5CDEA

R372a mutant of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
398
structure length
398
Chain Sequence
b'STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVALEDHFYVTDTGAQWFTPPSVAIDQPFA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
molecule tags Hydrolase
source organism Xanthomonas campestris
publication title R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
rcsb
total genus 133
structure length 398
sequence length 398
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdeA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdeA02
1BN5A 3CB5A 3MATA 1MATA 1YW8A 3RORA 4S2TP 2Q92A 4U6ZA 1C24A 2GG7A 2P98A 1W7VA 2GU7A 2B3LA 4RGZ1 2BHBA 4IF7A 4U70A 5FCHA 4RZZA 5D6FA 4U6JA 1KP0A 2V3XA 2ADUA 4FLKA 1WLRA 2GTXA 1W2MA 1YVMA 1WN1A 2B3HA 2EA4A 4U73A 4S00A 1WY2A 5JFRA 2BWXA 2GZ5A 4FKCA 4S2RP 1XNZA 2BWUA 1R5GA 2IW2A 1C23A 4U6EA 4ZWPA 2BH3A 4MATA 3TAVA 3FM3A 3BIPA 1C22A 3BIQA 5CNXA 4OOKA 4IKRA 2MATA 3Q6DA 5FCFA 2EA2A 2GU5A 4U6CA 4ZWUA 1QXZA 2V3ZA 3OOOA 2Q95A 2GG8A 4JUQA 2P9AA 4U75A 2BHDA 4S01A 1QXYA 2B3KA 2ZSGA 5CDVA 1QXWA 1QZYA 2V6CA 3PKAA 3IL0A 1BOAA 3IU8A 5E2CA 1B59A 1R5HA 2OAZA 1B6AA 2BN7A 1WL6A 2NQ6A 3D27A 3BITA 1WL9A 3S6BA 4FLLA 4B28A 3RVAA 2Q93A 1WKMA 4U76A 3I7MA 2GU4A 2GG0A 1KQ0A 4EGEA 1XGMA 4FO7A 3PN9A 4PNCA 2GU6A 3FMQA 3IU9A 2Q94A 4U69A 1YW9A 3PEBA 3CTZA 1YJ3A 1R58A 5JHUA 1PV9A 4R60A 1A16A 5D6EA 3O5VA 4ZWOA 2BHCA 2BB7A 1XGNA 3L24A 2GGCA 4U6WA 4IKUA 2BWSA 4IKSA 1C21A 1XGSA 3TB5A 1C27A 4A6VA 5CE6A 2BWTA 3PKCA 4FUKA 4KM3A 4A6WA 4Z7MA 2NQ7A 4IECA 2EVCA 3PKBA 4IPAA 2Q8KA 1JAWA 2V3YA 2Q96A 1M35A 2DFIA 4FLIA 2EVOA 5CLSA 3IU7A 5JI6A 2GG9A 3PKEA 2BWYA 2BHAA 2G6PA 2HOWA 5CIKA 1CHMA 5CDLA 3MR1A 4FLJA 3OVKA 1N51A 2GGBA 1YW7A 4HXXA 4U1BA 2BWVA 1WBQA 3PKDA 3L7GA 5CDEA 1XGOA 4ZNGA 4U71A 2GG3A 3CB6A 3FMRA 2GG2A 4PV4A 2P99A 3IG4A 3QOCA 5E5BA 1Y1NA 2EVMA 2GA2A 2BWWA 4FO8A 4IDYA 4RZYA 4IU6A 1O0XA 4IKTA 4QR8A 2OKNA 3MX6A 1KQ9A 2GG5A
chains in the Genus database with same CATH superfamily
1BN5A 3CB5A 3MATA 1MATA 1YW8A 3RORA 4S2TP 2Q92A 4U6ZA 1C24A 2GG7A 2P98A 1W7VA 2GU7A 2B3LA 4RGZ1 2BHBA 4IF7A 4U70A 5FCHA 4RZZA 5D6FA 4U6JA 1KP0A 2V3XA 2ADUA 4FLKA 1WLRA 2GTXA 1W2MA 1YVMA 1WN1A 2B3HA 2EA4A 4U73A 4S00A 1WY2A 5JFRA 2BWXA 2GZ5A 4FKCA 4S2RP 1XNZA 2BWUA 1R5GA 2IW2A 1C23A 4U6EA 4ZWPA 2BH3A 4MATA 3TAVA 3FM3A 3BIPA 1C22A 3BIQA 5CNXA 4OOKA 4IKRA 2MATA 3Q6DA 5FCFA 2EA2A 2GU5A 4U6CA 4ZWUA 1QXZA 2V3ZA 3OOOA 2Q95A 2GG8A 4JUQA 2P9AA 4U75A 2BHDA 4S01A 1QXYA 2B3KA 2ZSGA 5CDVA 1QXWA 1QZYA 2V6CA 3PKAA 3IL0A 1BOAA 3IU8A 5E2CA 1B59A 1R5HA 2OAZA 1B6AA 2BN7A 1WL6A 2NQ6A 3D27A 3BITA 1WL9A 3S6BA 4FLLA 4B28A 3RVAA 2Q93A 1WKMA 4U76A 3I7MA 2GU4A 2GG0A 1KQ0A 4EGEA 1XGMA 4FO7A 3PN9A 4PNCA 2GU6A 3FMQA 3IU9A 2Q94A 4U69A 1YW9A 3PEBA 3CTZA 1YJ3A 1R58A 5JHUA 1PV9A 4R60A 1A16A 5D6EA 3O5VA 4ZWOA 2BHCA 2BB7A 1XGNA 3L24A 2GGCA 4U6WA 4IKUA 2BWSA 4IKSA 1C21A 1XGSA 3TB5A 1C27A 4A6VA 5CE6A 2BWTA 3PKCA 4FUKA 4KM3A 4A6WA 4Z7MA 2NQ7A 4IECA 2EVCA 3PKBA 4IPAA 2Q8KA 1JAWA 2V3YA 2Q96A 1M35A 2DFIA 4FLIA 2EVOA 5CLSA 3IU7A 5JI6A 2GG9A 3PKEA 2BWYA 2BHAA 2G6PA 2HOWA 5CIKA 1CHMA 5CDLA 3MR1A 4FLJA 3OVKA 1N51A 2GGBA 1YW7A 4HXXA 4U1BA 2BWVA 1WBQA 3PKDA 3L7GA 5CDEA 1XGOA 4ZNGA 4U71A 2GG3A 3CB6A 3FMRA 2GG2A 4PV4A 2P99A 3IG4A 3QOCA 5E5BA 1Y1NA 2EVMA 2GA2A 2BWWA 4FO8A 4IDYA 4RZYA 4IU6A 1O0XA 4IKTA 4QR8A 2OKNA 3MX6A 1KQ9A 2GG5A
chains in the Genus database with same CATH topology
1BN5A 3CB5A 3MATA 1MATA 1YW8A 3RORA 4S2TP 2Q92A 4U6ZA 1C24A 2GG7A 2P98A 1W7VA 2GU7A 2B3LA 4RGZ1 2BHBA 4IF7A 4U70A 5FCHA 4RZZA 5D6FA 4U6JA 1KP0A 2V3XA 2ADUA 4FLKA 1WLRA 2GTXA 1W2MA 1YVMA 1WN1A 2B3HA 2EA4A 4U73A 4S00A 1WY2A 5JFRA 2BWXA 2GZ5A 4FKCA 4S2RP 1XNZA 2BWUA 1R5GA 2IW2A 1C23A 4U6EA 4ZWPA 2BH3A 4MATA 3TAVA 3FM3A 3BIPA 1C22A 3BIQA 5CNXA 4OOKA 4IKRA 2MATA 3Q6DA 5FCFA 2EA2A 2GU5A 4U6CA 4ZWUA 1QXZA 2V3ZA 3OOOA 2Q95A 2GG8A 4JUQA 2P9AA 4U75A 2BHDA 4S01A 1QXYA 2B3KA 2ZSGA 5CDVA 1QXWA 1QZYA 2V6CA 3PKAA 3IL0A 1BOAA 3IU8A 5E2CA 1B59A 1R5HA 2OAZA 1B6AA 2BN7A 1WL6A 2NQ6A 3D27A 3BITA 1WL9A 3S6BA 4FLLA 4B28A 3RVAA 2Q93A 1WKMA 4U76A 3I7MA 2GU4A 2GG0A 1KQ0A 4EGEA 1XGMA 4FO7A 3PN9A 4PNCA 2GU6A 3FMQA 3IU9A 2Q94A 4U69A 1YW9A 3PEBA 3CTZA 1YJ3A 1R58A 5JHUA 1PV9A 4R60A 1A16A 5D6EA 3O5VA 4ZWOA 2BHCA 2BB7A 1XGNA 3L24A 2GGCA 4U6WA 4IKUA 2BWSA 4IKSA 1C21A 1XGSA 3TB5A 1C27A 4A6VA 5CE6A 2BWTA 3PKCA 4FUKA 4KM3A 4A6WA 4Z7MA 2NQ7A 4IECA 2EVCA 3PKBA 4IPAA 2Q8KA 1JAWA 2V3YA 2Q96A 1M35A 2DFIA 4FLIA 2EVOA 5CLSA 3IU7A 5JI6A 2GG9A 3PKEA 2BWYA 2BHAA 2G6PA 2HOWA 5CIKA 1CHMA 5CDLA 3MR1A 4FLJA 3OVKA 1N51A 2GGBA 1YW7A 4HXXA 4U1BA 2BWVA 1WBQA 3PKDA 3L7GA 5CDEA 1XGOA 4ZNGA 4U71A 2GG3A 3CB6A 3FMRA 2GG2A 4PV4A 2P99A 3IG4A 3QOCA 5E5BA 1Y1NA 2EVMA 2GA2A 2BWWA 4FO8A 4IDYA 4RZYA 4IU6A 1O0XA 4IKTA 4QR8A 2OKNA 3MX6A 1KQ9A 2GG5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BN5 A;  3CB5 A;  3MAT A;  1MAT A;  1YW8 A;  3ROR A;  4S2T P;  2Q92 A;  4U6Z A;  1C24 A;  2GG7 A;  2P98 A;  1W7V A;  2GU7 A;  2B3L A;  4RGZ 1;  2BHB A;  4IF7 A;  4U70 A;  5FCH A;  4RZZ A;  5D6F A;  4U6J A;  1KP0 A;  2V3X A;  2ADU A;  4FLK A;  1WLR A;  2GTX A;  1W2M A;  1YVM A;  1WN1 A;  2B3H A;  2EA4 A;  4U73 A;  4S00 A;  1WY2 A;  5JFR A;  2BWX A;  2GZ5 A;  4FKC A;  4S2R P;  1XNZ A;  2BWU A;  1R5G A;  2IW2 A;  1C23 A;  4U6E A;  4ZWP A;  2BH3 A;  4MAT A;  3TAV A;  3FM3 A;  3BIP A;  1C22 A;  3BIQ A;  5CNX A;  4OOK A;  4IKR A;  2MAT A;  3Q6D A;  5FCF A;  2EA2 A;  2GU5 A;  4U6C A;  4ZWU A;  1QXZ A;  2V3Z A;  3OOO A;  2Q95 A;  2GG8 A;  4JUQ A;  2P9A A;  4U75 A;  2BHD A;  4S01 A;  1QXY A;  2B3K A;  2ZSG A;  5CDV A;  1QXW A;  1QZY A;  2V6C A;  3PKA A;  3IL0 A;  1BOA A;  3IU8 A;  5E2C A;  1B59 A;  1R5H A;  2OAZ A;  1B6A A;  2BN7 A;  1WL6 A;  2NQ6 A;  3D27 A;  3BIT A;  1WL9 A;  3S6B A;  4FLL A;  4B28 A;  3RVA A;  2Q93 A;  1WKM A;  4U76 A;  3I7M A;  2GU4 A;  2GG0 A;  1KQ0 A;  4EGE A;  1XGM A;  4FO7 A;  3PN9 A;  4PNC A;  2GU6 A;  3FMQ A;  3IU9 A;  2Q94 A;  4U69 A;  1YW9 A;  3PEB A;  3CTZ A;  1YJ3 A;  1R58 A;  5JHU A;  1PV9 A;  4R60 A;  1A16 A;  5D6E A;  3O5V A;  4ZWO A;  2BHC A;  2BB7 A;  1XGN A;  3L24 A;  2GGC A;  4U6W A;  4IKU A;  2BWS A;  4IKS A;  1C21 A;  1XGS A;  3TB5 A;  1C27 A;  4A6V A;  5CE6 A;  2BWT A;  3PKC A;  4FUK A;  4KM3 A;  4A6W A;  4Z7M A;  2NQ7 A;  4IEC A;  2EVC A;  3PKB A;  4IPA A;  2Q8K A;  1JAW A;  2V3Y A;  2Q96 A;  1M35 A;  2DFI A;  4FLI A;  2EVO A;  5CLS A;  3IU7 A;  5JI6 A;  2GG9 A;  3PKE A;  2BWY A;  2BHA A;  2G6P A;  2HOW A;  5CIK A;  1CHM A;  5CDL A;  3MR1 A;  4FLJ A;  3OVK A;  1N51 A;  2GGB A;  1YW7 A;  4HXX A;  4U1B A;  2BWV A;  1WBQ A;  3PKD A;  3L7G A;  5CDE A;  1XGO A;  4ZNG A;  4U71 A;  2GG3 A;  3CB6 A;  3FMR A;  2GG2 A;  4PV4 A;  2P99 A;  3IG4 A;  3QOC A;  5E5B A;  1Y1N A;  2EVM A;  2GA2 A;  2BWW A;  4FO8 A;  4IDY A;  4RZY A;  4IU6 A;  1O0X A;  4IKT A;  4QR8 A;  2OKN A;  3MX6 A;  1KQ9 A;  2GG5 A; 
#chains in the Genus database with same CATH topology
 1BN5 A;  3CB5 A;  3MAT A;  1MAT A;  1YW8 A;  3ROR A;  4S2T P;  2Q92 A;  4U6Z A;  1C24 A;  2GG7 A;  2P98 A;  1W7V A;  2GU7 A;  2B3L A;  4RGZ 1;  2BHB A;  4IF7 A;  4U70 A;  5FCH A;  4RZZ A;  5D6F A;  4U6J A;  1KP0 A;  2V3X A;  2ADU A;  4FLK A;  1WLR A;  2GTX A;  1W2M A;  1YVM A;  1WN1 A;  2B3H A;  2EA4 A;  4U73 A;  4S00 A;  1WY2 A;  5JFR A;  2BWX A;  2GZ5 A;  4FKC A;  4S2R P;  1XNZ A;  2BWU A;  1R5G A;  2IW2 A;  1C23 A;  4U6E A;  4ZWP A;  2BH3 A;  4MAT A;  3TAV A;  3FM3 A;  3BIP A;  1C22 A;  3BIQ A;  5CNX A;  4OOK A;  4IKR A;  2MAT A;  3Q6D A;  5FCF A;  2EA2 A;  2GU5 A;  4U6C A;  4ZWU A;  1QXZ A;  2V3Z A;  3OOO A;  2Q95 A;  2GG8 A;  4JUQ A;  2P9A A;  4U75 A;  2BHD A;  4S01 A;  1QXY A;  2B3K A;  2ZSG A;  5CDV A;  1QXW A;  1QZY A;  2V6C A;  3PKA A;  3IL0 A;  1BOA A;  3IU8 A;  5E2C A;  1B59 A;  1R5H A;  2OAZ A;  1B6A A;  2BN7 A;  1WL6 A;  2NQ6 A;  3D27 A;  3BIT A;  1WL9 A;  3S6B A;  4FLL A;  4B28 A;  3RVA A;  2Q93 A;  1WKM A;  4U76 A;  3I7M A;  2GU4 A;  2GG0 A;  1KQ0 A;  4EGE A;  1XGM A;  4FO7 A;  3PN9 A;  4PNC A;  2GU6 A;  3FMQ A;  3IU9 A;  2Q94 A;  4U69 A;  1YW9 A;  3PEB A;  3CTZ A;  1YJ3 A;  1R58 A;  5JHU A;  1PV9 A;  4R60 A;  1A16 A;  5D6E A;  3O5V A;  4ZWO A;  2BHC A;  2BB7 A;  1XGN A;  3L24 A;  2GGC A;  4U6W A;  4IKU A;  2BWS A;  4IKS A;  1C21 A;  1XGS A;  3TB5 A;  1C27 A;  4A6V A;  5CE6 A;  2BWT A;  3PKC A;  4FUK A;  4KM3 A;  4A6W A;  4Z7M A;  2NQ7 A;  4IEC A;  2EVC A;  3PKB A;  4IPA A;  2Q8K A;  1JAW A;  2V3Y A;  2Q96 A;  1M35 A;  2DFI A;  4FLI A;  2EVO A;  5CLS A;  3IU7 A;  5JI6 A;  2GG9 A;  3PKE A;  2BWY A;  2BHA A;  2G6P A;  2HOW A;  5CIK A;  1CHM A;  5CDL A;  3MR1 A;  4FLJ A;  3OVK A;  1N51 A;  2GGB A;  1YW7 A;  4HXX A;  4U1B A;  2BWV A;  1WBQ A;  3PKD A;  3L7G A;  5CDE A;  1XGO A;  4ZNG A;  4U71 A;  2GG3 A;  3CB6 A;  3FMR A;  2GG2 A;  4PV4 A;  2P99 A;  3IG4 A;  3QOC A;  5E5B A;  1Y1N A;  2EVM A;  2GA2 A;  2BWW A;  4FO8 A;  4IDY A;  4RZY A;  4IU6 A;  1O0X A;  4IKT A;  4QR8 A;  2OKN A;  3MX6 A;  1KQ9 A;  2GG5 A; 
#chains in the Genus database with same CATH homology
 1BN5 A;  3CB5 A;  3MAT A;  1MAT A;  1YW8 A;  3ROR A;  4S2T P;  2Q92 A;  4U6Z A;  1C24 A;  2GG7 A;  2P98 A;  1W7V A;  2GU7 A;  2B3L A;  4RGZ 1;  2BHB A;  4IF7 A;  4U70 A;  5FCH A;  4RZZ A;  5D6F A;  4U6J A;  1KP0 A;  2V3X A;  2ADU A;  4FLK A;  1WLR A;  2GTX A;  1W2M A;  1YVM A;  1WN1 A;  2B3H A;  2EA4 A;  4U73 A;  4S00 A;  1WY2 A;  5JFR A;  2BWX A;  2GZ5 A;  4FKC A;  4S2R P;  1XNZ A;  2BWU A;  1R5G A;  2IW2 A;  1C23 A;  4U6E A;  4ZWP A;  2BH3 A;  4MAT A;  3TAV A;  3FM3 A;  3BIP A;  1C22 A;  3BIQ A;  5CNX A;  4OOK A;  4IKR A;  2MAT A;  3Q6D A;  5FCF A;  2EA2 A;  2GU5 A;  4U6C A;  4ZWU A;  1QXZ A;  2V3Z A;  3OOO A;  2Q95 A;  2GG8 A;  4JUQ A;  2P9A A;  4U75 A;  2BHD A;  4S01 A;  1QXY A;  2B3K A;  2ZSG A;  5CDV A;  1QXW A;  1QZY A;  2V6C A;  3PKA A;  3IL0 A;  1BOA A;  3IU8 A;  5E2C A;  1B59 A;  1R5H A;  2OAZ A;  1B6A A;  2BN7 A;  1WL6 A;  2NQ6 A;  3D27 A;  3BIT A;  1WL9 A;  3S6B A;  4FLL A;  4B28 A;  3RVA A;  2Q93 A;  1WKM A;  4U76 A;  3I7M A;  2GU4 A;  2GG0 A;  1KQ0 A;  4EGE A;  1XGM A;  4FO7 A;  3PN9 A;  4PNC A;  2GU6 A;  3FMQ A;  3IU9 A;  2Q94 A;  4U69 A;  1YW9 A;  3PEB A;  3CTZ A;  1YJ3 A;  1R58 A;  5JHU A;  1PV9 A;  4R60 A;  1A16 A;  5D6E A;  3O5V A;  4ZWO A;  2BHC A;  2BB7 A;  1XGN A;  3L24 A;  2GGC A;  4U6W A;  4IKU A;  2BWS A;  4IKS A;  1C21 A;  1XGS A;  3TB5 A;  1C27 A;  4A6V A;  5CE6 A;  2BWT A;  3PKC A;  4FUK A;  4KM3 A;  4A6W A;  4Z7M A;  2NQ7 A;  4IEC A;  2EVC A;  3PKB A;  4IPA A;  2Q8K A;  1JAW A;  2V3Y A;  2Q96 A;  1M35 A;  2DFI A;  4FLI A;  2EVO A;  5CLS A;  3IU7 A;  5JI6 A;  2GG9 A;  3PKE A;  2BWY A;  2BHA A;  2G6P A;  2HOW A;  5CIK A;  1CHM A;  5CDL A;  3MR1 A;  4FLJ A;  3OVK A;  1N51 A;  2GGB A;  1YW7 A;  4HXX A;  4U1B A;  2BWV A;  1WBQ A;  3PKD A;  3L7G A;  5CDE A;  1XGO A;  4ZNG A;  4U71 A;  2GG3 A;  3CB6 A;  3FMR A;  2GG2 A;  4PV4 A;  2P99 A;  3IG4 A;  3QOC A;  5E5B A;  1Y1N A;  2EVM A;  2GA2 A;  2BWW A;  4FO8 A;  4IDY A;  4RZY A;  4IU6 A;  1O0X A;  4IKT A;  4QR8 A;  2OKN A;  3MX6 A;  1KQ9 A;  2GG5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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