 1C21A 1WBQA 1YW7A 2DFIA 1MATA 2Q8KA 1JAWA 1KP0A 1CHMA 2P9AA 4PNCA 3IL0A 1BOAA 4EGEA 3BITA 4U73A 1B59A 1WLRA 2B3KA 2BB7A 3CB6A 2GG8A 4FO8A 4A6WA 5CE6A 2P99A 5E2CA 2BWVA 2Q95A 2BHCA 5FCHA
chains in the Genus database with same CATH topology
1WL6A 4R60A 4RGZ1 3IU8A 2BHDA 3RVAA 3L7GA 2B3LA 2GG7A 1WL9A 1XGMA 4S2RP 4IKSA 1KQ0A 4RZYA 2GU7A 1WN1A 1XGNA 4U70A 2GTXA 2V3YA 2IW2A 3L24A 2NQ7A 3FMQA 3TB5A 1N51A 2BWUA 4IPAA 5JI6A 3MX6A 5JHUA 3IU9A 3I7MA 1C22A 1YJ3A 4JUQA 4IECA 1XGSA 5D6EA 1R58A 4PV4A 1QXZA 2GGCA 4IDYA 1YW9A 4OOKA 4U71A 1C27A 4MATA 3OOOA 1QZYA 1B6AA 3PN9A 2GG3A 5E5BA 4QR8A 2BH3A 3IG4A 4B28A 5CDVA 2GG9A 4FUKA 3CB5A 4U75A 5CDEA 2V3ZA 1O0XA 2BHBA 5CLSA 5JFRA 2GZ5A 2B3HA 1YVMA 3D27A 1A16A 3PEBA 4S00A 2GA2A 2P98A 2BWYA 3OVKA 4RZZA 2GG2A 2GU4A 4U6EA 5CDLA 4IKTA 4IU6A 1QXWA 3BIQA 2GGBA 2GU6A 3BIPA 4U69A 4FKCA 3TAVA 1PV9A 1XGOA 5D6FA 4ZWUA 2BN7A 2BWSA 1C23A 4Z7MA 2BWTA 3S6BA 2Q92A 1WKMA 2V3XA 3FMRA 2Q94A 4FLJA 2OAZA 4HXXA 4U6WA 2BHAA 3Q6DA 1BN5A 1YW8A 5FCFA 2EVCA 1Y1NA 2EVOA 2MATA 2Q93A 2BWXA 3PKEA 2GG0A 2EVMA 3PKBA 4S01A 4FO7A 3O5VA 2G6PA 3MATA 2HOWA 3FM3A 1WY2A 2GG5A 1C24A 3IU7A 1R5GA 4S2TP 4U1BA 5CNXA 1W2MA 4IKRA 3PKDA 2GU5A 1XNZA 4U6CA 4FLKA 5CIKA 2OKNA 2EA2A 2BWWA 2EA4A 4ZNGA 1W7VA 4IKUA 3QOCA 2ADUA 3MR1A 4U6ZA 2Q96A 1R5HA 4FLLA 3RORA 4ZWPA 4U6JA 1QXYA 2V6CA 4U76A 4FLIA 4ZWOA 4KM3A 1M35A 3PKCA 2ZSGA 3CTZA 1KQ9A 4A6VA 2NQ6A 4IF7A 3PKAA 1C21A 1WBQA 1YW7A 2DFIA 1MATA 2Q8KA 1JAWA 1KP0A 1CHMA 2P9AA 4PNCA 3IL0A 1BOAA 4EGEA 3BITA 4U73A 1B59A 1WLRA 2B3KA 2BB7A 3CB6A 2GG8A 4FO8A 4A6WA 5CE6A 2P99A 5E2CA 2BWVA 2Q95A 2BHCA 5FCHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WL6 A;  4R60 A;  4RGZ 1;  3IU8 A;  2BHD A;  3RVA A;  3L7G A;  2B3L A;  2GG7 A;  1WL9 A;  1XGM A;  4S2R P;  4IKS A;  1KQ0 A;  4RZY A;  2GU7 A;  1WN1 A;  1XGN A;  4U70 A;  2GTX A;  2V3Y A;  2IW2 A;  3L24 A;  2NQ7 A;  3FMQ A;  3TB5 A;  1N51 A;  2BWU A;  4IPA A;  5JI6 A;  3MX6 A;  5JHU A;  3IU9 A;  3I7M A;  1C22 A;  1YJ3 A;  4JUQ A;  4IEC A;  1XGS A;  5D6E A;  1R58 A;  4PV4 A;  1QXZ A;  2GGC A;  4IDY A;  1YW9 A;  4OOK A;  4U71 A;  1C27 A;  4MAT A;  3OOO A;  1QZY A;  1B6A A;  3PN9 A;  2GG3 A;  5E5B A;  4QR8 A;  2BH3 A;  3IG4 A;  4B28 A;  5CDV A;  2GG9 A;  4FUK A;  3CB5 A;  4U75 A;  5CDE A;  2V3Z A;  1O0X A;  2BHB A;  5CLS A;  5JFR A;  2GZ5 A;  2B3H A;  1YVM A;  3D27 A;  1A16 A;  3PEB A;  4S00 A;  2GA2 A;  2P98 A;  2BWY A;  3OVK A;  4RZZ A;  2GG2 A;  2GU4 A;  4U6E A;  5CDL A;  4IKT A;  4IU6 A;  1QXW A;  3BIQ A;  2GGB A;  2GU6 A;  3BIP A;  4U69 A;  4FKC A;  3TAV A;  1PV9 A;  1XGO A;  5D6F A;  4ZWU A;  2BN7 A;  2BWS A;  1C23 A;  4Z7M A;  2BWT A;  3S6B A;  2Q92 A;  1WKM A;  2V3X A;  3FMR A;  2Q94 A;  4FLJ A;  2OAZ A;  4HXX A;  4U6W A;  2BHA A;  3Q6D A;  1BN5 A;  1YW8 A;  5FCF A;  2EVC A;  1Y1N A;  2EVO A;  2MAT A;  2Q93 A;  2BWX A;  3PKE A;  2GG0 A;  2EVM A;  3PKB A;  4S01 A;  4FO7 A;  3O5V A;  2G6P A;  3MAT A;  2HOW A;  3FM3 A;  1WY2 A;  2GG5 A;  1C24 A;  3IU7 A;  1R5G A;  4S2T P;  4U1B A;  5CNX A;  1W2M A;  4IKR A;  3PKD A;  2GU5 A;  1XNZ A;  4U6C A;  4FLK A;  5CIK A;  2OKN A;  2EA2 A;  2BWW A;  2EA4 A;  4ZNG A;  1W7V A;  4IKU A;  3QOC A;  2ADU A;  3MR1 A;  4U6Z A;  2Q96 A;  1R5H A;  4FLL A;  3ROR A;  4ZWP A;  4U6J A;  1QXY A;  2V6C A;  4U76 A;  4FLI A;  4ZWO A;  4KM3 A;  1M35 A;  3PKC A;  2ZSG A;  3CTZ A;  1KQ9 A;  4A6V A;  2NQ6 A;  4IF7 A;  3PKA A;  1C21 A;  1WBQ A;  1YW7 A;  2DFI A;  1MAT A;  2Q8K A;  1JAW A;  1KP0 A;  1CHM A;  2P9A A;  4PNC A;  3IL0 A;  1BOA A;  4EGE A;  3BIT A;  4U73 A;  1B59 A;  1WLR A;  2B3K A;  2BB7 A;  3CB6 A;  2GG8 A;  4FO8 A;  4A6W A;  5CE6 A;  2P99 A;  5E2C A;  2BWV A;  2Q95 A;  2BHC A;  5FCH A; 
#chains in the Genus database with same CATH topology
 1WL6 A;  4R60 A;  4RGZ 1;  3IU8 A;  2BHD A;  3RVA A;  3L7G A;  2B3L A;  2GG7 A;  1WL9 A;  1XGM A;  4S2R P;  4IKS A;  1KQ0 A;  4RZY A;  2GU7 A;  1WN1 A;  1XGN A;  4U70 A;  2GTX A;  2V3Y A;  2IW2 A;  3L24 A;  2NQ7 A;  3FMQ A;  3TB5 A;  1N51 A;  2BWU A;  4IPA A;  5JI6 A;  3MX6 A;  5JHU A;  3IU9 A;  3I7M A;  1C22 A;  1YJ3 A;  4JUQ A;  4IEC A;  1XGS A;  5D6E A;  1R58 A;  4PV4 A;  1QXZ A;  2GGC A;  4IDY A;  1YW9 A;  4OOK A;  4U71 A;  1C27 A;  4MAT A;  3OOO A;  1QZY A;  1B6A A;  3PN9 A;  2GG3 A;  5E5B A;  4QR8 A;  2BH3 A;  3IG4 A;  4B28 A;  5CDV A;  2GG9 A;  4FUK A;  3CB5 A;  4U75 A;  5CDE A;  2V3Z A;  1O0X A;  2BHB A;  5CLS A;  5JFR A;  2GZ5 A;  2B3H A;  1YVM A;  3D27 A;  1A16 A;  3PEB A;  4S00 A;  2GA2 A;  2P98 A;  2BWY A;  3OVK A;  4RZZ A;  2GG2 A;  2GU4 A;  4U6E A;  5CDL A;  4IKT A;  4IU6 A;  1QXW A;  3BIQ A;  2GGB A;  2GU6 A;  3BIP A;  4U69 A;  4FKC A;  3TAV A;  1PV9 A;  1XGO A;  5D6F A;  4ZWU A;  2BN7 A;  2BWS A;  1C23 A;  4Z7M A;  2BWT A;  3S6B A;  2Q92 A;  1WKM A;  2V3X A;  3FMR A;  2Q94 A;  4FLJ A;  2OAZ A;  4HXX A;  4U6W A;  2BHA A;  3Q6D A;  1BN5 A;  1YW8 A;  5FCF A;  2EVC A;  1Y1N A;  2EVO A;  2MAT A;  2Q93 A;  2BWX A;  3PKE A;  2GG0 A;  2EVM A;  3PKB A;  4S01 A;  4FO7 A;  3O5V A;  2G6P A;  3MAT A;  2HOW A;  3FM3 A;  1WY2 A;  2GG5 A;  1C24 A;  3IU7 A;  1R5G A;  4S2T P;  4U1B A;  5CNX A;  1W2M A;  4IKR A;  3PKD A;  2GU5 A;  1XNZ A;  4U6C A;  4FLK A;  5CIK A;  2OKN A;  2EA2 A;  2BWW A;  2EA4 A;  4ZNG A;  1W7V A;  4IKU A;  3QOC A;  2ADU A;  3MR1 A;  4U6Z A;  2Q96 A;  1R5H A;  4FLL A;  3ROR A;  4ZWP A;  4U6J A;  1QXY A;  2V6C A;  4U76 A;  4FLI A;  4ZWO A;  4KM3 A;  1M35 A;  3PKC A;  2ZSG A;  3CTZ A;  1KQ9 A;  4A6V A;  2NQ6 A;  4IF7 A;  3PKA A;  1C21 A;  1WBQ A;  1YW7 A;  2DFI A;  1MAT A;  2Q8K A;  1JAW A;  1KP0 A;  1CHM A;  2P9A A;  4PNC A;  3IL0 A;  1BOA A;  4EGE A;  3BIT A;  4U73 A;  1B59 A;  1WLR A;  2B3K A;  2BB7 A;  3CB6 A;  2GG8 A;  4FO8 A;  4A6W A;  5CE6 A;  2P99 A;  5E2C A;  2BWV A;  2Q95 A;  2BHC A;  5FCH A; 
#chains in the Genus database with same CATH homology
 1WL6 A;  4R60 A;  4RGZ 1;  3IU8 A;  2BHD A;  3RVA A;  3L7G A;  2B3L A;  2GG7 A;  1WL9 A;  1XGM A;  4S2R P;  4IKS A;  1KQ0 A;  4RZY A;  2GU7 A;  1WN1 A;  1XGN A;  4U70 A;  2GTX A;  2V3Y A;  2IW2 A;  3L24 A;  2NQ7 A;  3FMQ A;  3TB5 A;  1N51 A;  2BWU A;  4IPA A;  5JI6 A;  3MX6 A;  5JHU A;  3IU9 A;  3I7M A;  1C22 A;  1YJ3 A;  4JUQ A;  4IEC A;  1XGS A;  5D6E A;  1R58 A;  4PV4 A;  1QXZ A;  2GGC A;  4IDY A;  1YW9 A;  4OOK A;  4U71 A;  1C27 A;  4MAT A;  3OOO A;  1QZY A;  1B6A A;  3PN9 A;  2GG3 A;  5E5B A;  4QR8 A;  2BH3 A;  3IG4 A;  4B28 A;  5CDV A;  2GG9 A;  4FUK A;  3CB5 A;  4U75 A;  5CDE A;  2V3Z A;  1O0X A;  2BHB A;  5CLS A;  5JFR A;  2GZ5 A;  2B3H A;  1YVM A;  3D27 A;  1A16 A;  3PEB A;  4S00 A;  2GA2 A;  2P98 A;  2BWY A;  3OVK A;  4RZZ A;  2GG2 A;  2GU4 A;  4U6E A;  5CDL A;  4IKT A;  4IU6 A;  1QXW A;  3BIQ A;  2GGB A;  2GU6 A;  3BIP A;  4U69 A;  4FKC A;  3TAV A;  1PV9 A;  1XGO A;  5D6F A;  4ZWU A;  2BN7 A;  2BWS A;  1C23 A;  4Z7M A;  2BWT A;  3S6B A;  2Q92 A;  1WKM A;  2V3X A;  3FMR A;  2Q94 A;  4FLJ A;  2OAZ A;  4HXX A;  4U6W A;  2BHA A;  3Q6D A;  1BN5 A;  1YW8 A;  5FCF A;  2EVC A;  1Y1N A;  2EVO A;  2MAT A;  2Q93 A;  2BWX A;  3PKE A;  2GG0 A;  2EVM A;  3PKB A;  4S01 A;  4FO7 A;  3O5V A;  2G6P A;  3MAT A;  2HOW A;  3FM3 A;  1WY2 A;  2GG5 A;  1C24 A;  3IU7 A;  1R5G A;  4S2T P;  4U1B A;  5CNX A;  1W2M A;  4IKR A;  3PKD A;  2GU5 A;  1XNZ A;  4U6C A;  4FLK A;  5CIK A;  2OKN A;  2EA2 A;  2BWW A;  2EA4 A;  4ZNG A;  1W7V A;  4IKU A;  3QOC A;  2ADU A;  3MR1 A;  4U6Z A;  2Q96 A;  1R5H A;  4FLL A;  3ROR A;  4ZWP A;  4U6J A;  1QXY A;  2V6C A;  4U76 A;  4FLI A;  4ZWO A;  4KM3 A;  1M35 A;  3PKC A;  2ZSG A;  3CTZ A;  1KQ9 A;  4A6V A;  2NQ6 A;  4IF7 A;  3PKA A;  1C21 A;  1WBQ A;  1YW7 A;  2DFI A;  1MAT A;  2Q8K A;  1JAW A;  1KP0 A;  1CHM A;  2P9A A;  4PNC A;  3IL0 A;  1BOA A;  4EGE A;  3BIT A;  4U73 A;  1B59 A;  1WLR A;  2B3K A;  2BB7 A;  3CB6 A;  2GG8 A;  4FO8 A;  4A6W A;  5CE6 A;  2P99 A;  5E2C A;  2BWV A;  2Q95 A;  2BHC A;  5FCH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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