5CDEA

R372a mutant of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
398
structure length
398
Chain Sequence
STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVALEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
rcsb
source organism Xanthomonas campestris
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 133
structure length 398
sequence length 398
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdeA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdeA02
2DFIA 3CTZA 4U76A 1MATA 5CDLA 1C27A 3RVAA 1R5GA 4S01A 3IL0A 3L24A 4U6CA 1WL6A 2BHDA 5CLSA 3TB5A 4S00A 2P98A 2Q92A 2BWWA 3FMQA 2OKNA 1O0XA 4IDYA 4PNCA 3CB6A 4FKCA 3IU7A 4EGEA 5E2CA 1W7VA 2BWYA 5JFRA 2EVCA 3RORA 2GU6A 5D6EA 2EVMA 2BHBA 4OOKA 5D6FA 4R60A 4ZWUA 4Z7MA 3CB5A 5JHUA 2B3KA 4ZWOA 1M35A 4IKUA 2GGBA 3TAVA 4U6JA 3O5VA 4RZYA 2BHAA 1XGMA 1XGNA 4FO8A 1XGSA 3MX6A 4IKRA 1QZYA 1C21A 2B3LA 2EA2A 4FLKA 2GU4A 4FLIA 2GG7A 3FM3A 2ADUA 5CDVA 1B59A 1WL9A 2BB7A 2GTXA 3D27A 1PV9A 2B3HA 2GG0A 3BITA 2GA2A 1BN5A 2EVOA 1Y1NA 2GG3A 4ZNGA 2GG8A 5JI6A 2GG5A 4KM3A 3PN9A 4U70A 4HXXA 1QXZA 2IW2A 2OAZA 4U71A 2Q8KA 3S6BA 1A16A 1C24A 1XGOA 5CDEA 3PKBA 3MATA 2HOWA 3PKDA 1R5HA 2V3YA 3BIQA 2GZ5A 3MR1A 1JAWA 4FO7A 4MATA 3OOOA 5CE6A 5CIKA 3I7MA 4U6ZA 4FLJA 3PKEA 1N51A 4S2RP 4QR8A 1KQ0A 4B28A 4S2TP 4JUQA 2BWTA 3PKCA 1KQ9A 2EA4A 3FMRA 4A6WA 4IECA 3PKAA 2BWXA 2BWUA 1YW9A 1KP0A 1W2MA 2P9AA 1BOAA 2Q93A 2BWVA 3IU8A 4RZZA 2BWSA 2G6PA 4U6WA 4FUKA 4IPAA 5FCHA 1YW7A 2P99A 4U6EA 4ZWPA 2V3XA 3OVKA 1B6AA 4IKTA 1CHMA 3L7GA 2GG9A 2ZSGA 2BN7A 3IU9A 5E5BA 5CNXA 1WKMA 2MATA 4IU6A 4U1BA 3IG4A 1XNZA 4RGZ1 2Q95A 2Q94A 3PEBA 1C23A 2Q96A 1YVMA 3Q6DA 4U73A 4U75A 2GGCA 2GU7A 4IF7A 4U69A 2GU5A 4PV4A 4A6VA 1C22A 2NQ6A 3BIPA 5FCFA 1WY2A 2V6CA 2BH3A 1WBQA 2BHCA 1R58A 3QOCA 2NQ7A 4FLLA 1QXYA 1YJ3A 2V3ZA 1WLRA 1QXWA 1YW8A 4IKSA 1WN1A 2GG2A
chains in the Genus database with same CATH superfamily
2DFIA 3CTZA 4U76A 1MATA 5CDLA 1C27A 3RVAA 1R5GA 4S01A 3IL0A 3L24A 4U6CA 1WL6A 2BHDA 5CLSA 3TB5A 4S00A 2P98A 2Q92A 2BWWA 3FMQA 2OKNA 1O0XA 4IDYA 4PNCA 3CB6A 4FKCA 3IU7A 4EGEA 5E2CA 1W7VA 2BWYA 5JFRA 2EVCA 3RORA 2GU6A 5D6EA 2EVMA 2BHBA 4OOKA 5D6FA 4R60A 4ZWUA 4Z7MA 3CB5A 5JHUA 2B3KA 4ZWOA 1M35A 4IKUA 2GGBA 3TAVA 4U6JA 3O5VA 4RZYA 2BHAA 1XGMA 1XGNA 4FO8A 1XGSA 3MX6A 4IKRA 1QZYA 1C21A 2B3LA 2EA2A 4FLKA 2GU4A 4FLIA 2GG7A 3FM3A 2ADUA 5CDVA 1B59A 1WL9A 2BB7A 2GTXA 3D27A 1PV9A 2B3HA 2GG0A 3BITA 2GA2A 1BN5A 2EVOA 1Y1NA 2GG3A 4ZNGA 2GG8A 5JI6A 2GG5A 4KM3A 3PN9A 4U70A 4HXXA 1QXZA 2IW2A 2OAZA 4U71A 2Q8KA 3S6BA 1A16A 1C24A 1XGOA 5CDEA 3PKBA 3MATA 2HOWA 3PKDA 1R5HA 2V3YA 3BIQA 2GZ5A 3MR1A 1JAWA 4FO7A 4MATA 3OOOA 5CE6A 5CIKA 3I7MA 4U6ZA 4FLJA 3PKEA 1N51A 4S2RP 4QR8A 1KQ0A 4B28A 4S2TP 4JUQA 2BWTA 3PKCA 1KQ9A 2EA4A 3FMRA 4A6WA 4IECA 3PKAA 2BWXA 2BWUA 1YW9A 1KP0A 1W2MA 2P9AA 1BOAA 2Q93A 2BWVA 3IU8A 4RZZA 2BWSA 2G6PA 4U6WA 4FUKA 4IPAA 5FCHA 1YW7A 2P99A 4U6EA 4ZWPA 2V3XA 3OVKA 1B6AA 4IKTA 1CHMA 3L7GA 2GG9A 2ZSGA 2BN7A 3IU9A 5E5BA 5CNXA 1WKMA 2MATA 4IU6A 4U1BA 3IG4A 1XNZA 4RGZ1 2Q95A 2Q94A 3PEBA 1C23A 2Q96A 1YVMA 3Q6DA 4U73A 4U75A 2GGCA 2GU7A 4IF7A 4U69A 2GU5A 4PV4A 4A6VA 1C22A 2NQ6A 3BIPA 5FCFA 1WY2A 2V6CA 2BH3A 1WBQA 2BHCA 1R58A 3QOCA 2NQ7A 4FLLA 1QXYA 1YJ3A 2V3ZA 1WLRA 1QXWA 1YW8A 4IKSA 1WN1A 2GG2A
chains in the Genus database with same CATH topology
2DFIA 3CTZA 4U76A 1MATA 5CDLA 1C27A 3RVAA 1R5GA 4S01A 3IL0A 3L24A 4U6CA 1WL6A 2BHDA 5CLSA 3TB5A 4S00A 2P98A 2Q92A 2BWWA 3FMQA 2OKNA 1O0XA 4IDYA 4PNCA 3CB6A 4FKCA 3IU7A 4EGEA 5E2CA 1W7VA 2BWYA 5JFRA 2EVCA 3RORA 2GU6A 5D6EA 2EVMA 2BHBA 4OOKA 5D6FA 4R60A 4ZWUA 4Z7MA 3CB5A 5JHUA 2B3KA 4ZWOA 1M35A 4IKUA 2GGBA 3TAVA 4U6JA 3O5VA 4RZYA 2BHAA 1XGMA 1XGNA 4FO8A 1XGSA 3MX6A 4IKRA 1QZYA 1C21A 2B3LA 2EA2A 4FLKA 2GU4A 4FLIA 2GG7A 3FM3A 2ADUA 5CDVA 1B59A 1WL9A 2BB7A 2GTXA 3D27A 1PV9A 2B3HA 2GG0A 3BITA 2GA2A 1BN5A 2EVOA 1Y1NA 2GG3A 4ZNGA 2GG8A 5JI6A 2GG5A 4KM3A 3PN9A 4U70A 4HXXA 1QXZA 2IW2A 2OAZA 4U71A 2Q8KA 3S6BA 1A16A 1C24A 1XGOA 5CDEA 3PKBA 3MATA 2HOWA 3PKDA 1R5HA 2V3YA 3BIQA 2GZ5A 3MR1A 1JAWA 4FO7A 4MATA 3OOOA 5CE6A 5CIKA 3I7MA 4U6ZA 4FLJA 3PKEA 1N51A 4S2RP 4QR8A 1KQ0A 4B28A 4S2TP 4JUQA 2BWTA 3PKCA 1KQ9A 2EA4A 3FMRA 4A6WA 4IECA 3PKAA 2BWXA 2BWUA 1YW9A 1KP0A 1W2MA 2P9AA 1BOAA 2Q93A 2BWVA 3IU8A 4RZZA 2BWSA 2G6PA 4U6WA 4FUKA 4IPAA 5FCHA 1YW7A 2P99A 4U6EA 4ZWPA 2V3XA 3OVKA 1B6AA 4IKTA 1CHMA 3L7GA 2GG9A 2ZSGA 2BN7A 3IU9A 5E5BA 5CNXA 1WKMA 2MATA 4IU6A 4U1BA 3IG4A 1XNZA 4RGZ1 2Q95A 2Q94A 3PEBA 1C23A 2Q96A 1YVMA 3Q6DA 4U73A 4U75A 2GGCA 2GU7A 4IF7A 4U69A 2GU5A 4PV4A 4A6VA 1C22A 2NQ6A 3BIPA 5FCFA 1WY2A 2V6CA 2BH3A 1WBQA 2BHCA 1R58A 3QOCA 2NQ7A 4FLLA 1QXYA 1YJ3A 2V3ZA 1WLRA 1QXWA 1YW8A 4IKSA 1WN1A 2GG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DFI A;  3CTZ A;  4U76 A;  1MAT A;  5CDL A;  1C27 A;  3RVA A;  1R5G A;  4S01 A;  3IL0 A;  3L24 A;  4U6C A;  1WL6 A;  2BHD A;  5CLS A;  3TB5 A;  4S00 A;  2P98 A;  2Q92 A;  2BWW A;  3FMQ A;  2OKN A;  1O0X A;  4IDY A;  4PNC A;  3CB6 A;  4FKC A;  3IU7 A;  4EGE A;  5E2C A;  1W7V A;  2BWY A;  5JFR A;  2EVC A;  3ROR A;  2GU6 A;  5D6E A;  2EVM A;  2BHB A;  4OOK A;  5D6F A;  4R60 A;  4ZWU A;  4Z7M A;  3CB5 A;  5JHU A;  2B3K A;  4ZWO A;  1M35 A;  4IKU A;  2GGB A;  3TAV A;  4U6J A;  3O5V A;  4RZY A;  2BHA A;  1XGM A;  1XGN A;  4FO8 A;  1XGS A;  3MX6 A;  4IKR A;  1QZY A;  1C21 A;  2B3L A;  2EA2 A;  4FLK A;  2GU4 A;  4FLI A;  2GG7 A;  3FM3 A;  2ADU A;  5CDV A;  1B59 A;  1WL9 A;  2BB7 A;  2GTX A;  3D27 A;  1PV9 A;  2B3H A;  2GG0 A;  3BIT A;  2GA2 A;  1BN5 A;  2EVO A;  1Y1N A;  2GG3 A;  4ZNG A;  2GG8 A;  5JI6 A;  2GG5 A;  4KM3 A;  3PN9 A;  4U70 A;  4HXX A;  1QXZ A;  2IW2 A;  2OAZ A;  4U71 A;  2Q8K A;  3S6B A;  1A16 A;  1C24 A;  1XGO A;  5CDE A;  3PKB A;  3MAT A;  2HOW A;  3PKD A;  1R5H A;  2V3Y A;  3BIQ A;  2GZ5 A;  3MR1 A;  1JAW A;  4FO7 A;  4MAT A;  3OOO A;  5CE6 A;  5CIK A;  3I7M A;  4U6Z A;  4FLJ A;  3PKE A;  1N51 A;  4S2R P;  4QR8 A;  1KQ0 A;  4B28 A;  4S2T P;  4JUQ A;  2BWT A;  3PKC A;  1KQ9 A;  2EA4 A;  3FMR A;  4A6W A;  4IEC A;  3PKA A;  2BWX A;  2BWU A;  1YW9 A;  1KP0 A;  1W2M A;  2P9A A;  1BOA A;  2Q93 A;  2BWV A;  3IU8 A;  4RZZ A;  2BWS A;  2G6P A;  4U6W A;  4FUK A;  4IPA A;  5FCH A;  1YW7 A;  2P99 A;  4U6E A;  4ZWP A;  2V3X A;  3OVK A;  1B6A A;  4IKT A;  1CHM A;  3L7G A;  2GG9 A;  2ZSG A;  2BN7 A;  3IU9 A;  5E5B A;  5CNX A;  1WKM A;  2MAT A;  4IU6 A;  4U1B A;  3IG4 A;  1XNZ A;  4RGZ 1;  2Q95 A;  2Q94 A;  3PEB A;  1C23 A;  2Q96 A;  1YVM A;  3Q6D A;  4U73 A;  4U75 A;  2GGC A;  2GU7 A;  4IF7 A;  4U69 A;  2GU5 A;  4PV4 A;  4A6V A;  1C22 A;  2NQ6 A;  3BIP A;  5FCF A;  1WY2 A;  2V6C A;  2BH3 A;  1WBQ A;  2BHC A;  1R58 A;  3QOC A;  2NQ7 A;  4FLL A;  1QXY A;  1YJ3 A;  2V3Z A;  1WLR A;  1QXW A;  1YW8 A;  4IKS A;  1WN1 A;  2GG2 A; 
#chains in the Genus database with same CATH topology
 2DFI A;  3CTZ A;  4U76 A;  1MAT A;  5CDL A;  1C27 A;  3RVA A;  1R5G A;  4S01 A;  3IL0 A;  3L24 A;  4U6C A;  1WL6 A;  2BHD A;  5CLS A;  3TB5 A;  4S00 A;  2P98 A;  2Q92 A;  2BWW A;  3FMQ A;  2OKN A;  1O0X A;  4IDY A;  4PNC A;  3CB6 A;  4FKC A;  3IU7 A;  4EGE A;  5E2C A;  1W7V A;  2BWY A;  5JFR A;  2EVC A;  3ROR A;  2GU6 A;  5D6E A;  2EVM A;  2BHB A;  4OOK A;  5D6F A;  4R60 A;  4ZWU A;  4Z7M A;  3CB5 A;  5JHU A;  2B3K A;  4ZWO A;  1M35 A;  4IKU A;  2GGB A;  3TAV A;  4U6J A;  3O5V A;  4RZY A;  2BHA A;  1XGM A;  1XGN A;  4FO8 A;  1XGS A;  3MX6 A;  4IKR A;  1QZY A;  1C21 A;  2B3L A;  2EA2 A;  4FLK A;  2GU4 A;  4FLI A;  2GG7 A;  3FM3 A;  2ADU A;  5CDV A;  1B59 A;  1WL9 A;  2BB7 A;  2GTX A;  3D27 A;  1PV9 A;  2B3H A;  2GG0 A;  3BIT A;  2GA2 A;  1BN5 A;  2EVO A;  1Y1N A;  2GG3 A;  4ZNG A;  2GG8 A;  5JI6 A;  2GG5 A;  4KM3 A;  3PN9 A;  4U70 A;  4HXX A;  1QXZ A;  2IW2 A;  2OAZ A;  4U71 A;  2Q8K A;  3S6B A;  1A16 A;  1C24 A;  1XGO A;  5CDE A;  3PKB A;  3MAT A;  2HOW A;  3PKD A;  1R5H A;  2V3Y A;  3BIQ A;  2GZ5 A;  3MR1 A;  1JAW A;  4FO7 A;  4MAT A;  3OOO A;  5CE6 A;  5CIK A;  3I7M A;  4U6Z A;  4FLJ A;  3PKE A;  1N51 A;  4S2R P;  4QR8 A;  1KQ0 A;  4B28 A;  4S2T P;  4JUQ A;  2BWT A;  3PKC A;  1KQ9 A;  2EA4 A;  3FMR A;  4A6W A;  4IEC A;  3PKA A;  2BWX A;  2BWU A;  1YW9 A;  1KP0 A;  1W2M A;  2P9A A;  1BOA A;  2Q93 A;  2BWV A;  3IU8 A;  4RZZ A;  2BWS A;  2G6P A;  4U6W A;  4FUK A;  4IPA A;  5FCH A;  1YW7 A;  2P99 A;  4U6E A;  4ZWP A;  2V3X A;  3OVK A;  1B6A A;  4IKT A;  1CHM A;  3L7G A;  2GG9 A;  2ZSG A;  2BN7 A;  3IU9 A;  5E5B A;  5CNX A;  1WKM A;  2MAT A;  4IU6 A;  4U1B A;  3IG4 A;  1XNZ A;  4RGZ 1;  2Q95 A;  2Q94 A;  3PEB A;  1C23 A;  2Q96 A;  1YVM A;  3Q6D A;  4U73 A;  4U75 A;  2GGC A;  2GU7 A;  4IF7 A;  4U69 A;  2GU5 A;  4PV4 A;  4A6V A;  1C22 A;  2NQ6 A;  3BIP A;  5FCF A;  1WY2 A;  2V6C A;  2BH3 A;  1WBQ A;  2BHC A;  1R58 A;  3QOC A;  2NQ7 A;  4FLL A;  1QXY A;  1YJ3 A;  2V3Z A;  1WLR A;  1QXW A;  1YW8 A;  4IKS A;  1WN1 A;  2GG2 A; 
#chains in the Genus database with same CATH homology
 2DFI A;  3CTZ A;  4U76 A;  1MAT A;  5CDL A;  1C27 A;  3RVA A;  1R5G A;  4S01 A;  3IL0 A;  3L24 A;  4U6C A;  1WL6 A;  2BHD A;  5CLS A;  3TB5 A;  4S00 A;  2P98 A;  2Q92 A;  2BWW A;  3FMQ A;  2OKN A;  1O0X A;  4IDY A;  4PNC A;  3CB6 A;  4FKC A;  3IU7 A;  4EGE A;  5E2C A;  1W7V A;  2BWY A;  5JFR A;  2EVC A;  3ROR A;  2GU6 A;  5D6E A;  2EVM A;  2BHB A;  4OOK A;  5D6F A;  4R60 A;  4ZWU A;  4Z7M A;  3CB5 A;  5JHU A;  2B3K A;  4ZWO A;  1M35 A;  4IKU A;  2GGB A;  3TAV A;  4U6J A;  3O5V A;  4RZY A;  2BHA A;  1XGM A;  1XGN A;  4FO8 A;  1XGS A;  3MX6 A;  4IKR A;  1QZY A;  1C21 A;  2B3L A;  2EA2 A;  4FLK A;  2GU4 A;  4FLI A;  2GG7 A;  3FM3 A;  2ADU A;  5CDV A;  1B59 A;  1WL9 A;  2BB7 A;  2GTX A;  3D27 A;  1PV9 A;  2B3H A;  2GG0 A;  3BIT A;  2GA2 A;  1BN5 A;  2EVO A;  1Y1N A;  2GG3 A;  4ZNG A;  2GG8 A;  5JI6 A;  2GG5 A;  4KM3 A;  3PN9 A;  4U70 A;  4HXX A;  1QXZ A;  2IW2 A;  2OAZ A;  4U71 A;  2Q8K A;  3S6B A;  1A16 A;  1C24 A;  1XGO A;  5CDE A;  3PKB A;  3MAT A;  2HOW A;  3PKD A;  1R5H A;  2V3Y A;  3BIQ A;  2GZ5 A;  3MR1 A;  1JAW A;  4FO7 A;  4MAT A;  3OOO A;  5CE6 A;  5CIK A;  3I7M A;  4U6Z A;  4FLJ A;  3PKE A;  1N51 A;  4S2R P;  4QR8 A;  1KQ0 A;  4B28 A;  4S2T P;  4JUQ A;  2BWT A;  3PKC A;  1KQ9 A;  2EA4 A;  3FMR A;  4A6W A;  4IEC A;  3PKA A;  2BWX A;  2BWU A;  1YW9 A;  1KP0 A;  1W2M A;  2P9A A;  1BOA A;  2Q93 A;  2BWV A;  3IU8 A;  4RZZ A;  2BWS A;  2G6P A;  4U6W A;  4FUK A;  4IPA A;  5FCH A;  1YW7 A;  2P99 A;  4U6E A;  4ZWP A;  2V3X A;  3OVK A;  1B6A A;  4IKT A;  1CHM A;  3L7G A;  2GG9 A;  2ZSG A;  2BN7 A;  3IU9 A;  5E5B A;  5CNX A;  1WKM A;  2MAT A;  4IU6 A;  4U1B A;  3IG4 A;  1XNZ A;  4RGZ 1;  2Q95 A;  2Q94 A;  3PEB A;  1C23 A;  2Q96 A;  1YVM A;  3Q6D A;  4U73 A;  4U75 A;  2GGC A;  2GU7 A;  4IF7 A;  4U69 A;  2GU5 A;  4PV4 A;  4A6V A;  1C22 A;  2NQ6 A;  3BIP A;  5FCF A;  1WY2 A;  2V6C A;  2BH3 A;  1WBQ A;  2BHC A;  1R58 A;  3QOC A;  2NQ7 A;  4FLL A;  1QXY A;  1YJ3 A;  2V3Z A;  1WLR A;  1QXW A;  1YW8 A;  4IKS A;  1WN1 A;  2GG2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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