3BITA

Crystal structure of yeast spt16 n-terminal domain
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
447
structure length
447
Chain Sequence
MEELNIDFDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDSQSANNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits.
pubmed doi rcsb
molecule keywords FACT complex subunit SPT16
total genus 158
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3bitA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3bitA02
2GU5A 2BHDA 5FCHA 1BN5A 1KP0A 5E5BA 4U6WA 2EA4A 2G6PA 3IG4A 2GZ5A 4MATA 2BHBA 3OOOA 1N51A 4A6WA 1PV9A 2EVCA 4U69A 4U71A 2BWTA 5D6FA 1C23A 2BHCA 3OVKA 5CDLA 1C27A 2BWSA 2BWVA 1R5GA 4ZWOA 1QXWA 3BIQA 1XGOA 1R5HA 4S2TP 4FLLA 2GU7A 2BWXA 3MATA 1WL9A 2V6CA 3PKDA 1O0XA 4FO7A 4RZYA 2BB7A 4IDYA 3IU8A 2Q93A 4IU6A 5JI6A 4ZWUA 3I7MA 3CB5A 1M35A 4U1BA 5E2CA 1JAWA 1Y1NA 2P9AA 5CDEA 4IPAA 2P98A 2BN7A 1XNZA 2Q96A 2BHAA 3IL0A 4PNCA 4FUKA 2HOWA 1KQ0A 3BIPA 1YW7A 3CB6A 5D6EA 3L24A 1YW8A 2B3KA 3MX6A 1WBQA 1CHMA 2MATA 4EGEA 1YW9A 3CTZA 4IKTA 3FMQA 5CIKA 3BITA 2EA2A 2ZSGA 2ADUA 4ZNGA 3IU9A 5FCFA 2V3XA 4U73A 3S6BA 4RGZ1 2V3YA 4A6VA 5CNXA 4KM3A 4IF7A 2P99A 2BH3A 2IW2A 4JUQA 1B6AA 1QXYA 3MR1A 2GG3A 2Q92A 2BWUA 2Q8KA 4IKUA 1XGMA 2NQ6A 3PKBA 2V3ZA 2NQ7A 4RZZA 1A16A 3D27A 2GG5A 3FM3A 4IKSA 3PKAA 2BWYA 2GGCA 1WLRA 2EVMA 2BWWA 3L7GA 3QOCA 1W2MA 1QZYA 2B3HA 1WN1A 3PKEA 4S00A 4FO8A 5CLSA 2Q95A 2GG2A 2B3LA 2GG0A 4U76A 5JFRA 1QXZA 1YJ3A 4FLKA 4Z7MA 2GGBA 2GG8A 3Q6DA 1XGNA 2GU4A 4FLIA 5CE6A 1BOAA 4U6JA 3RORA 4U75A 2GG9A 4IECA 1KQ9A 4U6ZA 1R58A 2DFIA 3TB5A 1WY2A 1WL6A 2GTXA 2EVOA 2Q94A 4OOKA 3PEBA 1XGSA 3IU7A 4HXXA 2GG7A 4S01A 2OKNA 3PN9A 4QR8A 4U6EA 5JHUA 4IKRA 1W7VA 4S2RP 4FLJA 1C22A 3FMRA 3RVAA 4ZWPA 3PKCA 4B28A 4U70A 1B59A 4R60A 1C21A 1C24A 3O5VA 1YVMA 2GU6A 3TAVA 1MATA 2OAZA 4U6CA 1WKMA 2GA2A 4PV4A 4FKCA 5CDVA
chains in the Genus database with same CATH superfamily
2GU5A 2BHDA 5FCHA 1BN5A 1KP0A 5E5BA 4U6WA 2EA4A 2G6PA 3IG4A 2GZ5A 4MATA 2BHBA 3OOOA 1N51A 4A6WA 1PV9A 2EVCA 4U69A 4U71A 2BWTA 5D6FA 1C23A 2BHCA 3OVKA 5CDLA 1C27A 2BWSA 2BWVA 1R5GA 4ZWOA 1QXWA 3BIQA 1XGOA 1R5HA 4S2TP 4FLLA 2GU7A 2BWXA 3MATA 1WL9A 2V6CA 3PKDA 1O0XA 4FO7A 4RZYA 2BB7A 4IDYA 3IU8A 2Q93A 4IU6A 5JI6A 4ZWUA 3I7MA 3CB5A 1M35A 4U1BA 5E2CA 1JAWA 1Y1NA 2P9AA 5CDEA 4IPAA 2P98A 2BN7A 1XNZA 2Q96A 2BHAA 3IL0A 4PNCA 4FUKA 2HOWA 1KQ0A 3BIPA 1YW7A 3CB6A 5D6EA 3L24A 1YW8A 2B3KA 3MX6A 1WBQA 1CHMA 2MATA 4EGEA 1YW9A 3CTZA 4IKTA 3FMQA 5CIKA 3BITA 2EA2A 2ZSGA 2ADUA 4ZNGA 3IU9A 5FCFA 2V3XA 4U73A 3S6BA 4RGZ1 2V3YA 4A6VA 5CNXA 4KM3A 4IF7A 2P99A 2BH3A 2IW2A 4JUQA 1B6AA 1QXYA 3MR1A 2GG3A 2Q92A 2BWUA 2Q8KA 4IKUA 1XGMA 2NQ6A 3PKBA 2V3ZA 2NQ7A 4RZZA 1A16A 3D27A 2GG5A 3FM3A 4IKSA 3PKAA 2BWYA 2GGCA 1WLRA 2EVMA 2BWWA 3L7GA 3QOCA 1W2MA 1QZYA 2B3HA 1WN1A 3PKEA 4S00A 4FO8A 5CLSA 2Q95A 2GG2A 2B3LA 2GG0A 4U76A 5JFRA 1QXZA 1YJ3A 4FLKA 4Z7MA 2GGBA 2GG8A 3Q6DA 1XGNA 2GU4A 4FLIA 5CE6A 1BOAA 4U6JA 3RORA 4U75A 2GG9A 4IECA 1KQ9A 4U6ZA 1R58A 2DFIA 3TB5A 1WY2A 1WL6A 2GTXA 2EVOA 2Q94A 4OOKA 3PEBA 1XGSA 3IU7A 4HXXA 2GG7A 4S01A 2OKNA 3PN9A 4QR8A 4U6EA 5JHUA 4IKRA 1W7VA 4S2RP 4FLJA 1C22A 3FMRA 3RVAA 4ZWPA 3PKCA 4B28A 4U70A 1B59A 4R60A 1C21A 1C24A 3O5VA 1YVMA 2GU6A 3TAVA 1MATA 2OAZA 4U6CA 1WKMA 2GA2A 4PV4A 4FKCA 5CDVA
chains in the Genus database with same CATH topology
2GU5A 2BHDA 5FCHA 1BN5A 1KP0A 5E5BA 4U6WA 2EA4A 2G6PA 3IG4A 2GZ5A 4MATA 2BHBA 3OOOA 1N51A 4A6WA 1PV9A 2EVCA 4U69A 4U71A 2BWTA 5D6FA 1C23A 2BHCA 3OVKA 5CDLA 1C27A 2BWSA 2BWVA 1R5GA 4ZWOA 1QXWA 3BIQA 1XGOA 1R5HA 4S2TP 4FLLA 2GU7A 2BWXA 3MATA 1WL9A 2V6CA 3PKDA 1O0XA 4FO7A 4RZYA 2BB7A 4IDYA 3IU8A 2Q93A 4IU6A 5JI6A 4ZWUA 3I7MA 3CB5A 1M35A 4U1BA 5E2CA 1JAWA 1Y1NA 2P9AA 5CDEA 4IPAA 2P98A 2BN7A 1XNZA 2Q96A 2BHAA 3IL0A 4PNCA 4FUKA 2HOWA 1KQ0A 3BIPA 1YW7A 3CB6A 5D6EA 3L24A 1YW8A 2B3KA 3MX6A 1WBQA 1CHMA 2MATA 4EGEA 1YW9A 3CTZA 4IKTA 3FMQA 5CIKA 3BITA 2EA2A 2ZSGA 2ADUA 4ZNGA 3IU9A 5FCFA 2V3XA 4U73A 3S6BA 4RGZ1 2V3YA 4A6VA 5CNXA 4KM3A 4IF7A 2P99A 2BH3A 2IW2A 4JUQA 1B6AA 1QXYA 3MR1A 2GG3A 2Q92A 2BWUA 2Q8KA 4IKUA 1XGMA 2NQ6A 3PKBA 2V3ZA 2NQ7A 4RZZA 1A16A 3D27A 2GG5A 3FM3A 4IKSA 3PKAA 2BWYA 2GGCA 1WLRA 2EVMA 2BWWA 3L7GA 3QOCA 1W2MA 1QZYA 2B3HA 1WN1A 3PKEA 4S00A 4FO8A 5CLSA 2Q95A 2GG2A 2B3LA 2GG0A 4U76A 5JFRA 1QXZA 1YJ3A 4FLKA 4Z7MA 2GGBA 2GG8A 3Q6DA 1XGNA 2GU4A 4FLIA 5CE6A 1BOAA 4U6JA 3RORA 4U75A 2GG9A 4IECA 1KQ9A 4U6ZA 1R58A 2DFIA 3TB5A 1WY2A 1WL6A 2GTXA 2EVOA 2Q94A 4OOKA 3PEBA 1XGSA 3IU7A 4HXXA 2GG7A 4S01A 2OKNA 3PN9A 4QR8A 4U6EA 5JHUA 4IKRA 1W7VA 4S2RP 4FLJA 1C22A 3FMRA 3RVAA 4ZWPA 3PKCA 4B28A 4U70A 1B59A 4R60A 1C21A 1C24A 3O5VA 1YVMA 2GU6A 3TAVA 1MATA 2OAZA 4U6CA 1WKMA 2GA2A 4PV4A 4FKCA 5CDVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GU5 A;  2BHD A;  5FCH A;  1BN5 A;  1KP0 A;  5E5B A;  4U6W A;  2EA4 A;  2G6P A;  3IG4 A;  2GZ5 A;  4MAT A;  2BHB A;  3OOO A;  1N51 A;  4A6W A;  1PV9 A;  2EVC A;  4U69 A;  4U71 A;  2BWT A;  5D6F A;  1C23 A;  2BHC A;  3OVK A;  5CDL A;  1C27 A;  2BWS A;  2BWV A;  1R5G A;  4ZWO A;  1QXW A;  3BIQ A;  1XGO A;  1R5H A;  4S2T P;  4FLL A;  2GU7 A;  2BWX A;  3MAT A;  1WL9 A;  2V6C A;  3PKD A;  1O0X A;  4FO7 A;  4RZY A;  2BB7 A;  4IDY A;  3IU8 A;  2Q93 A;  4IU6 A;  5JI6 A;  4ZWU A;  3I7M A;  3CB5 A;  1M35 A;  4U1B A;  5E2C A;  1JAW A;  1Y1N A;  2P9A A;  5CDE A;  4IPA A;  2P98 A;  2BN7 A;  1XNZ A;  2Q96 A;  2BHA A;  3IL0 A;  4PNC A;  4FUK A;  2HOW A;  1KQ0 A;  3BIP A;  1YW7 A;  3CB6 A;  5D6E A;  3L24 A;  1YW8 A;  2B3K A;  3MX6 A;  1WBQ A;  1CHM A;  2MAT A;  4EGE A;  1YW9 A;  3CTZ A;  4IKT A;  3FMQ A;  5CIK A;  3BIT A;  2EA2 A;  2ZSG A;  2ADU A;  4ZNG A;  3IU9 A;  5FCF A;  2V3X A;  4U73 A;  3S6B A;  4RGZ 1;  2V3Y A;  4A6V A;  5CNX A;  4KM3 A;  4IF7 A;  2P99 A;  2BH3 A;  2IW2 A;  4JUQ A;  1B6A A;  1QXY A;  3MR1 A;  2GG3 A;  2Q92 A;  2BWU A;  2Q8K A;  4IKU A;  1XGM A;  2NQ6 A;  3PKB A;  2V3Z A;  2NQ7 A;  4RZZ A;  1A16 A;  3D27 A;  2GG5 A;  3FM3 A;  4IKS A;  3PKA A;  2BWY A;  2GGC A;  1WLR A;  2EVM A;  2BWW A;  3L7G A;  3QOC A;  1W2M A;  1QZY A;  2B3H A;  1WN1 A;  3PKE A;  4S00 A;  4FO8 A;  5CLS A;  2Q95 A;  2GG2 A;  2B3L A;  2GG0 A;  4U76 A;  5JFR A;  1QXZ A;  1YJ3 A;  4FLK A;  4Z7M A;  2GGB A;  2GG8 A;  3Q6D A;  1XGN A;  2GU4 A;  4FLI A;  5CE6 A;  1BOA A;  4U6J A;  3ROR A;  4U75 A;  2GG9 A;  4IEC A;  1KQ9 A;  4U6Z A;  1R58 A;  2DFI A;  3TB5 A;  1WY2 A;  1WL6 A;  2GTX A;  2EVO A;  2Q94 A;  4OOK A;  3PEB A;  1XGS A;  3IU7 A;  4HXX A;  2GG7 A;  4S01 A;  2OKN A;  3PN9 A;  4QR8 A;  4U6E A;  5JHU A;  4IKR A;  1W7V A;  4S2R P;  4FLJ A;  1C22 A;  3FMR A;  3RVA A;  4ZWP A;  3PKC A;  4B28 A;  4U70 A;  1B59 A;  4R60 A;  1C21 A;  1C24 A;  3O5V A;  1YVM A;  2GU6 A;  3TAV A;  1MAT A;  2OAZ A;  4U6C A;  1WKM A;  2GA2 A;  4PV4 A;  4FKC A;  5CDV A; 
#chains in the Genus database with same CATH topology
 2GU5 A;  2BHD A;  5FCH A;  1BN5 A;  1KP0 A;  5E5B A;  4U6W A;  2EA4 A;  2G6P A;  3IG4 A;  2GZ5 A;  4MAT A;  2BHB A;  3OOO A;  1N51 A;  4A6W A;  1PV9 A;  2EVC A;  4U69 A;  4U71 A;  2BWT A;  5D6F A;  1C23 A;  2BHC A;  3OVK A;  5CDL A;  1C27 A;  2BWS A;  2BWV A;  1R5G A;  4ZWO A;  1QXW A;  3BIQ A;  1XGO A;  1R5H A;  4S2T P;  4FLL A;  2GU7 A;  2BWX A;  3MAT A;  1WL9 A;  2V6C A;  3PKD A;  1O0X A;  4FO7 A;  4RZY A;  2BB7 A;  4IDY A;  3IU8 A;  2Q93 A;  4IU6 A;  5JI6 A;  4ZWU A;  3I7M A;  3CB5 A;  1M35 A;  4U1B A;  5E2C A;  1JAW A;  1Y1N A;  2P9A A;  5CDE A;  4IPA A;  2P98 A;  2BN7 A;  1XNZ A;  2Q96 A;  2BHA A;  3IL0 A;  4PNC A;  4FUK A;  2HOW A;  1KQ0 A;  3BIP A;  1YW7 A;  3CB6 A;  5D6E A;  3L24 A;  1YW8 A;  2B3K A;  3MX6 A;  1WBQ A;  1CHM A;  2MAT A;  4EGE A;  1YW9 A;  3CTZ A;  4IKT A;  3FMQ A;  5CIK A;  3BIT A;  2EA2 A;  2ZSG A;  2ADU A;  4ZNG A;  3IU9 A;  5FCF A;  2V3X A;  4U73 A;  3S6B A;  4RGZ 1;  2V3Y A;  4A6V A;  5CNX A;  4KM3 A;  4IF7 A;  2P99 A;  2BH3 A;  2IW2 A;  4JUQ A;  1B6A A;  1QXY A;  3MR1 A;  2GG3 A;  2Q92 A;  2BWU A;  2Q8K A;  4IKU A;  1XGM A;  2NQ6 A;  3PKB A;  2V3Z A;  2NQ7 A;  4RZZ A;  1A16 A;  3D27 A;  2GG5 A;  3FM3 A;  4IKS A;  3PKA A;  2BWY A;  2GGC A;  1WLR A;  2EVM A;  2BWW A;  3L7G A;  3QOC A;  1W2M A;  1QZY A;  2B3H A;  1WN1 A;  3PKE A;  4S00 A;  4FO8 A;  5CLS A;  2Q95 A;  2GG2 A;  2B3L A;  2GG0 A;  4U76 A;  5JFR A;  1QXZ A;  1YJ3 A;  4FLK A;  4Z7M A;  2GGB A;  2GG8 A;  3Q6D A;  1XGN A;  2GU4 A;  4FLI A;  5CE6 A;  1BOA A;  4U6J A;  3ROR A;  4U75 A;  2GG9 A;  4IEC A;  1KQ9 A;  4U6Z A;  1R58 A;  2DFI A;  3TB5 A;  1WY2 A;  1WL6 A;  2GTX A;  2EVO A;  2Q94 A;  4OOK A;  3PEB A;  1XGS A;  3IU7 A;  4HXX A;  2GG7 A;  4S01 A;  2OKN A;  3PN9 A;  4QR8 A;  4U6E A;  5JHU A;  4IKR A;  1W7V A;  4S2R P;  4FLJ A;  1C22 A;  3FMR A;  3RVA A;  4ZWP A;  3PKC A;  4B28 A;  4U70 A;  1B59 A;  4R60 A;  1C21 A;  1C24 A;  3O5V A;  1YVM A;  2GU6 A;  3TAV A;  1MAT A;  2OAZ A;  4U6C A;  1WKM A;  2GA2 A;  4PV4 A;  4FKC A;  5CDV A; 
#chains in the Genus database with same CATH homology
 2GU5 A;  2BHD A;  5FCH A;  1BN5 A;  1KP0 A;  5E5B A;  4U6W A;  2EA4 A;  2G6P A;  3IG4 A;  2GZ5 A;  4MAT A;  2BHB A;  3OOO A;  1N51 A;  4A6W A;  1PV9 A;  2EVC A;  4U69 A;  4U71 A;  2BWT A;  5D6F A;  1C23 A;  2BHC A;  3OVK A;  5CDL A;  1C27 A;  2BWS A;  2BWV A;  1R5G A;  4ZWO A;  1QXW A;  3BIQ A;  1XGO A;  1R5H A;  4S2T P;  4FLL A;  2GU7 A;  2BWX A;  3MAT A;  1WL9 A;  2V6C A;  3PKD A;  1O0X A;  4FO7 A;  4RZY A;  2BB7 A;  4IDY A;  3IU8 A;  2Q93 A;  4IU6 A;  5JI6 A;  4ZWU A;  3I7M A;  3CB5 A;  1M35 A;  4U1B A;  5E2C A;  1JAW A;  1Y1N A;  2P9A A;  5CDE A;  4IPA A;  2P98 A;  2BN7 A;  1XNZ A;  2Q96 A;  2BHA A;  3IL0 A;  4PNC A;  4FUK A;  2HOW A;  1KQ0 A;  3BIP A;  1YW7 A;  3CB6 A;  5D6E A;  3L24 A;  1YW8 A;  2B3K A;  3MX6 A;  1WBQ A;  1CHM A;  2MAT A;  4EGE A;  1YW9 A;  3CTZ A;  4IKT A;  3FMQ A;  5CIK A;  3BIT A;  2EA2 A;  2ZSG A;  2ADU A;  4ZNG A;  3IU9 A;  5FCF A;  2V3X A;  4U73 A;  3S6B A;  4RGZ 1;  2V3Y A;  4A6V A;  5CNX A;  4KM3 A;  4IF7 A;  2P99 A;  2BH3 A;  2IW2 A;  4JUQ A;  1B6A A;  1QXY A;  3MR1 A;  2GG3 A;  2Q92 A;  2BWU A;  2Q8K A;  4IKU A;  1XGM A;  2NQ6 A;  3PKB A;  2V3Z A;  2NQ7 A;  4RZZ A;  1A16 A;  3D27 A;  2GG5 A;  3FM3 A;  4IKS A;  3PKA A;  2BWY A;  2GGC A;  1WLR A;  2EVM A;  2BWW A;  3L7G A;  3QOC A;  1W2M A;  1QZY A;  2B3H A;  1WN1 A;  3PKE A;  4S00 A;  4FO8 A;  5CLS A;  2Q95 A;  2GG2 A;  2B3L A;  2GG0 A;  4U76 A;  5JFR A;  1QXZ A;  1YJ3 A;  4FLK A;  4Z7M A;  2GGB A;  2GG8 A;  3Q6D A;  1XGN A;  2GU4 A;  4FLI A;  5CE6 A;  1BOA A;  4U6J A;  3ROR A;  4U75 A;  2GG9 A;  4IEC A;  1KQ9 A;  4U6Z A;  1R58 A;  2DFI A;  3TB5 A;  1WY2 A;  1WL6 A;  2GTX A;  2EVO A;  2Q94 A;  4OOK A;  3PEB A;  1XGS A;  3IU7 A;  4HXX A;  2GG7 A;  4S01 A;  2OKN A;  3PN9 A;  4QR8 A;  4U6E A;  5JHU A;  4IKR A;  1W7V A;  4S2R P;  4FLJ A;  1C22 A;  3FMR A;  3RVA A;  4ZWP A;  3PKC A;  4B28 A;  4U70 A;  1B59 A;  4R60 A;  1C21 A;  1C24 A;  3O5V A;  1YVM A;  2GU6 A;  3TAV A;  1MAT A;  2OAZ A;  4U6C A;  1WKM A;  2GA2 A;  4PV4 A;  4FKC A;  5CDV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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