5FCHA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris, phosphate and zn bound
Total Genus 133
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
398
structure length
398
Chain Sequence
STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Xanthomonas campestris pv. campestris str. atcc 33913
publication title Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases
pubmed doi rcsb
molecule keywords Proline dipeptidase
total genus 133
structure length 398
sequence length 398
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5fchA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5fchA02
5D6FA 2NQ6A 4ZWPA 3PKEA 3BIPA 2GG7A 4U71A 4Z7MA 5JFRA 1XNZA 3IU9A 2BWXA 1WLRA 2GA2A 1R58A 2B3LA 1BOAA 2EVOA 4R60A 3BIQA 3PKCA 1Y1NA 4U6JA 4U6CA 2GG0A 1C27A 2Q94A 4FLLA 1CHMA 2P99A 2BB7A 2GU7A 2BHDA 1O0XA 4S2TP 1B59A 3FM3A 2EA2A 5FCHA 4ZWOA 5CDLA 2ZSGA 3MATA 4U70A 1A16A 4OOKA 4FO8A 4FLIA 1WY2A 1BN5A 2Q96A 3TAVA 3MX6A 1WL6A 2GG9A 4IDYA 4U6WA 3PN9A 5CLSA 2V3XA 3OVKA 4U75A 2OAZA 2GG5A 1WL9A 1N51A 3IU7A 2MATA 4S01A 1MATA 2GU5A 4IKTA 2Q8KA 2V6CA 2BN7A 1QXYA 2BH3A 3CB5A 2BWUA 2P98A 1XGSA 4IPAA 3IU8A 4PNCA 1C21A 2GG8A 3RVAA 1YW9A 3PKDA 2BWTA 4FUKA 2BWYA 3PKAA 1XGNA 4RZZA 2BWVA 3Q6DA 1YVMA 2GU4A 2GZ5A 2P9AA 1YJ3A 3QOCA 4ZNGA 1B6AA 2BHAA 4RZYA 2GGBA 2NQ7A 4FO7A 1C23A 5CDVA 1QXWA 3L24A 2GTXA 1QXZA 2DFIA 1R5HA 1W7VA 4IKUA 1QZYA 1YW8A 1R5GA 1KQ0A 2V3YA 4S00A 1C24A 5JI6A 4FKCA 1XGMA 2IW2A 3FMQA 1W2MA 4A6WA 2OKNA 2GG2A 4U73A 2Q95A 1JAWA 4B28A 3S6BA 3BITA 1YW7A 3MR1A 2GU6A 5CDEA 5E2CA 3OOOA 4FLJA 2G6PA 4A6VA 5CE6A 3CB6A 4MATA 3FMRA 3RORA 4IF7A 4PV4A 3PKBA 2BHCA 4IECA 1KQ9A 4RGZ1 2V3ZA 2BWSA 1M35A 2BHBA 1C22A 3D27A 4IU6A 3O5VA 1XGOA 2HOWA 4QR8A 4S2RP 3IG4A 2EVCA 1PV9A 5CIKA 4U6EA 1WKMA 4IKSA 4U6ZA 5JHUA 3L7GA 3PEBA 2Q92A 1WN1A 4IKRA 2Q93A 2EVMA 5FCFA 4JUQA 2B3KA 2EA4A 4ZWUA 3IL0A 3TB5A 4FLKA 4U69A 5D6EA 5CNXA 1KP0A 1WBQA 3CTZA 4HXXA 3I7MA 4KM3A 2GG3A 5E5BA 2BWWA 2ADUA 2GGCA 4U76A 2B3HA 4EGEA 4U1BA
chains in the Genus database with same CATH superfamily
5D6FA 2NQ6A 4ZWPA 3PKEA 3BIPA 2GG7A 4U71A 4Z7MA 5JFRA 1XNZA 3IU9A 2BWXA 1WLRA 2GA2A 1R58A 2B3LA 1BOAA 2EVOA 4R60A 3BIQA 3PKCA 1Y1NA 4U6JA 4U6CA 2GG0A 1C27A 2Q94A 4FLLA 1CHMA 2P99A 2BB7A 2GU7A 2BHDA 1O0XA 4S2TP 1B59A 3FM3A 2EA2A 5FCHA 4ZWOA 5CDLA 2ZSGA 3MATA 4U70A 1A16A 4OOKA 4FO8A 4FLIA 1WY2A 1BN5A 2Q96A 3TAVA 3MX6A 1WL6A 2GG9A 4IDYA 4U6WA 3PN9A 5CLSA 2V3XA 3OVKA 4U75A 2OAZA 2GG5A 1WL9A 1N51A 3IU7A 2MATA 4S01A 1MATA 2GU5A 4IKTA 2Q8KA 2V6CA 2BN7A 1QXYA 2BH3A 3CB5A 2BWUA 2P98A 1XGSA 4IPAA 3IU8A 4PNCA 1C21A 2GG8A 3RVAA 1YW9A 3PKDA 2BWTA 4FUKA 2BWYA 3PKAA 1XGNA 4RZZA 2BWVA 3Q6DA 1YVMA 2GU4A 2GZ5A 2P9AA 1YJ3A 3QOCA 4ZNGA 1B6AA 2BHAA 4RZYA 2GGBA 2NQ7A 4FO7A 1C23A 5CDVA 1QXWA 3L24A 2GTXA 1QXZA 2DFIA 1R5HA 1W7VA 4IKUA 1QZYA 1YW8A 1R5GA 1KQ0A 2V3YA 4S00A 1C24A 5JI6A 4FKCA 1XGMA 2IW2A 3FMQA 1W2MA 4A6WA 2OKNA 2GG2A 4U73A 2Q95A 1JAWA 4B28A 3S6BA 3BITA 1YW7A 3MR1A 2GU6A 5CDEA 5E2CA 3OOOA 4FLJA 2G6PA 4A6VA 5CE6A 3CB6A 4MATA 3FMRA 3RORA 4IF7A 4PV4A 3PKBA 2BHCA 4IECA 1KQ9A 4RGZ1 2V3ZA 2BWSA 1M35A 2BHBA 1C22A 3D27A 4IU6A 3O5VA 1XGOA 2HOWA 4QR8A 4S2RP 3IG4A 2EVCA 1PV9A 5CIKA 4U6EA 1WKMA 4IKSA 4U6ZA 5JHUA 3L7GA 3PEBA 2Q92A 1WN1A 4IKRA 2Q93A 2EVMA 5FCFA 4JUQA 2B3KA 2EA4A 4ZWUA 3IL0A 3TB5A 4FLKA 4U69A 5D6EA 5CNXA 1KP0A 1WBQA 3CTZA 4HXXA 3I7MA 4KM3A 2GG3A 5E5BA 2BWWA 2ADUA 2GGCA 4U76A 2B3HA 4EGEA 4U1BA
chains in the Genus database with same CATH topology
5D6FA 2NQ6A 4ZWPA 3PKEA 3BIPA 2GG7A 4U71A 4Z7MA 5JFRA 1XNZA 3IU9A 2BWXA 1WLRA 2GA2A 1R58A 2B3LA 1BOAA 2EVOA 4R60A 3BIQA 3PKCA 1Y1NA 4U6JA 4U6CA 2GG0A 1C27A 2Q94A 4FLLA 1CHMA 2P99A 2BB7A 2GU7A 2BHDA 1O0XA 4S2TP 1B59A 3FM3A 2EA2A 5FCHA 4ZWOA 5CDLA 2ZSGA 3MATA 4U70A 1A16A 4OOKA 4FO8A 4FLIA 1WY2A 1BN5A 2Q96A 3TAVA 3MX6A 1WL6A 2GG9A 4IDYA 4U6WA 3PN9A 5CLSA 2V3XA 3OVKA 4U75A 2OAZA 2GG5A 1WL9A 1N51A 3IU7A 2MATA 4S01A 1MATA 2GU5A 4IKTA 2Q8KA 2V6CA 2BN7A 1QXYA 2BH3A 3CB5A 2BWUA 2P98A 1XGSA 4IPAA 3IU8A 4PNCA 1C21A 2GG8A 3RVAA 1YW9A 3PKDA 2BWTA 4FUKA 2BWYA 3PKAA 1XGNA 4RZZA 2BWVA 3Q6DA 1YVMA 2GU4A 2GZ5A 2P9AA 1YJ3A 3QOCA 4ZNGA 1B6AA 2BHAA 4RZYA 2GGBA 2NQ7A 4FO7A 1C23A 5CDVA 1QXWA 3L24A 2GTXA 1QXZA 2DFIA 1R5HA 1W7VA 4IKUA 1QZYA 1YW8A 1R5GA 1KQ0A 2V3YA 4S00A 1C24A 5JI6A 4FKCA 1XGMA 2IW2A 3FMQA 1W2MA 4A6WA 2OKNA 2GG2A 4U73A 2Q95A 1JAWA 4B28A 3S6BA 3BITA 1YW7A 3MR1A 2GU6A 5CDEA 5E2CA 3OOOA 4FLJA 2G6PA 4A6VA 5CE6A 3CB6A 4MATA 3FMRA 3RORA 4IF7A 4PV4A 3PKBA 2BHCA 4IECA 1KQ9A 4RGZ1 2V3ZA 2BWSA 1M35A 2BHBA 1C22A 3D27A 4IU6A 3O5VA 1XGOA 2HOWA 4QR8A 4S2RP 3IG4A 2EVCA 1PV9A 5CIKA 4U6EA 1WKMA 4IKSA 4U6ZA 5JHUA 3L7GA 3PEBA 2Q92A 1WN1A 4IKRA 2Q93A 2EVMA 5FCFA 4JUQA 2B3KA 2EA4A 4ZWUA 3IL0A 3TB5A 4FLKA 4U69A 5D6EA 5CNXA 1KP0A 1WBQA 3CTZA 4HXXA 3I7MA 4KM3A 2GG3A 5E5BA 2BWWA 2ADUA 2GGCA 4U76A 2B3HA 4EGEA 4U1BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D6F A;  2NQ6 A;  4ZWP A;  3PKE A;  3BIP A;  2GG7 A;  4U71 A;  4Z7M A;  5JFR A;  1XNZ A;  3IU9 A;  2BWX A;  1WLR A;  2GA2 A;  1R58 A;  2B3L A;  1BOA A;  2EVO A;  4R60 A;  3BIQ A;  3PKC A;  1Y1N A;  4U6J A;  4U6C A;  2GG0 A;  1C27 A;  2Q94 A;  4FLL A;  1CHM A;  2P99 A;  2BB7 A;  2GU7 A;  2BHD A;  1O0X A;  4S2T P;  1B59 A;  3FM3 A;  2EA2 A;  5FCH A;  4ZWO A;  5CDL A;  2ZSG A;  3MAT A;  4U70 A;  1A16 A;  4OOK A;  4FO8 A;  4FLI A;  1WY2 A;  1BN5 A;  2Q96 A;  3TAV A;  3MX6 A;  1WL6 A;  2GG9 A;  4IDY A;  4U6W A;  3PN9 A;  5CLS A;  2V3X A;  3OVK A;  4U75 A;  2OAZ A;  2GG5 A;  1WL9 A;  1N51 A;  3IU7 A;  2MAT A;  4S01 A;  1MAT A;  2GU5 A;  4IKT A;  2Q8K A;  2V6C A;  2BN7 A;  1QXY A;  2BH3 A;  3CB5 A;  2BWU A;  2P98 A;  1XGS A;  4IPA A;  3IU8 A;  4PNC A;  1C21 A;  2GG8 A;  3RVA A;  1YW9 A;  3PKD A;  2BWT A;  4FUK A;  2BWY A;  3PKA A;  1XGN A;  4RZZ A;  2BWV A;  3Q6D A;  1YVM A;  2GU4 A;  2GZ5 A;  2P9A A;  1YJ3 A;  3QOC A;  4ZNG A;  1B6A A;  2BHA A;  4RZY A;  2GGB A;  2NQ7 A;  4FO7 A;  1C23 A;  5CDV A;  1QXW A;  3L24 A;  2GTX A;  1QXZ A;  2DFI A;  1R5H A;  1W7V A;  4IKU A;  1QZY A;  1YW8 A;  1R5G A;  1KQ0 A;  2V3Y A;  4S00 A;  1C24 A;  5JI6 A;  4FKC A;  1XGM A;  2IW2 A;  3FMQ A;  1W2M A;  4A6W A;  2OKN A;  2GG2 A;  4U73 A;  2Q95 A;  1JAW A;  4B28 A;  3S6B A;  3BIT A;  1YW7 A;  3MR1 A;  2GU6 A;  5CDE A;  5E2C A;  3OOO A;  4FLJ A;  2G6P A;  4A6V A;  5CE6 A;  3CB6 A;  4MAT A;  3FMR A;  3ROR A;  4IF7 A;  4PV4 A;  3PKB A;  2BHC A;  4IEC A;  1KQ9 A;  4RGZ 1;  2V3Z A;  2BWS A;  1M35 A;  2BHB A;  1C22 A;  3D27 A;  4IU6 A;  3O5V A;  1XGO A;  2HOW A;  4QR8 A;  4S2R P;  3IG4 A;  2EVC A;  1PV9 A;  5CIK A;  4U6E A;  1WKM A;  4IKS A;  4U6Z A;  5JHU A;  3L7G A;  3PEB A;  2Q92 A;  1WN1 A;  4IKR A;  2Q93 A;  2EVM A;  5FCF A;  4JUQ A;  2B3K A;  2EA4 A;  4ZWU A;  3IL0 A;  3TB5 A;  4FLK A;  4U69 A;  5D6E A;  5CNX A;  1KP0 A;  1WBQ A;  3CTZ A;  4HXX A;  3I7M A;  4KM3 A;  2GG3 A;  5E5B A;  2BWW A;  2ADU A;  2GGC A;  4U76 A;  2B3H A;  4EGE A;  4U1B A; 
#chains in the Genus database with same CATH topology
 5D6F A;  2NQ6 A;  4ZWP A;  3PKE A;  3BIP A;  2GG7 A;  4U71 A;  4Z7M A;  5JFR A;  1XNZ A;  3IU9 A;  2BWX A;  1WLR A;  2GA2 A;  1R58 A;  2B3L A;  1BOA A;  2EVO A;  4R60 A;  3BIQ A;  3PKC A;  1Y1N A;  4U6J A;  4U6C A;  2GG0 A;  1C27 A;  2Q94 A;  4FLL A;  1CHM A;  2P99 A;  2BB7 A;  2GU7 A;  2BHD A;  1O0X A;  4S2T P;  1B59 A;  3FM3 A;  2EA2 A;  5FCH A;  4ZWO A;  5CDL A;  2ZSG A;  3MAT A;  4U70 A;  1A16 A;  4OOK A;  4FO8 A;  4FLI A;  1WY2 A;  1BN5 A;  2Q96 A;  3TAV A;  3MX6 A;  1WL6 A;  2GG9 A;  4IDY A;  4U6W A;  3PN9 A;  5CLS A;  2V3X A;  3OVK A;  4U75 A;  2OAZ A;  2GG5 A;  1WL9 A;  1N51 A;  3IU7 A;  2MAT A;  4S01 A;  1MAT A;  2GU5 A;  4IKT A;  2Q8K A;  2V6C A;  2BN7 A;  1QXY A;  2BH3 A;  3CB5 A;  2BWU A;  2P98 A;  1XGS A;  4IPA A;  3IU8 A;  4PNC A;  1C21 A;  2GG8 A;  3RVA A;  1YW9 A;  3PKD A;  2BWT A;  4FUK A;  2BWY A;  3PKA A;  1XGN A;  4RZZ A;  2BWV A;  3Q6D A;  1YVM A;  2GU4 A;  2GZ5 A;  2P9A A;  1YJ3 A;  3QOC A;  4ZNG A;  1B6A A;  2BHA A;  4RZY A;  2GGB A;  2NQ7 A;  4FO7 A;  1C23 A;  5CDV A;  1QXW A;  3L24 A;  2GTX A;  1QXZ A;  2DFI A;  1R5H A;  1W7V A;  4IKU A;  1QZY A;  1YW8 A;  1R5G A;  1KQ0 A;  2V3Y A;  4S00 A;  1C24 A;  5JI6 A;  4FKC A;  1XGM A;  2IW2 A;  3FMQ A;  1W2M A;  4A6W A;  2OKN A;  2GG2 A;  4U73 A;  2Q95 A;  1JAW A;  4B28 A;  3S6B A;  3BIT A;  1YW7 A;  3MR1 A;  2GU6 A;  5CDE A;  5E2C A;  3OOO A;  4FLJ A;  2G6P A;  4A6V A;  5CE6 A;  3CB6 A;  4MAT A;  3FMR A;  3ROR A;  4IF7 A;  4PV4 A;  3PKB A;  2BHC A;  4IEC A;  1KQ9 A;  4RGZ 1;  2V3Z A;  2BWS A;  1M35 A;  2BHB A;  1C22 A;  3D27 A;  4IU6 A;  3O5V A;  1XGO A;  2HOW A;  4QR8 A;  4S2R P;  3IG4 A;  2EVC A;  1PV9 A;  5CIK A;  4U6E A;  1WKM A;  4IKS A;  4U6Z A;  5JHU A;  3L7G A;  3PEB A;  2Q92 A;  1WN1 A;  4IKR A;  2Q93 A;  2EVM A;  5FCF A;  4JUQ A;  2B3K A;  2EA4 A;  4ZWU A;  3IL0 A;  3TB5 A;  4FLK A;  4U69 A;  5D6E A;  5CNX A;  1KP0 A;  1WBQ A;  3CTZ A;  4HXX A;  3I7M A;  4KM3 A;  2GG3 A;  5E5B A;  2BWW A;  2ADU A;  2GGC A;  4U76 A;  2B3H A;  4EGE A;  4U1B A; 
#chains in the Genus database with same CATH homology
 5D6F A;  2NQ6 A;  4ZWP A;  3PKE A;  3BIP A;  2GG7 A;  4U71 A;  4Z7M A;  5JFR A;  1XNZ A;  3IU9 A;  2BWX A;  1WLR A;  2GA2 A;  1R58 A;  2B3L A;  1BOA A;  2EVO A;  4R60 A;  3BIQ A;  3PKC A;  1Y1N A;  4U6J A;  4U6C A;  2GG0 A;  1C27 A;  2Q94 A;  4FLL A;  1CHM A;  2P99 A;  2BB7 A;  2GU7 A;  2BHD A;  1O0X A;  4S2T P;  1B59 A;  3FM3 A;  2EA2 A;  5FCH A;  4ZWO A;  5CDL A;  2ZSG A;  3MAT A;  4U70 A;  1A16 A;  4OOK A;  4FO8 A;  4FLI A;  1WY2 A;  1BN5 A;  2Q96 A;  3TAV A;  3MX6 A;  1WL6 A;  2GG9 A;  4IDY A;  4U6W A;  3PN9 A;  5CLS A;  2V3X A;  3OVK A;  4U75 A;  2OAZ A;  2GG5 A;  1WL9 A;  1N51 A;  3IU7 A;  2MAT A;  4S01 A;  1MAT A;  2GU5 A;  4IKT A;  2Q8K A;  2V6C A;  2BN7 A;  1QXY A;  2BH3 A;  3CB5 A;  2BWU A;  2P98 A;  1XGS A;  4IPA A;  3IU8 A;  4PNC A;  1C21 A;  2GG8 A;  3RVA A;  1YW9 A;  3PKD A;  2BWT A;  4FUK A;  2BWY A;  3PKA A;  1XGN A;  4RZZ A;  2BWV A;  3Q6D A;  1YVM A;  2GU4 A;  2GZ5 A;  2P9A A;  1YJ3 A;  3QOC A;  4ZNG A;  1B6A A;  2BHA A;  4RZY A;  2GGB A;  2NQ7 A;  4FO7 A;  1C23 A;  5CDV A;  1QXW A;  3L24 A;  2GTX A;  1QXZ A;  2DFI A;  1R5H A;  1W7V A;  4IKU A;  1QZY A;  1YW8 A;  1R5G A;  1KQ0 A;  2V3Y A;  4S00 A;  1C24 A;  5JI6 A;  4FKC A;  1XGM A;  2IW2 A;  3FMQ A;  1W2M A;  4A6W A;  2OKN A;  2GG2 A;  4U73 A;  2Q95 A;  1JAW A;  4B28 A;  3S6B A;  3BIT A;  1YW7 A;  3MR1 A;  2GU6 A;  5CDE A;  5E2C A;  3OOO A;  4FLJ A;  2G6P A;  4A6V A;  5CE6 A;  3CB6 A;  4MAT A;  3FMR A;  3ROR A;  4IF7 A;  4PV4 A;  3PKB A;  2BHC A;  4IEC A;  1KQ9 A;  4RGZ 1;  2V3Z A;  2BWS A;  1M35 A;  2BHB A;  1C22 A;  3D27 A;  4IU6 A;  3O5V A;  1XGO A;  2HOW A;  4QR8 A;  4S2R P;  3IG4 A;  2EVC A;  1PV9 A;  5CIK A;  4U6E A;  1WKM A;  4IKS A;  4U6Z A;  5JHU A;  3L7G A;  3PEB A;  2Q92 A;  1WN1 A;  4IKR A;  2Q93 A;  2EVM A;  5FCF A;  4JUQ A;  2B3K A;  2EA4 A;  4ZWU A;  3IL0 A;  3TB5 A;  4FLK A;  4U69 A;  5D6E A;  5CNX A;  1KP0 A;  1WBQ A;  3CTZ A;  4HXX A;  3I7M A;  4KM3 A;  2GG3 A;  5E5B A;  2BWW A;  2ADU A;  2GGC A;  4U76 A;  2B3H A;  4EGE A;  4U1B A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...