5CIKA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris in citrate condition
Total Genus 133
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
total genus 133
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cikA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cikA02
3QOCA 5E5BA 2GG2A 2MATA 2GU4A 4HXXA 2OAZA 4U76A 1WY2A 3L24A 1YW9A 2GA2A 2EVMA 2BHBA 2B3HA 3TB5A 3PKAA 2IW2A 4KM3A 4Z7MA 5CNXA 2GTXA 4RZZA 5CDLA 2B3LA 2GG8A 4IU6A 2EA2A 2Q93A 3CB5A 2BHDA 4U6EA 5CE6A 1BOAA 2P9AA 3MX6A 2ADUA 2BHCA 1C21A 1R58A 5FCFA 3I7MA 4S2TP 2GU6A 3CB6A 4B28A 4IECA 3RVAA 1YW7A 4U6CA 2Q94A 1WBQA 5D6FA 2GG9A 2V6CA 2BB7A 3PKBA 5CIKA 5D6EA 4S2RP 2V3XA 2Q8KA 3IU9A 4FO7A 3PKEA 2BWTA 2BH3A 4U73A 2G6PA 1QXYA 2Q95A 4U6JA 3RORA 1YJ3A 5E2CA 2BWSA 4FUKA 3CTZA 3MATA 1CHMA 2BWVA 1XGNA 4A6WA 3PKDA 5JFRA 4OOKA 4IKRA 2GZ5A 4JUQA 2GG5A 1KQ9A 3O5VA 1PV9A 4IPAA 1B6AA 2NQ6A 4FLKA 2NQ7A 1QZYA 4FKCA 1R5GA 4QR8A 4IKTA 3S6BA 5JHUA 2BWXA 2BWYA 5JI6A 2B3KA 2GU5A 4U69A 2DFIA 4PNCA 1QXWA 4ZWPA 2Q92A 1C22A 4FLIA 1N51A 1XNZA 3MR1A 2GG3A 1XGMA 2V3YA 1WLRA 4A6VA 4ZNGA 1Y1NA 3IU8A 1C23A 4U1BA 4U75A 2HOWA 1C27A 2P98A 5CDEA 4ZWUA 1R5HA 4U6ZA 2GG7A 2EVOA 2GU7A 4EGEA 3PN9A 1WL6A 2GG0A 1A16A 1W2MA 1W7VA 2BHAA 3FMQA 4FLJA 1KQ0A 3BIPA 2V3ZA 4IKSA 2GGBA 3TAVA 4FLLA 4MATA 2OKNA 3PEBA 4S00A 3FMRA 1C24A 1M35A 3BIQA 1BN5A 4IDYA 4U71A 5FCHA 1YW8A 3IL0A 4R60A 1WKMA 3D27A 4RZYA 4FO8A 1XGOA 1WN1A 1JAWA 1WL9A 3FM3A 3IG4A 2P99A 3PKCA 4RGZ1 5CLSA 1MATA 4IF7A 1B59A 1KP0A 3BITA 3L7GA 4PV4A 3Q6DA 3IU7A 4U6WA 4S01A 3OOOA 2EVCA 2GGCA 1YVMA 2BWUA 2ZSGA 2EA4A 2Q96A 2BWWA 5CDVA 1XGSA 2BN7A 1O0XA 4IKUA 1QXZA 4U70A 3OVKA 4ZWOA
chains in the Genus database with same CATH superfamily
3QOCA 5E5BA 2GG2A 2MATA 2GU4A 4HXXA 2OAZA 4U76A 1WY2A 3L24A 1YW9A 2GA2A 2EVMA 2BHBA 2B3HA 3TB5A 3PKAA 2IW2A 4KM3A 4Z7MA 5CNXA 2GTXA 4RZZA 5CDLA 2B3LA 2GG8A 4IU6A 2EA2A 2Q93A 3CB5A 2BHDA 4U6EA 5CE6A 1BOAA 2P9AA 3MX6A 2ADUA 2BHCA 1C21A 1R58A 5FCFA 3I7MA 4S2TP 2GU6A 3CB6A 4B28A 4IECA 3RVAA 1YW7A 4U6CA 2Q94A 1WBQA 5D6FA 2GG9A 2V6CA 2BB7A 3PKBA 5CIKA 5D6EA 4S2RP 2V3XA 2Q8KA 3IU9A 4FO7A 3PKEA 2BWTA 2BH3A 4U73A 2G6PA 1QXYA 2Q95A 4U6JA 3RORA 1YJ3A 5E2CA 2BWSA 4FUKA 3CTZA 3MATA 1CHMA 2BWVA 1XGNA 4A6WA 3PKDA 5JFRA 4OOKA 4IKRA 2GZ5A 4JUQA 2GG5A 1KQ9A 3O5VA 1PV9A 4IPAA 1B6AA 2NQ6A 4FLKA 2NQ7A 1QZYA 4FKCA 1R5GA 4QR8A 4IKTA 3S6BA 5JHUA 2BWXA 2BWYA 5JI6A 2B3KA 2GU5A 4U69A 2DFIA 4PNCA 1QXWA 4ZWPA 2Q92A 1C22A 4FLIA 1N51A 1XNZA 3MR1A 2GG3A 1XGMA 2V3YA 1WLRA 4A6VA 4ZNGA 1Y1NA 3IU8A 1C23A 4U1BA 4U75A 2HOWA 1C27A 2P98A 5CDEA 4ZWUA 1R5HA 4U6ZA 2GG7A 2EVOA 2GU7A 4EGEA 3PN9A 1WL6A 2GG0A 1A16A 1W2MA 1W7VA 2BHAA 3FMQA 4FLJA 1KQ0A 3BIPA 2V3ZA 4IKSA 2GGBA 3TAVA 4FLLA 4MATA 2OKNA 3PEBA 4S00A 3FMRA 1C24A 1M35A 3BIQA 1BN5A 4IDYA 4U71A 5FCHA 1YW8A 3IL0A 4R60A 1WKMA 3D27A 4RZYA 4FO8A 1XGOA 1WN1A 1JAWA 1WL9A 3FM3A 3IG4A 2P99A 3PKCA 4RGZ1 5CLSA 1MATA 4IF7A 1B59A 1KP0A 3BITA 3L7GA 4PV4A 3Q6DA 3IU7A 4U6WA 4S01A 3OOOA 2EVCA 2GGCA 1YVMA 2BWUA 2ZSGA 2EA4A 2Q96A 2BWWA 5CDVA 1XGSA 2BN7A 1O0XA 4IKUA 1QXZA 4U70A 3OVKA 4ZWOA
chains in the Genus database with same CATH topology
3QOCA 5E5BA 2GG2A 2MATA 2GU4A 4HXXA 2OAZA 4U76A 1WY2A 3L24A 1YW9A 2GA2A 2EVMA 2BHBA 2B3HA 3TB5A 3PKAA 2IW2A 4KM3A 4Z7MA 5CNXA 2GTXA 4RZZA 5CDLA 2B3LA 2GG8A 4IU6A 2EA2A 2Q93A 3CB5A 2BHDA 4U6EA 5CE6A 1BOAA 2P9AA 3MX6A 2ADUA 2BHCA 1C21A 1R58A 5FCFA 3I7MA 4S2TP 2GU6A 3CB6A 4B28A 4IECA 3RVAA 1YW7A 4U6CA 2Q94A 1WBQA 5D6FA 2GG9A 2V6CA 2BB7A 3PKBA 5CIKA 5D6EA 4S2RP 2V3XA 2Q8KA 3IU9A 4FO7A 3PKEA 2BWTA 2BH3A 4U73A 2G6PA 1QXYA 2Q95A 4U6JA 3RORA 1YJ3A 5E2CA 2BWSA 4FUKA 3CTZA 3MATA 1CHMA 2BWVA 1XGNA 4A6WA 3PKDA 5JFRA 4OOKA 4IKRA 2GZ5A 4JUQA 2GG5A 1KQ9A 3O5VA 1PV9A 4IPAA 1B6AA 2NQ6A 4FLKA 2NQ7A 1QZYA 4FKCA 1R5GA 4QR8A 4IKTA 3S6BA 5JHUA 2BWXA 2BWYA 5JI6A 2B3KA 2GU5A 4U69A 2DFIA 4PNCA 1QXWA 4ZWPA 2Q92A 1C22A 4FLIA 1N51A 1XNZA 3MR1A 2GG3A 1XGMA 2V3YA 1WLRA 4A6VA 4ZNGA 1Y1NA 3IU8A 1C23A 4U1BA 4U75A 2HOWA 1C27A 2P98A 5CDEA 4ZWUA 1R5HA 4U6ZA 2GG7A 2EVOA 2GU7A 4EGEA 3PN9A 1WL6A 2GG0A 1A16A 1W2MA 1W7VA 2BHAA 3FMQA 4FLJA 1KQ0A 3BIPA 2V3ZA 4IKSA 2GGBA 3TAVA 4FLLA 4MATA 2OKNA 3PEBA 4S00A 3FMRA 1C24A 1M35A 3BIQA 1BN5A 4IDYA 4U71A 5FCHA 1YW8A 3IL0A 4R60A 1WKMA 3D27A 4RZYA 4FO8A 1XGOA 1WN1A 1JAWA 1WL9A 3FM3A 3IG4A 2P99A 3PKCA 4RGZ1 5CLSA 1MATA 4IF7A 1B59A 1KP0A 3BITA 3L7GA 4PV4A 3Q6DA 3IU7A 4U6WA 4S01A 3OOOA 2EVCA 2GGCA 1YVMA 2BWUA 2ZSGA 2EA4A 2Q96A 2BWWA 5CDVA 1XGSA 2BN7A 1O0XA 4IKUA 1QXZA 4U70A 3OVKA 4ZWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QOC A;  5E5B A;  2GG2 A;  2MAT A;  2GU4 A;  4HXX A;  2OAZ A;  4U76 A;  1WY2 A;  3L24 A;  1YW9 A;  2GA2 A;  2EVM A;  2BHB A;  2B3H A;  3TB5 A;  3PKA A;  2IW2 A;  4KM3 A;  4Z7M A;  5CNX A;  2GTX A;  4RZZ A;  5CDL A;  2B3L A;  2GG8 A;  4IU6 A;  2EA2 A;  2Q93 A;  3CB5 A;  2BHD A;  4U6E A;  5CE6 A;  1BOA A;  2P9A A;  3MX6 A;  2ADU A;  2BHC A;  1C21 A;  1R58 A;  5FCF A;  3I7M A;  4S2T P;  2GU6 A;  3CB6 A;  4B28 A;  4IEC A;  3RVA A;  1YW7 A;  4U6C A;  2Q94 A;  1WBQ A;  5D6F A;  2GG9 A;  2V6C A;  2BB7 A;  3PKB A;  5CIK A;  5D6E A;  4S2R P;  2V3X A;  2Q8K A;  3IU9 A;  4FO7 A;  3PKE A;  2BWT A;  2BH3 A;  4U73 A;  2G6P A;  1QXY A;  2Q95 A;  4U6J A;  3ROR A;  1YJ3 A;  5E2C A;  2BWS A;  4FUK A;  3CTZ A;  3MAT A;  1CHM A;  2BWV A;  1XGN A;  4A6W A;  3PKD A;  5JFR A;  4OOK A;  4IKR A;  2GZ5 A;  4JUQ A;  2GG5 A;  1KQ9 A;  3O5V A;  1PV9 A;  4IPA A;  1B6A A;  2NQ6 A;  4FLK A;  2NQ7 A;  1QZY A;  4FKC A;  1R5G A;  4QR8 A;  4IKT A;  3S6B A;  5JHU A;  2BWX A;  2BWY A;  5JI6 A;  2B3K A;  2GU5 A;  4U69 A;  2DFI A;  4PNC A;  1QXW A;  4ZWP A;  2Q92 A;  1C22 A;  4FLI A;  1N51 A;  1XNZ A;  3MR1 A;  2GG3 A;  1XGM A;  2V3Y A;  1WLR A;  4A6V A;  4ZNG A;  1Y1N A;  3IU8 A;  1C23 A;  4U1B A;  4U75 A;  2HOW A;  1C27 A;  2P98 A;  5CDE A;  4ZWU A;  1R5H A;  4U6Z A;  2GG7 A;  2EVO A;  2GU7 A;  4EGE A;  3PN9 A;  1WL6 A;  2GG0 A;  1A16 A;  1W2M A;  1W7V A;  2BHA A;  3FMQ A;  4FLJ A;  1KQ0 A;  3BIP A;  2V3Z A;  4IKS A;  2GGB A;  3TAV A;  4FLL A;  4MAT A;  2OKN A;  3PEB A;  4S00 A;  3FMR A;  1C24 A;  1M35 A;  3BIQ A;  1BN5 A;  4IDY A;  4U71 A;  5FCH A;  1YW8 A;  3IL0 A;  4R60 A;  1WKM A;  3D27 A;  4RZY A;  4FO8 A;  1XGO A;  1WN1 A;  1JAW A;  1WL9 A;  3FM3 A;  3IG4 A;  2P99 A;  3PKC A;  4RGZ 1;  5CLS A;  1MAT A;  4IF7 A;  1B59 A;  1KP0 A;  3BIT A;  3L7G A;  4PV4 A;  3Q6D A;  3IU7 A;  4U6W A;  4S01 A;  3OOO A;  2EVC A;  2GGC A;  1YVM A;  2BWU A;  2ZSG A;  2EA4 A;  2Q96 A;  2BWW A;  5CDV A;  1XGS A;  2BN7 A;  1O0X A;  4IKU A;  1QXZ A;  4U70 A;  3OVK A;  4ZWO A; 
#chains in the Genus database with same CATH topology
 3QOC A;  5E5B A;  2GG2 A;  2MAT A;  2GU4 A;  4HXX A;  2OAZ A;  4U76 A;  1WY2 A;  3L24 A;  1YW9 A;  2GA2 A;  2EVM A;  2BHB A;  2B3H A;  3TB5 A;  3PKA A;  2IW2 A;  4KM3 A;  4Z7M A;  5CNX A;  2GTX A;  4RZZ A;  5CDL A;  2B3L A;  2GG8 A;  4IU6 A;  2EA2 A;  2Q93 A;  3CB5 A;  2BHD A;  4U6E A;  5CE6 A;  1BOA A;  2P9A A;  3MX6 A;  2ADU A;  2BHC A;  1C21 A;  1R58 A;  5FCF A;  3I7M A;  4S2T P;  2GU6 A;  3CB6 A;  4B28 A;  4IEC A;  3RVA A;  1YW7 A;  4U6C A;  2Q94 A;  1WBQ A;  5D6F A;  2GG9 A;  2V6C A;  2BB7 A;  3PKB A;  5CIK A;  5D6E A;  4S2R P;  2V3X A;  2Q8K A;  3IU9 A;  4FO7 A;  3PKE A;  2BWT A;  2BH3 A;  4U73 A;  2G6P A;  1QXY A;  2Q95 A;  4U6J A;  3ROR A;  1YJ3 A;  5E2C A;  2BWS A;  4FUK A;  3CTZ A;  3MAT A;  1CHM A;  2BWV A;  1XGN A;  4A6W A;  3PKD A;  5JFR A;  4OOK A;  4IKR A;  2GZ5 A;  4JUQ A;  2GG5 A;  1KQ9 A;  3O5V A;  1PV9 A;  4IPA A;  1B6A A;  2NQ6 A;  4FLK A;  2NQ7 A;  1QZY A;  4FKC A;  1R5G A;  4QR8 A;  4IKT A;  3S6B A;  5JHU A;  2BWX A;  2BWY A;  5JI6 A;  2B3K A;  2GU5 A;  4U69 A;  2DFI A;  4PNC A;  1QXW A;  4ZWP A;  2Q92 A;  1C22 A;  4FLI A;  1N51 A;  1XNZ A;  3MR1 A;  2GG3 A;  1XGM A;  2V3Y A;  1WLR A;  4A6V A;  4ZNG A;  1Y1N A;  3IU8 A;  1C23 A;  4U1B A;  4U75 A;  2HOW A;  1C27 A;  2P98 A;  5CDE A;  4ZWU A;  1R5H A;  4U6Z A;  2GG7 A;  2EVO A;  2GU7 A;  4EGE A;  3PN9 A;  1WL6 A;  2GG0 A;  1A16 A;  1W2M A;  1W7V A;  2BHA A;  3FMQ A;  4FLJ A;  1KQ0 A;  3BIP A;  2V3Z A;  4IKS A;  2GGB A;  3TAV A;  4FLL A;  4MAT A;  2OKN A;  3PEB A;  4S00 A;  3FMR A;  1C24 A;  1M35 A;  3BIQ A;  1BN5 A;  4IDY A;  4U71 A;  5FCH A;  1YW8 A;  3IL0 A;  4R60 A;  1WKM A;  3D27 A;  4RZY A;  4FO8 A;  1XGO A;  1WN1 A;  1JAW A;  1WL9 A;  3FM3 A;  3IG4 A;  2P99 A;  3PKC A;  4RGZ 1;  5CLS A;  1MAT A;  4IF7 A;  1B59 A;  1KP0 A;  3BIT A;  3L7G A;  4PV4 A;  3Q6D A;  3IU7 A;  4U6W A;  4S01 A;  3OOO A;  2EVC A;  2GGC A;  1YVM A;  2BWU A;  2ZSG A;  2EA4 A;  2Q96 A;  2BWW A;  5CDV A;  1XGS A;  2BN7 A;  1O0X A;  4IKU A;  1QXZ A;  4U70 A;  3OVK A;  4ZWO A; 
#chains in the Genus database with same CATH homology
 3QOC A;  5E5B A;  2GG2 A;  2MAT A;  2GU4 A;  4HXX A;  2OAZ A;  4U76 A;  1WY2 A;  3L24 A;  1YW9 A;  2GA2 A;  2EVM A;  2BHB A;  2B3H A;  3TB5 A;  3PKA A;  2IW2 A;  4KM3 A;  4Z7M A;  5CNX A;  2GTX A;  4RZZ A;  5CDL A;  2B3L A;  2GG8 A;  4IU6 A;  2EA2 A;  2Q93 A;  3CB5 A;  2BHD A;  4U6E A;  5CE6 A;  1BOA A;  2P9A A;  3MX6 A;  2ADU A;  2BHC A;  1C21 A;  1R58 A;  5FCF A;  3I7M A;  4S2T P;  2GU6 A;  3CB6 A;  4B28 A;  4IEC A;  3RVA A;  1YW7 A;  4U6C A;  2Q94 A;  1WBQ A;  5D6F A;  2GG9 A;  2V6C A;  2BB7 A;  3PKB A;  5CIK A;  5D6E A;  4S2R P;  2V3X A;  2Q8K A;  3IU9 A;  4FO7 A;  3PKE A;  2BWT A;  2BH3 A;  4U73 A;  2G6P A;  1QXY A;  2Q95 A;  4U6J A;  3ROR A;  1YJ3 A;  5E2C A;  2BWS A;  4FUK A;  3CTZ A;  3MAT A;  1CHM A;  2BWV A;  1XGN A;  4A6W A;  3PKD A;  5JFR A;  4OOK A;  4IKR A;  2GZ5 A;  4JUQ A;  2GG5 A;  1KQ9 A;  3O5V A;  1PV9 A;  4IPA A;  1B6A A;  2NQ6 A;  4FLK A;  2NQ7 A;  1QZY A;  4FKC A;  1R5G A;  4QR8 A;  4IKT A;  3S6B A;  5JHU A;  2BWX A;  2BWY A;  5JI6 A;  2B3K A;  2GU5 A;  4U69 A;  2DFI A;  4PNC A;  1QXW A;  4ZWP A;  2Q92 A;  1C22 A;  4FLI A;  1N51 A;  1XNZ A;  3MR1 A;  2GG3 A;  1XGM A;  2V3Y A;  1WLR A;  4A6V A;  4ZNG A;  1Y1N A;  3IU8 A;  1C23 A;  4U1B A;  4U75 A;  2HOW A;  1C27 A;  2P98 A;  5CDE A;  4ZWU A;  1R5H A;  4U6Z A;  2GG7 A;  2EVO A;  2GU7 A;  4EGE A;  3PN9 A;  1WL6 A;  2GG0 A;  1A16 A;  1W2M A;  1W7V A;  2BHA A;  3FMQ A;  4FLJ A;  1KQ0 A;  3BIP A;  2V3Z A;  4IKS A;  2GGB A;  3TAV A;  4FLL A;  4MAT A;  2OKN A;  3PEB A;  4S00 A;  3FMR A;  1C24 A;  1M35 A;  3BIQ A;  1BN5 A;  4IDY A;  4U71 A;  5FCH A;  1YW8 A;  3IL0 A;  4R60 A;  1WKM A;  3D27 A;  4RZY A;  4FO8 A;  1XGO A;  1WN1 A;  1JAW A;  1WL9 A;  3FM3 A;  3IG4 A;  2P99 A;  3PKC A;  4RGZ 1;  5CLS A;  1MAT A;  4IF7 A;  1B59 A;  1KP0 A;  3BIT A;  3L7G A;  4PV4 A;  3Q6D A;  3IU7 A;  4U6W A;  4S01 A;  3OOO A;  2EVC A;  2GGC A;  1YVM A;  2BWU A;  2ZSG A;  2EA4 A;  2Q96 A;  2BWW A;  5CDV A;  1XGS A;  2BN7 A;  1O0X A;  4IKU A;  1QXZ A;  4U70 A;  3OVK A;  4ZWO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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