5CDEA

R372a mutant of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
398
structure length
398
Chain Sequence
b'STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVALEDHFYVTDTGAQWFTPPSVAIDQPFA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
rcsb
source organism Xanthomonas campestris
molecule tags Hydrolase
total genus 133
structure length 398
sequence length 398
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdeA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdeA02
4PNCA 3D27A 4FKCA 2GU5A 4FO7A 3FMQA 3TB5A 4S01A 2BWYA 2BHBA 3MATA 1XGMA 4FLJA 2GG9A 4RZYA 2BH3A 4IKRA 1KQ9A 4U6CA 3BIQA 2GG3A 1Y1NA 2BWTA 1C21A 5CNXA 2GTXA 3PKEA 4IF7A 3IU8A 4U1BA 2EVOA 2GGBA 2BHCA 1CHMA 2BHDA 2NQ7A 2Q94A 4S2RP 2ZSGA 4U73A 2GG0A 4U70A 1O0XA 2BHAA 2BWVA 2V3XA 5CDVA 3L7GA 2BWWA 4IPAA 4U69A 5CIKA 1YW7A 1M35A 3CB6A 2GG7A 3BIPA 1YW8A 1XGNA 2BWSA 2V6CA 4S00A 1R5HA 1QXZA 3FM3A 3OOOA 4FUKA 2V3YA 4OOKA 1KP0A 1XNZA 3O5VA 4RZZA 4FLIA 4U6JA 4IU6A 2OAZA 2GU7A 2B3HA 4JUQA 1XGOA 2ADUA 1C23A 1R5GA 1A16A 2GG2A 2B3LA 1JAWA 2P98A 4U6WA 2OKNA 1WN1A 4A6VA 1QXWA 2BB7A 2HOWA 4S2TP 4KM3A 3PEBA 1N51A 3TAVA 3RORA 5JFRA 3Q6DA 5CE6A 5CLSA 1QZYA 2Q93A 2G6PA 3MR1A 2EVMA 1YJ3A 3QOCA 3RVAA 4EGEA 3PKAA 4IKUA 2EVCA 3IL0A 4PV4A 2IW2A 3IU7A 1YW9A 4FLLA 3L24A 5FCHA 4IDYA 2BWXA 4U6EA 1W2MA 3MX6A 5JI6A 4B28A 2Q95A 5CDEA 3I7MA 4ZWPA 1BN5A 5E5BA 1C27A 2Q92A 5D6EA 2BWUA 4IKSA 2P99A 1WLRA 1MATA 4RGZ1 2GGCA 4U75A 1R58A 4ZWUA 1QXYA 2GA2A 4IKTA 3CTZA 2NQ6A 1B59A 4U6ZA 3PKDA 3OVKA 2V3ZA 1YVMA 2GG8A 3CB5A 1WL6A 5JHUA 3IG4A 1C24A 3FMRA 2EA2A 2GG5A 4R60A 1WBQA 4MATA 2B3KA 1WKMA 2MATA 4HXXA 4U76A 1BOAA 1WL9A 3BITA 4ZNGA 3S6BA 2GZ5A 4IECA 4U71A 2BN7A 2DFIA 3PKCA 5D6FA 4QR8A 3PN9A 1C22A 2GU6A 2Q96A 2EA4A 4FO8A 1WY2A 5FCFA 2P9AA 3IU9A 2Q8KA 1KQ0A 4A6WA 4Z7MA 4FLKA 4ZWOA 5CDLA 2GU4A 5E2CA 1B6AA 1PV9A 3PKBA 1XGSA 1W7VA
chains in the Genus database with same CATH superfamily
4PNCA 3D27A 4FKCA 2GU5A 4FO7A 3FMQA 3TB5A 4S01A 2BWYA 2BHBA 3MATA 1XGMA 4FLJA 2GG9A 4RZYA 2BH3A 4IKRA 1KQ9A 4U6CA 3BIQA 2GG3A 1Y1NA 2BWTA 1C21A 5CNXA 2GTXA 3PKEA 4IF7A 3IU8A 4U1BA 2EVOA 2GGBA 2BHCA 1CHMA 2BHDA 2NQ7A 2Q94A 4S2RP 2ZSGA 4U73A 2GG0A 4U70A 1O0XA 2BHAA 2BWVA 2V3XA 5CDVA 3L7GA 2BWWA 4IPAA 4U69A 5CIKA 1YW7A 1M35A 3CB6A 2GG7A 3BIPA 1YW8A 1XGNA 2BWSA 2V6CA 4S00A 1R5HA 1QXZA 3FM3A 3OOOA 4FUKA 2V3YA 4OOKA 1KP0A 1XNZA 3O5VA 4RZZA 4FLIA 4U6JA 4IU6A 2OAZA 2GU7A 2B3HA 4JUQA 1XGOA 2ADUA 1C23A 1R5GA 1A16A 2GG2A 2B3LA 1JAWA 2P98A 4U6WA 2OKNA 1WN1A 4A6VA 1QXWA 2BB7A 2HOWA 4S2TP 4KM3A 3PEBA 1N51A 3TAVA 3RORA 5JFRA 3Q6DA 5CE6A 5CLSA 1QZYA 2Q93A 2G6PA 3MR1A 2EVMA 1YJ3A 3QOCA 3RVAA 4EGEA 3PKAA 4IKUA 2EVCA 3IL0A 4PV4A 2IW2A 3IU7A 1YW9A 4FLLA 3L24A 5FCHA 4IDYA 2BWXA 4U6EA 1W2MA 3MX6A 5JI6A 4B28A 2Q95A 5CDEA 3I7MA 4ZWPA 1BN5A 5E5BA 1C27A 2Q92A 5D6EA 2BWUA 4IKSA 2P99A 1WLRA 1MATA 4RGZ1 2GGCA 4U75A 1R58A 4ZWUA 1QXYA 2GA2A 4IKTA 3CTZA 2NQ6A 1B59A 4U6ZA 3PKDA 3OVKA 2V3ZA 1YVMA 2GG8A 3CB5A 1WL6A 5JHUA 3IG4A 1C24A 3FMRA 2EA2A 2GG5A 4R60A 1WBQA 4MATA 2B3KA 1WKMA 2MATA 4HXXA 4U76A 1BOAA 1WL9A 3BITA 4ZNGA 3S6BA 2GZ5A 4IECA 4U71A 2BN7A 2DFIA 3PKCA 5D6FA 4QR8A 3PN9A 1C22A 2GU6A 2Q96A 2EA4A 4FO8A 1WY2A 5FCFA 2P9AA 3IU9A 2Q8KA 1KQ0A 4A6WA 4Z7MA 4FLKA 4ZWOA 5CDLA 2GU4A 5E2CA 1B6AA 1PV9A 3PKBA 1XGSA 1W7VA
chains in the Genus database with same CATH topology
4PNCA 3D27A 4FKCA 2GU5A 4FO7A 3FMQA 3TB5A 4S01A 2BWYA 2BHBA 3MATA 1XGMA 4FLJA 2GG9A 4RZYA 2BH3A 4IKRA 1KQ9A 4U6CA 3BIQA 2GG3A 1Y1NA 2BWTA 1C21A 5CNXA 2GTXA 3PKEA 4IF7A 3IU8A 4U1BA 2EVOA 2GGBA 2BHCA 1CHMA 2BHDA 2NQ7A 2Q94A 4S2RP 2ZSGA 4U73A 2GG0A 4U70A 1O0XA 2BHAA 2BWVA 2V3XA 5CDVA 3L7GA 2BWWA 4IPAA 4U69A 5CIKA 1YW7A 1M35A 3CB6A 2GG7A 3BIPA 1YW8A 1XGNA 2BWSA 2V6CA 4S00A 1R5HA 1QXZA 3FM3A 3OOOA 4FUKA 2V3YA 4OOKA 1KP0A 1XNZA 3O5VA 4RZZA 4FLIA 4U6JA 4IU6A 2OAZA 2GU7A 2B3HA 4JUQA 1XGOA 2ADUA 1C23A 1R5GA 1A16A 2GG2A 2B3LA 1JAWA 2P98A 4U6WA 2OKNA 1WN1A 4A6VA 1QXWA 2BB7A 2HOWA 4S2TP 4KM3A 3PEBA 1N51A 3TAVA 3RORA 5JFRA 3Q6DA 5CE6A 5CLSA 1QZYA 2Q93A 2G6PA 3MR1A 2EVMA 1YJ3A 3QOCA 3RVAA 4EGEA 3PKAA 4IKUA 2EVCA 3IL0A 4PV4A 2IW2A 3IU7A 1YW9A 4FLLA 3L24A 5FCHA 4IDYA 2BWXA 4U6EA 1W2MA 3MX6A 5JI6A 4B28A 2Q95A 5CDEA 3I7MA 4ZWPA 1BN5A 5E5BA 1C27A 2Q92A 5D6EA 2BWUA 4IKSA 2P99A 1WLRA 1MATA 4RGZ1 2GGCA 4U75A 1R58A 4ZWUA 1QXYA 2GA2A 4IKTA 3CTZA 2NQ6A 1B59A 4U6ZA 3PKDA 3OVKA 2V3ZA 1YVMA 2GG8A 3CB5A 1WL6A 5JHUA 3IG4A 1C24A 3FMRA 2EA2A 2GG5A 4R60A 1WBQA 4MATA 2B3KA 1WKMA 2MATA 4HXXA 4U76A 1BOAA 1WL9A 3BITA 4ZNGA 3S6BA 2GZ5A 4IECA 4U71A 2BN7A 2DFIA 3PKCA 5D6FA 4QR8A 3PN9A 1C22A 2GU6A 2Q96A 2EA4A 4FO8A 1WY2A 5FCFA 2P9AA 3IU9A 2Q8KA 1KQ0A 4A6WA 4Z7MA 4FLKA 4ZWOA 5CDLA 2GU4A 5E2CA 1B6AA 1PV9A 3PKBA 1XGSA 1W7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PNC A;  3D27 A;  4FKC A;  2GU5 A;  4FO7 A;  3FMQ A;  3TB5 A;  4S01 A;  2BWY A;  2BHB A;  3MAT A;  1XGM A;  4FLJ A;  2GG9 A;  4RZY A;  2BH3 A;  4IKR A;  1KQ9 A;  4U6C A;  3BIQ A;  2GG3 A;  1Y1N A;  2BWT A;  1C21 A;  5CNX A;  2GTX A;  3PKE A;  4IF7 A;  3IU8 A;  4U1B A;  2EVO A;  2GGB A;  2BHC A;  1CHM A;  2BHD A;  2NQ7 A;  2Q94 A;  4S2R P;  2ZSG A;  4U73 A;  2GG0 A;  4U70 A;  1O0X A;  2BHA A;  2BWV A;  2V3X A;  5CDV A;  3L7G A;  2BWW A;  4IPA A;  4U69 A;  5CIK A;  1YW7 A;  1M35 A;  3CB6 A;  2GG7 A;  3BIP A;  1YW8 A;  1XGN A;  2BWS A;  2V6C A;  4S00 A;  1R5H A;  1QXZ A;  3FM3 A;  3OOO A;  4FUK A;  2V3Y A;  4OOK A;  1KP0 A;  1XNZ A;  3O5V A;  4RZZ A;  4FLI A;  4U6J A;  4IU6 A;  2OAZ A;  2GU7 A;  2B3H A;  4JUQ A;  1XGO A;  2ADU A;  1C23 A;  1R5G A;  1A16 A;  2GG2 A;  2B3L A;  1JAW A;  2P98 A;  4U6W A;  2OKN A;  1WN1 A;  4A6V A;  1QXW A;  2BB7 A;  2HOW A;  4S2T P;  4KM3 A;  3PEB A;  1N51 A;  3TAV A;  3ROR A;  5JFR A;  3Q6D A;  5CE6 A;  5CLS A;  1QZY A;  2Q93 A;  2G6P A;  3MR1 A;  2EVM A;  1YJ3 A;  3QOC A;  3RVA A;  4EGE A;  3PKA A;  4IKU A;  2EVC A;  3IL0 A;  4PV4 A;  2IW2 A;  3IU7 A;  1YW9 A;  4FLL A;  3L24 A;  5FCH A;  4IDY A;  2BWX A;  4U6E A;  1W2M A;  3MX6 A;  5JI6 A;  4B28 A;  2Q95 A;  5CDE A;  3I7M A;  4ZWP A;  1BN5 A;  5E5B A;  1C27 A;  2Q92 A;  5D6E A;  2BWU A;  4IKS A;  2P99 A;  1WLR A;  1MAT A;  4RGZ 1;  2GGC A;  4U75 A;  1R58 A;  4ZWU A;  1QXY A;  2GA2 A;  4IKT A;  3CTZ A;  2NQ6 A;  1B59 A;  4U6Z A;  3PKD A;  3OVK A;  2V3Z A;  1YVM A;  2GG8 A;  3CB5 A;  1WL6 A;  5JHU A;  3IG4 A;  1C24 A;  3FMR A;  2EA2 A;  2GG5 A;  4R60 A;  1WBQ A;  4MAT A;  2B3K A;  1WKM A;  2MAT A;  4HXX A;  4U76 A;  1BOA A;  1WL9 A;  3BIT A;  4ZNG A;  3S6B A;  2GZ5 A;  4IEC A;  4U71 A;  2BN7 A;  2DFI A;  3PKC A;  5D6F A;  4QR8 A;  3PN9 A;  1C22 A;  2GU6 A;  2Q96 A;  2EA4 A;  4FO8 A;  1WY2 A;  5FCF A;  2P9A A;  3IU9 A;  2Q8K A;  1KQ0 A;  4A6W A;  4Z7M A;  4FLK A;  4ZWO A;  5CDL A;  2GU4 A;  5E2C A;  1B6A A;  1PV9 A;  3PKB A;  1XGS A;  1W7V A; 
#chains in the Genus database with same CATH topology
 4PNC A;  3D27 A;  4FKC A;  2GU5 A;  4FO7 A;  3FMQ A;  3TB5 A;  4S01 A;  2BWY A;  2BHB A;  3MAT A;  1XGM A;  4FLJ A;  2GG9 A;  4RZY A;  2BH3 A;  4IKR A;  1KQ9 A;  4U6C A;  3BIQ A;  2GG3 A;  1Y1N A;  2BWT A;  1C21 A;  5CNX A;  2GTX A;  3PKE A;  4IF7 A;  3IU8 A;  4U1B A;  2EVO A;  2GGB A;  2BHC A;  1CHM A;  2BHD A;  2NQ7 A;  2Q94 A;  4S2R P;  2ZSG A;  4U73 A;  2GG0 A;  4U70 A;  1O0X A;  2BHA A;  2BWV A;  2V3X A;  5CDV A;  3L7G A;  2BWW A;  4IPA A;  4U69 A;  5CIK A;  1YW7 A;  1M35 A;  3CB6 A;  2GG7 A;  3BIP A;  1YW8 A;  1XGN A;  2BWS A;  2V6C A;  4S00 A;  1R5H A;  1QXZ A;  3FM3 A;  3OOO A;  4FUK A;  2V3Y A;  4OOK A;  1KP0 A;  1XNZ A;  3O5V A;  4RZZ A;  4FLI A;  4U6J A;  4IU6 A;  2OAZ A;  2GU7 A;  2B3H A;  4JUQ A;  1XGO A;  2ADU A;  1C23 A;  1R5G A;  1A16 A;  2GG2 A;  2B3L A;  1JAW A;  2P98 A;  4U6W A;  2OKN A;  1WN1 A;  4A6V A;  1QXW A;  2BB7 A;  2HOW A;  4S2T P;  4KM3 A;  3PEB A;  1N51 A;  3TAV A;  3ROR A;  5JFR A;  3Q6D A;  5CE6 A;  5CLS A;  1QZY A;  2Q93 A;  2G6P A;  3MR1 A;  2EVM A;  1YJ3 A;  3QOC A;  3RVA A;  4EGE A;  3PKA A;  4IKU A;  2EVC A;  3IL0 A;  4PV4 A;  2IW2 A;  3IU7 A;  1YW9 A;  4FLL A;  3L24 A;  5FCH A;  4IDY A;  2BWX A;  4U6E A;  1W2M A;  3MX6 A;  5JI6 A;  4B28 A;  2Q95 A;  5CDE A;  3I7M A;  4ZWP A;  1BN5 A;  5E5B A;  1C27 A;  2Q92 A;  5D6E A;  2BWU A;  4IKS A;  2P99 A;  1WLR A;  1MAT A;  4RGZ 1;  2GGC A;  4U75 A;  1R58 A;  4ZWU A;  1QXY A;  2GA2 A;  4IKT A;  3CTZ A;  2NQ6 A;  1B59 A;  4U6Z A;  3PKD A;  3OVK A;  2V3Z A;  1YVM A;  2GG8 A;  3CB5 A;  1WL6 A;  5JHU A;  3IG4 A;  1C24 A;  3FMR A;  2EA2 A;  2GG5 A;  4R60 A;  1WBQ A;  4MAT A;  2B3K A;  1WKM A;  2MAT A;  4HXX A;  4U76 A;  1BOA A;  1WL9 A;  3BIT A;  4ZNG A;  3S6B A;  2GZ5 A;  4IEC A;  4U71 A;  2BN7 A;  2DFI A;  3PKC A;  5D6F A;  4QR8 A;  3PN9 A;  1C22 A;  2GU6 A;  2Q96 A;  2EA4 A;  4FO8 A;  1WY2 A;  5FCF A;  2P9A A;  3IU9 A;  2Q8K A;  1KQ0 A;  4A6W A;  4Z7M A;  4FLK A;  4ZWO A;  5CDL A;  2GU4 A;  5E2C A;  1B6A A;  1PV9 A;  3PKB A;  1XGS A;  1W7V A; 
#chains in the Genus database with same CATH homology
 4PNC A;  3D27 A;  4FKC A;  2GU5 A;  4FO7 A;  3FMQ A;  3TB5 A;  4S01 A;  2BWY A;  2BHB A;  3MAT A;  1XGM A;  4FLJ A;  2GG9 A;  4RZY A;  2BH3 A;  4IKR A;  1KQ9 A;  4U6C A;  3BIQ A;  2GG3 A;  1Y1N A;  2BWT A;  1C21 A;  5CNX A;  2GTX A;  3PKE A;  4IF7 A;  3IU8 A;  4U1B A;  2EVO A;  2GGB A;  2BHC A;  1CHM A;  2BHD A;  2NQ7 A;  2Q94 A;  4S2R P;  2ZSG A;  4U73 A;  2GG0 A;  4U70 A;  1O0X A;  2BHA A;  2BWV A;  2V3X A;  5CDV A;  3L7G A;  2BWW A;  4IPA A;  4U69 A;  5CIK A;  1YW7 A;  1M35 A;  3CB6 A;  2GG7 A;  3BIP A;  1YW8 A;  1XGN A;  2BWS A;  2V6C A;  4S00 A;  1R5H A;  1QXZ A;  3FM3 A;  3OOO A;  4FUK A;  2V3Y A;  4OOK A;  1KP0 A;  1XNZ A;  3O5V A;  4RZZ A;  4FLI A;  4U6J A;  4IU6 A;  2OAZ A;  2GU7 A;  2B3H A;  4JUQ A;  1XGO A;  2ADU A;  1C23 A;  1R5G A;  1A16 A;  2GG2 A;  2B3L A;  1JAW A;  2P98 A;  4U6W A;  2OKN A;  1WN1 A;  4A6V A;  1QXW A;  2BB7 A;  2HOW A;  4S2T P;  4KM3 A;  3PEB A;  1N51 A;  3TAV A;  3ROR A;  5JFR A;  3Q6D A;  5CE6 A;  5CLS A;  1QZY A;  2Q93 A;  2G6P A;  3MR1 A;  2EVM A;  1YJ3 A;  3QOC A;  3RVA A;  4EGE A;  3PKA A;  4IKU A;  2EVC A;  3IL0 A;  4PV4 A;  2IW2 A;  3IU7 A;  1YW9 A;  4FLL A;  3L24 A;  5FCH A;  4IDY A;  2BWX A;  4U6E A;  1W2M A;  3MX6 A;  5JI6 A;  4B28 A;  2Q95 A;  5CDE A;  3I7M A;  4ZWP A;  1BN5 A;  5E5B A;  1C27 A;  2Q92 A;  5D6E A;  2BWU A;  4IKS A;  2P99 A;  1WLR A;  1MAT A;  4RGZ 1;  2GGC A;  4U75 A;  1R58 A;  4ZWU A;  1QXY A;  2GA2 A;  4IKT A;  3CTZ A;  2NQ6 A;  1B59 A;  4U6Z A;  3PKD A;  3OVK A;  2V3Z A;  1YVM A;  2GG8 A;  3CB5 A;  1WL6 A;  5JHU A;  3IG4 A;  1C24 A;  3FMR A;  2EA2 A;  2GG5 A;  4R60 A;  1WBQ A;  4MAT A;  2B3K A;  1WKM A;  2MAT A;  4HXX A;  4U76 A;  1BOA A;  1WL9 A;  3BIT A;  4ZNG A;  3S6B A;  2GZ5 A;  4IEC A;  4U71 A;  2BN7 A;  2DFI A;  3PKC A;  5D6F A;  4QR8 A;  3PN9 A;  1C22 A;  2GU6 A;  2Q96 A;  2EA4 A;  4FO8 A;  1WY2 A;  5FCF A;  2P9A A;  3IU9 A;  2Q8K A;  1KQ0 A;  4A6W A;  4Z7M A;  4FLK A;  4ZWO A;  5CDL A;  2GU4 A;  5E2C A;  1B6A A;  1PV9 A;  3PKB A;  1XGS A;  1W7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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