5CDEA

R372a mutant of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
398
structure length
398
Chain Sequence
STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVALEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
rcsb
source organism Xanthomonas campestris
total genus 133
structure length 398
sequence length 398
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdeA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdeA02
3MATA 4EGEA 4S00A 4QR8A 2NQ7A 2Q8KA 1XGSA 2EVCA 2B3KA 1YJ3A 4A6VA 2BWVA 4IDYA 2GG7A 1XNZA 2NQ6A 4PNCA 2Q94A 3IU8A 2GTXA 2Q92A 2BH3A 3FM3A 1WKMA 5JFRA 3BIPA 4KM3A 2BN7A 2P99A 3I7MA 2BWYA 3TB5A 4U71A 3L24A 2EVOA 3OVKA 2GZ5A 4S2TP 1R5HA 1CHMA 1XGMA 4IU6A 4U70A 1C27A 2V3ZA 1R5GA 2EVMA 4ZWPA 4IKRA 3RORA 1W2MA 2BWTA 3PKEA 5CDLA 4FO7A 2EA2A 1N51A 4IKSA 2P9AA 2V6CA 2GGCA 2IW2A 4FUKA 2ZSGA 2GG5A 4ZWOA 1M35A 1WLRA 2EA4A 2DFIA 4U6EA 1PV9A 3O5VA 1YW8A 2GU7A 4R60A 3FMQA 1JAWA 3D27A 3PKBA 2MATA 4Z7MA 1WN1A 3PKCA 5CDEA 2GG0A 5FCFA 1MATA 1WBQA 4ZWUA 4IKUA 4IPAA 5D6EA 2ADUA 2BWUA 2B3HA 3L7GA 1O0XA 4RZZA 3IU7A 2BB7A 4U6ZA 3MX6A 1WY2A 3QOCA 4RGZ1 2GG8A 4A6WA 1WL6A 2P98A 1YVMA 4B28A 2V3YA 5JHUA 2Q95A 3MR1A 1QXYA 3IG4A 2Q93A 3PKDA 4FKCA 4HXXA 1C23A 5CIKA 2BHBA 1B6AA 1C22A 2OKNA 5E2CA 1R58A 4RZYA 3Q6DA 4FLIA 1KQ9A 5FCHA 3IU9A 4OOKA 3BIQA 3S6BA 3PEBA 2BHDA 3TAVA 2BWSA 1B59A 4ZNGA 3BITA 1C24A 5CE6A 2BWXA 4IECA 2V3XA 1XGOA 1YW7A 4MATA 4JUQA 2GG9A 3CTZA 4IKTA 4U6CA 1C21A 1QZYA 4S01A 3PN9A 2BWWA 1W7VA 2GU5A 1KP0A 2Q96A 4FLKA 3FMRA 4U1BA 5D6FA 4FLJA 2OAZA 2GU4A 3CB6A 2BHCA 1XGNA 2G6PA 5E5BA 3CB5A 3IL0A 2B3LA 4FLLA 4U69A 4U73A 4U76A 3OOOA 4U6JA 5JI6A 2BHAA 4IF7A 1BN5A 5CNXA 5CLSA 1A16A 3PKAA 2GU6A 1WL9A 1QXWA 1BOAA 1YW9A 1KQ0A 2HOWA 2GG3A 3RVAA 4S2RP 4FO8A 4PV4A 2GGBA 4U6WA 1QXZA 2GA2A 4U75A 1Y1NA 5CDVA 2GG2A
chains in the Genus database with same CATH superfamily
3MATA 4EGEA 4S00A 4QR8A 2NQ7A 2Q8KA 1XGSA 2EVCA 2B3KA 1YJ3A 4A6VA 2BWVA 4IDYA 2GG7A 1XNZA 2NQ6A 4PNCA 2Q94A 3IU8A 2GTXA 2Q92A 2BH3A 3FM3A 1WKMA 5JFRA 3BIPA 4KM3A 2BN7A 2P99A 3I7MA 2BWYA 3TB5A 4U71A 3L24A 2EVOA 3OVKA 2GZ5A 4S2TP 1R5HA 1CHMA 1XGMA 4IU6A 4U70A 1C27A 2V3ZA 1R5GA 2EVMA 4ZWPA 4IKRA 3RORA 1W2MA 2BWTA 3PKEA 5CDLA 4FO7A 2EA2A 1N51A 4IKSA 2P9AA 2V6CA 2GGCA 2IW2A 4FUKA 2ZSGA 2GG5A 4ZWOA 1M35A 1WLRA 2EA4A 2DFIA 4U6EA 1PV9A 3O5VA 1YW8A 2GU7A 4R60A 3FMQA 1JAWA 3D27A 3PKBA 2MATA 4Z7MA 1WN1A 3PKCA 5CDEA 2GG0A 5FCFA 1MATA 1WBQA 4ZWUA 4IKUA 4IPAA 5D6EA 2ADUA 2BWUA 2B3HA 3L7GA 1O0XA 4RZZA 3IU7A 2BB7A 4U6ZA 3MX6A 1WY2A 3QOCA 4RGZ1 2GG8A 4A6WA 1WL6A 2P98A 1YVMA 4B28A 2V3YA 5JHUA 2Q95A 3MR1A 1QXYA 3IG4A 2Q93A 3PKDA 4FKCA 4HXXA 1C23A 5CIKA 2BHBA 1B6AA 1C22A 2OKNA 5E2CA 1R58A 4RZYA 3Q6DA 4FLIA 1KQ9A 5FCHA 3IU9A 4OOKA 3BIQA 3S6BA 3PEBA 2BHDA 3TAVA 2BWSA 1B59A 4ZNGA 3BITA 1C24A 5CE6A 2BWXA 4IECA 2V3XA 1XGOA 1YW7A 4MATA 4JUQA 2GG9A 3CTZA 4IKTA 4U6CA 1C21A 1QZYA 4S01A 3PN9A 2BWWA 1W7VA 2GU5A 1KP0A 2Q96A 4FLKA 3FMRA 4U1BA 5D6FA 4FLJA 2OAZA 2GU4A 3CB6A 2BHCA 1XGNA 2G6PA 5E5BA 3CB5A 3IL0A 2B3LA 4FLLA 4U69A 4U73A 4U76A 3OOOA 4U6JA 5JI6A 2BHAA 4IF7A 1BN5A 5CNXA 5CLSA 1A16A 3PKAA 2GU6A 1WL9A 1QXWA 1BOAA 1YW9A 1KQ0A 2HOWA 2GG3A 3RVAA 4S2RP 4FO8A 4PV4A 2GGBA 4U6WA 1QXZA 2GA2A 4U75A 1Y1NA 5CDVA 2GG2A
chains in the Genus database with same CATH topology
3MATA 4EGEA 4S00A 4QR8A 2NQ7A 2Q8KA 1XGSA 2EVCA 2B3KA 1YJ3A 4A6VA 2BWVA 4IDYA 2GG7A 1XNZA 2NQ6A 4PNCA 2Q94A 3IU8A 2GTXA 2Q92A 2BH3A 3FM3A 1WKMA 5JFRA 3BIPA 4KM3A 2BN7A 2P99A 3I7MA 2BWYA 3TB5A 4U71A 3L24A 2EVOA 3OVKA 2GZ5A 4S2TP 1R5HA 1CHMA 1XGMA 4IU6A 4U70A 1C27A 2V3ZA 1R5GA 2EVMA 4ZWPA 4IKRA 3RORA 1W2MA 2BWTA 3PKEA 5CDLA 4FO7A 2EA2A 1N51A 4IKSA 2P9AA 2V6CA 2GGCA 2IW2A 4FUKA 2ZSGA 2GG5A 4ZWOA 1M35A 1WLRA 2EA4A 2DFIA 4U6EA 1PV9A 3O5VA 1YW8A 2GU7A 4R60A 3FMQA 1JAWA 3D27A 3PKBA 2MATA 4Z7MA 1WN1A 3PKCA 5CDEA 2GG0A 5FCFA 1MATA 1WBQA 4ZWUA 4IKUA 4IPAA 5D6EA 2ADUA 2BWUA 2B3HA 3L7GA 1O0XA 4RZZA 3IU7A 2BB7A 4U6ZA 3MX6A 1WY2A 3QOCA 4RGZ1 2GG8A 4A6WA 1WL6A 2P98A 1YVMA 4B28A 2V3YA 5JHUA 2Q95A 3MR1A 1QXYA 3IG4A 2Q93A 3PKDA 4FKCA 4HXXA 1C23A 5CIKA 2BHBA 1B6AA 1C22A 2OKNA 5E2CA 1R58A 4RZYA 3Q6DA 4FLIA 1KQ9A 5FCHA 3IU9A 4OOKA 3BIQA 3S6BA 3PEBA 2BHDA 3TAVA 2BWSA 1B59A 4ZNGA 3BITA 1C24A 5CE6A 2BWXA 4IECA 2V3XA 1XGOA 1YW7A 4MATA 4JUQA 2GG9A 3CTZA 4IKTA 4U6CA 1C21A 1QZYA 4S01A 3PN9A 2BWWA 1W7VA 2GU5A 1KP0A 2Q96A 4FLKA 3FMRA 4U1BA 5D6FA 4FLJA 2OAZA 2GU4A 3CB6A 2BHCA 1XGNA 2G6PA 5E5BA 3CB5A 3IL0A 2B3LA 4FLLA 4U69A 4U73A 4U76A 3OOOA 4U6JA 5JI6A 2BHAA 4IF7A 1BN5A 5CNXA 5CLSA 1A16A 3PKAA 2GU6A 1WL9A 1QXWA 1BOAA 1YW9A 1KQ0A 2HOWA 2GG3A 3RVAA 4S2RP 4FO8A 4PV4A 2GGBA 4U6WA 1QXZA 2GA2A 4U75A 1Y1NA 5CDVA 2GG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAT A;  4EGE A;  4S00 A;  4QR8 A;  2NQ7 A;  2Q8K A;  1XGS A;  2EVC A;  2B3K A;  1YJ3 A;  4A6V A;  2BWV A;  4IDY A;  2GG7 A;  1XNZ A;  2NQ6 A;  4PNC A;  2Q94 A;  3IU8 A;  2GTX A;  2Q92 A;  2BH3 A;  3FM3 A;  1WKM A;  5JFR A;  3BIP A;  4KM3 A;  2BN7 A;  2P99 A;  3I7M A;  2BWY A;  3TB5 A;  4U71 A;  3L24 A;  2EVO A;  3OVK A;  2GZ5 A;  4S2T P;  1R5H A;  1CHM A;  1XGM A;  4IU6 A;  4U70 A;  1C27 A;  2V3Z A;  1R5G A;  2EVM A;  4ZWP A;  4IKR A;  3ROR A;  1W2M A;  2BWT A;  3PKE A;  5CDL A;  4FO7 A;  2EA2 A;  1N51 A;  4IKS A;  2P9A A;  2V6C A;  2GGC A;  2IW2 A;  4FUK A;  2ZSG A;  2GG5 A;  4ZWO A;  1M35 A;  1WLR A;  2EA4 A;  2DFI A;  4U6E A;  1PV9 A;  3O5V A;  1YW8 A;  2GU7 A;  4R60 A;  3FMQ A;  1JAW A;  3D27 A;  3PKB A;  2MAT A;  4Z7M A;  1WN1 A;  3PKC A;  5CDE A;  2GG0 A;  5FCF A;  1MAT A;  1WBQ A;  4ZWU A;  4IKU A;  4IPA A;  5D6E A;  2ADU A;  2BWU A;  2B3H A;  3L7G A;  1O0X A;  4RZZ A;  3IU7 A;  2BB7 A;  4U6Z A;  3MX6 A;  1WY2 A;  3QOC A;  4RGZ 1;  2GG8 A;  4A6W A;  1WL6 A;  2P98 A;  1YVM A;  4B28 A;  2V3Y A;  5JHU A;  2Q95 A;  3MR1 A;  1QXY A;  3IG4 A;  2Q93 A;  3PKD A;  4FKC A;  4HXX A;  1C23 A;  5CIK A;  2BHB A;  1B6A A;  1C22 A;  2OKN A;  5E2C A;  1R58 A;  4RZY A;  3Q6D A;  4FLI A;  1KQ9 A;  5FCH A;  3IU9 A;  4OOK A;  3BIQ A;  3S6B A;  3PEB A;  2BHD A;  3TAV A;  2BWS A;  1B59 A;  4ZNG A;  3BIT A;  1C24 A;  5CE6 A;  2BWX A;  4IEC A;  2V3X A;  1XGO A;  1YW7 A;  4MAT A;  4JUQ A;  2GG9 A;  3CTZ A;  4IKT A;  4U6C A;  1C21 A;  1QZY A;  4S01 A;  3PN9 A;  2BWW A;  1W7V A;  2GU5 A;  1KP0 A;  2Q96 A;  4FLK A;  3FMR A;  4U1B A;  5D6F A;  4FLJ A;  2OAZ A;  2GU4 A;  3CB6 A;  2BHC A;  1XGN A;  2G6P A;  5E5B A;  3CB5 A;  3IL0 A;  2B3L A;  4FLL A;  4U69 A;  4U73 A;  4U76 A;  3OOO A;  4U6J A;  5JI6 A;  2BHA A;  4IF7 A;  1BN5 A;  5CNX A;  5CLS A;  1A16 A;  3PKA A;  2GU6 A;  1WL9 A;  1QXW A;  1BOA A;  1YW9 A;  1KQ0 A;  2HOW A;  2GG3 A;  3RVA A;  4S2R P;  4FO8 A;  4PV4 A;  2GGB A;  4U6W A;  1QXZ A;  2GA2 A;  4U75 A;  1Y1N A;  5CDV A;  2GG2 A; 
#chains in the Genus database with same CATH topology
 3MAT A;  4EGE A;  4S00 A;  4QR8 A;  2NQ7 A;  2Q8K A;  1XGS A;  2EVC A;  2B3K A;  1YJ3 A;  4A6V A;  2BWV A;  4IDY A;  2GG7 A;  1XNZ A;  2NQ6 A;  4PNC A;  2Q94 A;  3IU8 A;  2GTX A;  2Q92 A;  2BH3 A;  3FM3 A;  1WKM A;  5JFR A;  3BIP A;  4KM3 A;  2BN7 A;  2P99 A;  3I7M A;  2BWY A;  3TB5 A;  4U71 A;  3L24 A;  2EVO A;  3OVK A;  2GZ5 A;  4S2T P;  1R5H A;  1CHM A;  1XGM A;  4IU6 A;  4U70 A;  1C27 A;  2V3Z A;  1R5G A;  2EVM A;  4ZWP A;  4IKR A;  3ROR A;  1W2M A;  2BWT A;  3PKE A;  5CDL A;  4FO7 A;  2EA2 A;  1N51 A;  4IKS A;  2P9A A;  2V6C A;  2GGC A;  2IW2 A;  4FUK A;  2ZSG A;  2GG5 A;  4ZWO A;  1M35 A;  1WLR A;  2EA4 A;  2DFI A;  4U6E A;  1PV9 A;  3O5V A;  1YW8 A;  2GU7 A;  4R60 A;  3FMQ A;  1JAW A;  3D27 A;  3PKB A;  2MAT A;  4Z7M A;  1WN1 A;  3PKC A;  5CDE A;  2GG0 A;  5FCF A;  1MAT A;  1WBQ A;  4ZWU A;  4IKU A;  4IPA A;  5D6E A;  2ADU A;  2BWU A;  2B3H A;  3L7G A;  1O0X A;  4RZZ A;  3IU7 A;  2BB7 A;  4U6Z A;  3MX6 A;  1WY2 A;  3QOC A;  4RGZ 1;  2GG8 A;  4A6W A;  1WL6 A;  2P98 A;  1YVM A;  4B28 A;  2V3Y A;  5JHU A;  2Q95 A;  3MR1 A;  1QXY A;  3IG4 A;  2Q93 A;  3PKD A;  4FKC A;  4HXX A;  1C23 A;  5CIK A;  2BHB A;  1B6A A;  1C22 A;  2OKN A;  5E2C A;  1R58 A;  4RZY A;  3Q6D A;  4FLI A;  1KQ9 A;  5FCH A;  3IU9 A;  4OOK A;  3BIQ A;  3S6B A;  3PEB A;  2BHD A;  3TAV A;  2BWS A;  1B59 A;  4ZNG A;  3BIT A;  1C24 A;  5CE6 A;  2BWX A;  4IEC A;  2V3X A;  1XGO A;  1YW7 A;  4MAT A;  4JUQ A;  2GG9 A;  3CTZ A;  4IKT A;  4U6C A;  1C21 A;  1QZY A;  4S01 A;  3PN9 A;  2BWW A;  1W7V A;  2GU5 A;  1KP0 A;  2Q96 A;  4FLK A;  3FMR A;  4U1B A;  5D6F A;  4FLJ A;  2OAZ A;  2GU4 A;  3CB6 A;  2BHC A;  1XGN A;  2G6P A;  5E5B A;  3CB5 A;  3IL0 A;  2B3L A;  4FLL A;  4U69 A;  4U73 A;  4U76 A;  3OOO A;  4U6J A;  5JI6 A;  2BHA A;  4IF7 A;  1BN5 A;  5CNX A;  5CLS A;  1A16 A;  3PKA A;  2GU6 A;  1WL9 A;  1QXW A;  1BOA A;  1YW9 A;  1KQ0 A;  2HOW A;  2GG3 A;  3RVA A;  4S2R P;  4FO8 A;  4PV4 A;  2GGB A;  4U6W A;  1QXZ A;  2GA2 A;  4U75 A;  1Y1N A;  5CDV A;  2GG2 A; 
#chains in the Genus database with same CATH homology
 3MAT A;  4EGE A;  4S00 A;  4QR8 A;  2NQ7 A;  2Q8K A;  1XGS A;  2EVC A;  2B3K A;  1YJ3 A;  4A6V A;  2BWV A;  4IDY A;  2GG7 A;  1XNZ A;  2NQ6 A;  4PNC A;  2Q94 A;  3IU8 A;  2GTX A;  2Q92 A;  2BH3 A;  3FM3 A;  1WKM A;  5JFR A;  3BIP A;  4KM3 A;  2BN7 A;  2P99 A;  3I7M A;  2BWY A;  3TB5 A;  4U71 A;  3L24 A;  2EVO A;  3OVK A;  2GZ5 A;  4S2T P;  1R5H A;  1CHM A;  1XGM A;  4IU6 A;  4U70 A;  1C27 A;  2V3Z A;  1R5G A;  2EVM A;  4ZWP A;  4IKR A;  3ROR A;  1W2M A;  2BWT A;  3PKE A;  5CDL A;  4FO7 A;  2EA2 A;  1N51 A;  4IKS A;  2P9A A;  2V6C A;  2GGC A;  2IW2 A;  4FUK A;  2ZSG A;  2GG5 A;  4ZWO A;  1M35 A;  1WLR A;  2EA4 A;  2DFI A;  4U6E A;  1PV9 A;  3O5V A;  1YW8 A;  2GU7 A;  4R60 A;  3FMQ A;  1JAW A;  3D27 A;  3PKB A;  2MAT A;  4Z7M A;  1WN1 A;  3PKC A;  5CDE A;  2GG0 A;  5FCF A;  1MAT A;  1WBQ A;  4ZWU A;  4IKU A;  4IPA A;  5D6E A;  2ADU A;  2BWU A;  2B3H A;  3L7G A;  1O0X A;  4RZZ A;  3IU7 A;  2BB7 A;  4U6Z A;  3MX6 A;  1WY2 A;  3QOC A;  4RGZ 1;  2GG8 A;  4A6W A;  1WL6 A;  2P98 A;  1YVM A;  4B28 A;  2V3Y A;  5JHU A;  2Q95 A;  3MR1 A;  1QXY A;  3IG4 A;  2Q93 A;  3PKD A;  4FKC A;  4HXX A;  1C23 A;  5CIK A;  2BHB A;  1B6A A;  1C22 A;  2OKN A;  5E2C A;  1R58 A;  4RZY A;  3Q6D A;  4FLI A;  1KQ9 A;  5FCH A;  3IU9 A;  4OOK A;  3BIQ A;  3S6B A;  3PEB A;  2BHD A;  3TAV A;  2BWS A;  1B59 A;  4ZNG A;  3BIT A;  1C24 A;  5CE6 A;  2BWX A;  4IEC A;  2V3X A;  1XGO A;  1YW7 A;  4MAT A;  4JUQ A;  2GG9 A;  3CTZ A;  4IKT A;  4U6C A;  1C21 A;  1QZY A;  4S01 A;  3PN9 A;  2BWW A;  1W7V A;  2GU5 A;  1KP0 A;  2Q96 A;  4FLK A;  3FMR A;  4U1B A;  5D6F A;  4FLJ A;  2OAZ A;  2GU4 A;  3CB6 A;  2BHC A;  1XGN A;  2G6P A;  5E5B A;  3CB5 A;  3IL0 A;  2B3L A;  4FLL A;  4U69 A;  4U73 A;  4U76 A;  3OOO A;  4U6J A;  5JI6 A;  2BHA A;  4IF7 A;  1BN5 A;  5CNX A;  5CLS A;  1A16 A;  3PKA A;  2GU6 A;  1WL9 A;  1QXW A;  1BOA A;  1YW9 A;  1KQ0 A;  2HOW A;  2GG3 A;  3RVA A;  4S2R P;  4FO8 A;  4PV4 A;  2GGB A;  4U6W A;  1QXZ A;  2GA2 A;  4U75 A;  1Y1N A;  5CDV A;  2GG2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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