5CIKA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris in citrate condition
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 133
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cikA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cikA02
4MATA 1XNZA 4IF7A 4S00A 2BHCA 1O0XA 3S6BA 3CB6A 2P99A 5JFRA 4PV4A 4EGEA 4FLLA 3TAVA 2Q93A 2BB7A 2BWXA 4S01A 4RZZA 3BIPA 1R5HA 3CTZA 3IU8A 5D6FA 2ZSGA 1B6AA 4Z7MA 4U6WA 2GZ5A 4U75A 2EVCA 1WL9A 2V3XA 2NQ7A 1WBQA 3D27A 2ADUA 5FCFA 3FM3A 1C21A 2BWSA 2EA2A 3O5VA 1C24A 4FKCA 1QXWA 1QZYA 2Q95A 2P98A 4ZNGA 4S2RP 2V6CA 3BITA 1QXYA 2NQ6A 4U70A 2BWWA 3PKAA 5JHUA 4IKRA 2BWVA 1QXZA 4B28A 2B3LA 4FLKA 3BIQA 4ZWPA 2GTXA 1XGOA 4IKTA 4U6EA 2Q8KA 2GU4A 5JI6A 1JAWA 3OVKA 2GG8A 4U6ZA 1YJ3A 3I7MA 4S2TP 4FUKA 2Q94A 3Q6DA 2GU6A 1WL6A 2GG7A 1WN1A 2OKNA 4IPAA 4A6VA 4RZYA 2BHAA 4U6JA 1KQ9A 3RORA 1A16A 5CDEA 1YW9A 4IU6A 2GA2A 4JUQA 1XGMA 3MATA 5E2CA 3PKDA 1PV9A 4FO7A 2IW2A 1WY2A 2GG2A 4U71A 2V3YA 2G6PA 5CDVA 1C22A 3FMQA 2GU5A 4U6CA 3TB5A 4IECA 2P9AA 1C23A 4U73A 3PKEA 1KQ0A 1KP0A 2Q92A 3PKCA 2V3ZA 2BWTA 4U69A 3IL0A 4U1BA 1M35A 4U76A 1B59A 3MX6A 2GG3A 1R5GA 4ZWUA 2BN7A 2OAZA 1W7VA 2EVOA 2BH3A 4HXXA 1WKMA 3FMRA 5CDLA 4IDYA 1XGSA 1YW7A 3OOOA 4A6WA 1CHMA 3PN9A 3PKBA 4R60A 4RGZ1 2GU7A 2GG5A 1Y1NA 2Q96A 4FLIA 1W2MA 3MR1A 1MATA 2BHBA 1BN5A 2GG9A 3IU7A 5D6EA 2MATA 4IKUA 2DFIA 4KM3A 2BWUA 5CE6A 4IKSA 2BWYA 5FCHA 1YW8A 3IG4A 3CB5A 4FLJA 2HOWA 2B3HA 4QR8A 3QOCA 1YVMA 4PNCA 1R58A 2B3KA 5E5BA 1N51A 2GGBA 3IU9A 5CIKA 2GG0A 5CLSA 1BOAA 4OOKA 5CNXA 3L24A 3L7GA 3PEBA 1C27A 1WLRA 2BHDA 1XGNA 2EA4A 3RVAA 2GGCA 4ZWOA 2EVMA 4FO8A
chains in the Genus database with same CATH superfamily
4MATA 1XNZA 4IF7A 4S00A 2BHCA 1O0XA 3S6BA 3CB6A 2P99A 5JFRA 4PV4A 4EGEA 4FLLA 3TAVA 2Q93A 2BB7A 2BWXA 4S01A 4RZZA 3BIPA 1R5HA 3CTZA 3IU8A 5D6FA 2ZSGA 1B6AA 4Z7MA 4U6WA 2GZ5A 4U75A 2EVCA 1WL9A 2V3XA 2NQ7A 1WBQA 3D27A 2ADUA 5FCFA 3FM3A 1C21A 2BWSA 2EA2A 3O5VA 1C24A 4FKCA 1QXWA 1QZYA 2Q95A 2P98A 4ZNGA 4S2RP 2V6CA 3BITA 1QXYA 2NQ6A 4U70A 2BWWA 3PKAA 5JHUA 4IKRA 2BWVA 1QXZA 4B28A 2B3LA 4FLKA 3BIQA 4ZWPA 2GTXA 1XGOA 4IKTA 4U6EA 2Q8KA 2GU4A 5JI6A 1JAWA 3OVKA 2GG8A 4U6ZA 1YJ3A 3I7MA 4S2TP 4FUKA 2Q94A 3Q6DA 2GU6A 1WL6A 2GG7A 1WN1A 2OKNA 4IPAA 4A6VA 4RZYA 2BHAA 4U6JA 1KQ9A 3RORA 1A16A 5CDEA 1YW9A 4IU6A 2GA2A 4JUQA 1XGMA 3MATA 5E2CA 3PKDA 1PV9A 4FO7A 2IW2A 1WY2A 2GG2A 4U71A 2V3YA 2G6PA 5CDVA 1C22A 3FMQA 2GU5A 4U6CA 3TB5A 4IECA 2P9AA 1C23A 4U73A 3PKEA 1KQ0A 1KP0A 2Q92A 3PKCA 2V3ZA 2BWTA 4U69A 3IL0A 4U1BA 1M35A 4U76A 1B59A 3MX6A 2GG3A 1R5GA 4ZWUA 2BN7A 2OAZA 1W7VA 2EVOA 2BH3A 4HXXA 1WKMA 3FMRA 5CDLA 4IDYA 1XGSA 1YW7A 3OOOA 4A6WA 1CHMA 3PN9A 3PKBA 4R60A 4RGZ1 2GU7A 2GG5A 1Y1NA 2Q96A 4FLIA 1W2MA 3MR1A 1MATA 2BHBA 1BN5A 2GG9A 3IU7A 5D6EA 2MATA 4IKUA 2DFIA 4KM3A 2BWUA 5CE6A 4IKSA 2BWYA 5FCHA 1YW8A 3IG4A 3CB5A 4FLJA 2HOWA 2B3HA 4QR8A 3QOCA 1YVMA 4PNCA 1R58A 2B3KA 5E5BA 1N51A 2GGBA 3IU9A 5CIKA 2GG0A 5CLSA 1BOAA 4OOKA 5CNXA 3L24A 3L7GA 3PEBA 1C27A 1WLRA 2BHDA 1XGNA 2EA4A 3RVAA 2GGCA 4ZWOA 2EVMA 4FO8A
chains in the Genus database with same CATH topology
4MATA 1XNZA 4IF7A 4S00A 2BHCA 1O0XA 3S6BA 3CB6A 2P99A 5JFRA 4PV4A 4EGEA 4FLLA 3TAVA 2Q93A 2BB7A 2BWXA 4S01A 4RZZA 3BIPA 1R5HA 3CTZA 3IU8A 5D6FA 2ZSGA 1B6AA 4Z7MA 4U6WA 2GZ5A 4U75A 2EVCA 1WL9A 2V3XA 2NQ7A 1WBQA 3D27A 2ADUA 5FCFA 3FM3A 1C21A 2BWSA 2EA2A 3O5VA 1C24A 4FKCA 1QXWA 1QZYA 2Q95A 2P98A 4ZNGA 4S2RP 2V6CA 3BITA 1QXYA 2NQ6A 4U70A 2BWWA 3PKAA 5JHUA 4IKRA 2BWVA 1QXZA 4B28A 2B3LA 4FLKA 3BIQA 4ZWPA 2GTXA 1XGOA 4IKTA 4U6EA 2Q8KA 2GU4A 5JI6A 1JAWA 3OVKA 2GG8A 4U6ZA 1YJ3A 3I7MA 4S2TP 4FUKA 2Q94A 3Q6DA 2GU6A 1WL6A 2GG7A 1WN1A 2OKNA 4IPAA 4A6VA 4RZYA 2BHAA 4U6JA 1KQ9A 3RORA 1A16A 5CDEA 1YW9A 4IU6A 2GA2A 4JUQA 1XGMA 3MATA 5E2CA 3PKDA 1PV9A 4FO7A 2IW2A 1WY2A 2GG2A 4U71A 2V3YA 2G6PA 5CDVA 1C22A 3FMQA 2GU5A 4U6CA 3TB5A 4IECA 2P9AA 1C23A 4U73A 3PKEA 1KQ0A 1KP0A 2Q92A 3PKCA 2V3ZA 2BWTA 4U69A 3IL0A 4U1BA 1M35A 4U76A 1B59A 3MX6A 2GG3A 1R5GA 4ZWUA 2BN7A 2OAZA 1W7VA 2EVOA 2BH3A 4HXXA 1WKMA 3FMRA 5CDLA 4IDYA 1XGSA 1YW7A 3OOOA 4A6WA 1CHMA 3PN9A 3PKBA 4R60A 4RGZ1 2GU7A 2GG5A 1Y1NA 2Q96A 4FLIA 1W2MA 3MR1A 1MATA 2BHBA 1BN5A 2GG9A 3IU7A 5D6EA 2MATA 4IKUA 2DFIA 4KM3A 2BWUA 5CE6A 4IKSA 2BWYA 5FCHA 1YW8A 3IG4A 3CB5A 4FLJA 2HOWA 2B3HA 4QR8A 3QOCA 1YVMA 4PNCA 1R58A 2B3KA 5E5BA 1N51A 2GGBA 3IU9A 5CIKA 2GG0A 5CLSA 1BOAA 4OOKA 5CNXA 3L24A 3L7GA 3PEBA 1C27A 1WLRA 2BHDA 1XGNA 2EA4A 3RVAA 2GGCA 4ZWOA 2EVMA 4FO8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MAT A;  1XNZ A;  4IF7 A;  4S00 A;  2BHC A;  1O0X A;  3S6B A;  3CB6 A;  2P99 A;  5JFR A;  4PV4 A;  4EGE A;  4FLL A;  3TAV A;  2Q93 A;  2BB7 A;  2BWX A;  4S01 A;  4RZZ A;  3BIP A;  1R5H A;  3CTZ A;  3IU8 A;  5D6F A;  2ZSG A;  1B6A A;  4Z7M A;  4U6W A;  2GZ5 A;  4U75 A;  2EVC A;  1WL9 A;  2V3X A;  2NQ7 A;  1WBQ A;  3D27 A;  2ADU A;  5FCF A;  3FM3 A;  1C21 A;  2BWS A;  2EA2 A;  3O5V A;  1C24 A;  4FKC A;  1QXW A;  1QZY A;  2Q95 A;  2P98 A;  4ZNG A;  4S2R P;  2V6C A;  3BIT A;  1QXY A;  2NQ6 A;  4U70 A;  2BWW A;  3PKA A;  5JHU A;  4IKR A;  2BWV A;  1QXZ A;  4B28 A;  2B3L A;  4FLK A;  3BIQ A;  4ZWP A;  2GTX A;  1XGO A;  4IKT A;  4U6E A;  2Q8K A;  2GU4 A;  5JI6 A;  1JAW A;  3OVK A;  2GG8 A;  4U6Z A;  1YJ3 A;  3I7M A;  4S2T P;  4FUK A;  2Q94 A;  3Q6D A;  2GU6 A;  1WL6 A;  2GG7 A;  1WN1 A;  2OKN A;  4IPA A;  4A6V A;  4RZY A;  2BHA A;  4U6J A;  1KQ9 A;  3ROR A;  1A16 A;  5CDE A;  1YW9 A;  4IU6 A;  2GA2 A;  4JUQ A;  1XGM A;  3MAT A;  5E2C A;  3PKD A;  1PV9 A;  4FO7 A;  2IW2 A;  1WY2 A;  2GG2 A;  4U71 A;  2V3Y A;  2G6P A;  5CDV A;  1C22 A;  3FMQ A;  2GU5 A;  4U6C A;  3TB5 A;  4IEC A;  2P9A A;  1C23 A;  4U73 A;  3PKE A;  1KQ0 A;  1KP0 A;  2Q92 A;  3PKC A;  2V3Z A;  2BWT A;  4U69 A;  3IL0 A;  4U1B A;  1M35 A;  4U76 A;  1B59 A;  3MX6 A;  2GG3 A;  1R5G A;  4ZWU A;  2BN7 A;  2OAZ A;  1W7V A;  2EVO A;  2BH3 A;  4HXX A;  1WKM A;  3FMR A;  5CDL A;  4IDY A;  1XGS A;  1YW7 A;  3OOO A;  4A6W A;  1CHM A;  3PN9 A;  3PKB A;  4R60 A;  4RGZ 1;  2GU7 A;  2GG5 A;  1Y1N A;  2Q96 A;  4FLI A;  1W2M A;  3MR1 A;  1MAT A;  2BHB A;  1BN5 A;  2GG9 A;  3IU7 A;  5D6E A;  2MAT A;  4IKU A;  2DFI A;  4KM3 A;  2BWU A;  5CE6 A;  4IKS A;  2BWY A;  5FCH A;  1YW8 A;  3IG4 A;  3CB5 A;  4FLJ A;  2HOW A;  2B3H A;  4QR8 A;  3QOC A;  1YVM A;  4PNC A;  1R58 A;  2B3K A;  5E5B A;  1N51 A;  2GGB A;  3IU9 A;  5CIK A;  2GG0 A;  5CLS A;  1BOA A;  4OOK A;  5CNX A;  3L24 A;  3L7G A;  3PEB A;  1C27 A;  1WLR A;  2BHD A;  1XGN A;  2EA4 A;  3RVA A;  2GGC A;  4ZWO A;  2EVM A;  4FO8 A; 
#chains in the Genus database with same CATH topology
 4MAT A;  1XNZ A;  4IF7 A;  4S00 A;  2BHC A;  1O0X A;  3S6B A;  3CB6 A;  2P99 A;  5JFR A;  4PV4 A;  4EGE A;  4FLL A;  3TAV A;  2Q93 A;  2BB7 A;  2BWX A;  4S01 A;  4RZZ A;  3BIP A;  1R5H A;  3CTZ A;  3IU8 A;  5D6F A;  2ZSG A;  1B6A A;  4Z7M A;  4U6W A;  2GZ5 A;  4U75 A;  2EVC A;  1WL9 A;  2V3X A;  2NQ7 A;  1WBQ A;  3D27 A;  2ADU A;  5FCF A;  3FM3 A;  1C21 A;  2BWS A;  2EA2 A;  3O5V A;  1C24 A;  4FKC A;  1QXW A;  1QZY A;  2Q95 A;  2P98 A;  4ZNG A;  4S2R P;  2V6C A;  3BIT A;  1QXY A;  2NQ6 A;  4U70 A;  2BWW A;  3PKA A;  5JHU A;  4IKR A;  2BWV A;  1QXZ A;  4B28 A;  2B3L A;  4FLK A;  3BIQ A;  4ZWP A;  2GTX A;  1XGO A;  4IKT A;  4U6E A;  2Q8K A;  2GU4 A;  5JI6 A;  1JAW A;  3OVK A;  2GG8 A;  4U6Z A;  1YJ3 A;  3I7M A;  4S2T P;  4FUK A;  2Q94 A;  3Q6D A;  2GU6 A;  1WL6 A;  2GG7 A;  1WN1 A;  2OKN A;  4IPA A;  4A6V A;  4RZY A;  2BHA A;  4U6J A;  1KQ9 A;  3ROR A;  1A16 A;  5CDE A;  1YW9 A;  4IU6 A;  2GA2 A;  4JUQ A;  1XGM A;  3MAT A;  5E2C A;  3PKD A;  1PV9 A;  4FO7 A;  2IW2 A;  1WY2 A;  2GG2 A;  4U71 A;  2V3Y A;  2G6P A;  5CDV A;  1C22 A;  3FMQ A;  2GU5 A;  4U6C A;  3TB5 A;  4IEC A;  2P9A A;  1C23 A;  4U73 A;  3PKE A;  1KQ0 A;  1KP0 A;  2Q92 A;  3PKC A;  2V3Z A;  2BWT A;  4U69 A;  3IL0 A;  4U1B A;  1M35 A;  4U76 A;  1B59 A;  3MX6 A;  2GG3 A;  1R5G A;  4ZWU A;  2BN7 A;  2OAZ A;  1W7V A;  2EVO A;  2BH3 A;  4HXX A;  1WKM A;  3FMR A;  5CDL A;  4IDY A;  1XGS A;  1YW7 A;  3OOO A;  4A6W A;  1CHM A;  3PN9 A;  3PKB A;  4R60 A;  4RGZ 1;  2GU7 A;  2GG5 A;  1Y1N A;  2Q96 A;  4FLI A;  1W2M A;  3MR1 A;  1MAT A;  2BHB A;  1BN5 A;  2GG9 A;  3IU7 A;  5D6E A;  2MAT A;  4IKU A;  2DFI A;  4KM3 A;  2BWU A;  5CE6 A;  4IKS A;  2BWY A;  5FCH A;  1YW8 A;  3IG4 A;  3CB5 A;  4FLJ A;  2HOW A;  2B3H A;  4QR8 A;  3QOC A;  1YVM A;  4PNC A;  1R58 A;  2B3K A;  5E5B A;  1N51 A;  2GGB A;  3IU9 A;  5CIK A;  2GG0 A;  5CLS A;  1BOA A;  4OOK A;  5CNX A;  3L24 A;  3L7G A;  3PEB A;  1C27 A;  1WLR A;  2BHD A;  1XGN A;  2EA4 A;  3RVA A;  2GGC A;  4ZWO A;  2EVM A;  4FO8 A; 
#chains in the Genus database with same CATH homology
 4MAT A;  1XNZ A;  4IF7 A;  4S00 A;  2BHC A;  1O0X A;  3S6B A;  3CB6 A;  2P99 A;  5JFR A;  4PV4 A;  4EGE A;  4FLL A;  3TAV A;  2Q93 A;  2BB7 A;  2BWX A;  4S01 A;  4RZZ A;  3BIP A;  1R5H A;  3CTZ A;  3IU8 A;  5D6F A;  2ZSG A;  1B6A A;  4Z7M A;  4U6W A;  2GZ5 A;  4U75 A;  2EVC A;  1WL9 A;  2V3X A;  2NQ7 A;  1WBQ A;  3D27 A;  2ADU A;  5FCF A;  3FM3 A;  1C21 A;  2BWS A;  2EA2 A;  3O5V A;  1C24 A;  4FKC A;  1QXW A;  1QZY A;  2Q95 A;  2P98 A;  4ZNG A;  4S2R P;  2V6C A;  3BIT A;  1QXY A;  2NQ6 A;  4U70 A;  2BWW A;  3PKA A;  5JHU A;  4IKR A;  2BWV A;  1QXZ A;  4B28 A;  2B3L A;  4FLK A;  3BIQ A;  4ZWP A;  2GTX A;  1XGO A;  4IKT A;  4U6E A;  2Q8K A;  2GU4 A;  5JI6 A;  1JAW A;  3OVK A;  2GG8 A;  4U6Z A;  1YJ3 A;  3I7M A;  4S2T P;  4FUK A;  2Q94 A;  3Q6D A;  2GU6 A;  1WL6 A;  2GG7 A;  1WN1 A;  2OKN A;  4IPA A;  4A6V A;  4RZY A;  2BHA A;  4U6J A;  1KQ9 A;  3ROR A;  1A16 A;  5CDE A;  1YW9 A;  4IU6 A;  2GA2 A;  4JUQ A;  1XGM A;  3MAT A;  5E2C A;  3PKD A;  1PV9 A;  4FO7 A;  2IW2 A;  1WY2 A;  2GG2 A;  4U71 A;  2V3Y A;  2G6P A;  5CDV A;  1C22 A;  3FMQ A;  2GU5 A;  4U6C A;  3TB5 A;  4IEC A;  2P9A A;  1C23 A;  4U73 A;  3PKE A;  1KQ0 A;  1KP0 A;  2Q92 A;  3PKC A;  2V3Z A;  2BWT A;  4U69 A;  3IL0 A;  4U1B A;  1M35 A;  4U76 A;  1B59 A;  3MX6 A;  2GG3 A;  1R5G A;  4ZWU A;  2BN7 A;  2OAZ A;  1W7V A;  2EVO A;  2BH3 A;  4HXX A;  1WKM A;  3FMR A;  5CDL A;  4IDY A;  1XGS A;  1YW7 A;  3OOO A;  4A6W A;  1CHM A;  3PN9 A;  3PKB A;  4R60 A;  4RGZ 1;  2GU7 A;  2GG5 A;  1Y1N A;  2Q96 A;  4FLI A;  1W2M A;  3MR1 A;  1MAT A;  2BHB A;  1BN5 A;  2GG9 A;  3IU7 A;  5D6E A;  2MAT A;  4IKU A;  2DFI A;  4KM3 A;  2BWU A;  5CE6 A;  4IKS A;  2BWY A;  5FCH A;  1YW8 A;  3IG4 A;  3CB5 A;  4FLJ A;  2HOW A;  2B3H A;  4QR8 A;  3QOC A;  1YVM A;  4PNC A;  1R58 A;  2B3K A;  5E5B A;  1N51 A;  2GGB A;  3IU9 A;  5CIK A;  2GG0 A;  5CLS A;  1BOA A;  4OOK A;  5CNX A;  3L24 A;  3L7G A;  3PEB A;  1C27 A;  1WLR A;  2BHD A;  1XGN A;  2EA4 A;  3RVA A;  2GGC A;  4ZWO A;  2EVM A;  4FO8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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