3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative metallopeptidase
publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
molecule tags Hydrolase
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
2BHCA 2BWUA 1WL6A 3OOOA 4S00A 4PV4A 2BWXA 5E2CA 1WBQA 3BITA 3CB5A 4RZZA 1PV9A 3CB6A 2HOWA 2ZSGA 1WLRA 5CNXA 2BHBA 4S2RP 5CDVA 1CHMA 1WL9A 2V3YA 2BWWA 3L24A 3O5VA 1JAWA 5CDLA 2BHDA 3CTZA 3I7MA 1W2MA 2V3ZA 2OKNA 3OVKA 4B28A 3IL0A 4FKCA 4ZWOA 3IG4A 5FCFA 2BHAA 4ZNGA 3PEBA 4ZWPA 4RGZ1 3L7GA 5CDEA 2BN7A 4EGEA 1KP0A 5CIKA 4QR8A 2BWVA 4ZWUA 4S2TP 2IW2A 3Q6DA 3QOCA 3BIQA 2BH3A 5FCHA 2V3XA 4S01A 1A16A 2BWSA 2BWYA 3RVAA 1WN1A 1N51A 3BIPA 4R60A 1M35A 4RZYA 1WY2A 3PN9A 2BWTA 5CE6A 5E5BA 1W7VA
chains in the Genus database with same CATH superfamily
2BHCA 2BWUA 1WL6A 3OOOA 4S00A 4PV4A 2BWXA 5E2CA 1WBQA 3BITA 3CB5A 4RZZA 1PV9A 3CB6A 2HOWA 2ZSGA 1WLRA 5CNXA 2BHBA 4S2RP 5CDVA 1CHMA 1WL9A 2V3YA 2BWWA 3L24A 3O5VA 1JAWA 5CDLA 2BHDA 3CTZA 3I7MA 1W2MA 2V3ZA 2OKNA 3OVKA 4B28A 3IL0A 4FKCA 4ZWOA 3IG4A 5FCFA 2BHAA 4ZNGA 3PEBA 4ZWPA 4RGZ1 3L7GA 5CDEA 2BN7A 4EGEA 1KP0A 5CIKA 4QR8A 2BWVA 4ZWUA 4S2TP 2IW2A 3Q6DA 3QOCA 3BIQA 2BH3A 5FCHA 2V3XA 4S01A 1A16A 2BWSA 2BWYA 3RVAA 1WN1A 1N51A 3BIPA 4R60A 1M35A 4RZYA 1WY2A 3PN9A 2BWTA 5CE6A 5E5BA 1W7VA
chains in the Genus database with same CATH topology
2BHCA 2BWUA 1WL6A 3OOOA 4S00A 4PV4A 2BWXA 5E2CA 1WBQA 3BITA 3CB5A 4RZZA 1PV9A 3CB6A 2HOWA 2ZSGA 1WLRA 5CNXA 2BHBA 4S2RP 5CDVA 1CHMA 1WL9A 2V3YA 2BWWA 3L24A 3O5VA 1JAWA 5CDLA 2BHDA 3CTZA 3I7MA 1W2MA 2V3ZA 2OKNA 3OVKA 4B28A 3IL0A 4FKCA 4ZWOA 3IG4A 5FCFA 2BHAA 4ZNGA 3PEBA 4ZWPA 4RGZ1 3L7GA 5CDEA 2BN7A 4EGEA 1KP0A 5CIKA 4QR8A 2BWVA 4ZWUA 4S2TP 2IW2A 3Q6DA 3QOCA 3BIQA 2BH3A 5FCHA 2V3XA 4S01A 1A16A 2BWSA 2BWYA 3RVAA 1WN1A 1N51A 3BIPA 4R60A 1M35A 4RZYA 1WY2A 3PN9A 2BWTA 5CE6A 5E5BA 1W7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BHC A;  2BWU A;  1WL6 A;  3OOO A;  4S00 A;  4PV4 A;  2BWX A;  5E2C A;  1WBQ A;  3BIT A;  3CB5 A;  4RZZ A;  1PV9 A;  3CB6 A;  2HOW A;  2ZSG A;  1WLR A;  5CNX A;  2BHB A;  4S2R P;  5CDV A;  1CHM A;  1WL9 A;  2V3Y A;  2BWW A;  3L24 A;  3O5V A;  1JAW A;  5CDL A;  2BHD A;  3CTZ A;  3I7M A;  1W2M A;  2V3Z A;  2OKN A;  3OVK A;  4B28 A;  3IL0 A;  4FKC A;  4ZWO A;  3IG4 A;  5FCF A;  2BHA A;  4ZNG A;  3PEB A;  4ZWP A;  4RGZ 1;  3L7G A;  5CDE A;  2BN7 A;  4EGE A;  1KP0 A;  5CIK A;  4QR8 A;  2BWV A;  4ZWU A;  4S2T P;  2IW2 A;  3Q6D A;  3QOC A;  3BIQ A;  2BH3 A;  5FCH A;  2V3X A;  4S01 A;  1A16 A;  2BWS A;  2BWY A;  3RVA A;  1WN1 A;  1N51 A;  3BIP A;  4R60 A;  1M35 A;  4RZY A;  1WY2 A;  3PN9 A;  2BWT A;  5CE6 A;  5E5B A;  1W7V A; 
#chains in the Genus database with same CATH topology
 2BHC A;  2BWU A;  1WL6 A;  3OOO A;  4S00 A;  4PV4 A;  2BWX A;  5E2C A;  1WBQ A;  3BIT A;  3CB5 A;  4RZZ A;  1PV9 A;  3CB6 A;  2HOW A;  2ZSG A;  1WLR A;  5CNX A;  2BHB A;  4S2R P;  5CDV A;  1CHM A;  1WL9 A;  2V3Y A;  2BWW A;  3L24 A;  3O5V A;  1JAW A;  5CDL A;  2BHD A;  3CTZ A;  3I7M A;  1W2M A;  2V3Z A;  2OKN A;  3OVK A;  4B28 A;  3IL0 A;  4FKC A;  4ZWO A;  3IG4 A;  5FCF A;  2BHA A;  4ZNG A;  3PEB A;  4ZWP A;  4RGZ 1;  3L7G A;  5CDE A;  2BN7 A;  4EGE A;  1KP0 A;  5CIK A;  4QR8 A;  2BWV A;  4ZWU A;  4S2T P;  2IW2 A;  3Q6D A;  3QOC A;  3BIQ A;  2BH3 A;  5FCH A;  2V3X A;  4S01 A;  1A16 A;  2BWS A;  2BWY A;  3RVA A;  1WN1 A;  1N51 A;  3BIP A;  4R60 A;  1M35 A;  4RZY A;  1WY2 A;  3PN9 A;  2BWT A;  5CE6 A;  5E5B A;  1W7V A; 
#chains in the Genus database with same CATH homology
 2BHC A;  2BWU A;  1WL6 A;  3OOO A;  4S00 A;  4PV4 A;  2BWX A;  5E2C A;  1WBQ A;  3BIT A;  3CB5 A;  4RZZ A;  1PV9 A;  3CB6 A;  2HOW A;  2ZSG A;  1WLR A;  5CNX A;  2BHB A;  4S2R P;  5CDV A;  1CHM A;  1WL9 A;  2V3Y A;  2BWW A;  3L24 A;  3O5V A;  1JAW A;  5CDL A;  2BHD A;  3CTZ A;  3I7M A;  1W2M A;  2V3Z A;  2OKN A;  3OVK A;  4B28 A;  3IL0 A;  4FKC A;  4ZWO A;  3IG4 A;  5FCF A;  2BHA A;  4ZNG A;  3PEB A;  4ZWP A;  4RGZ 1;  3L7G A;  5CDE A;  2BN7 A;  4EGE A;  1KP0 A;  5CIK A;  4QR8 A;  2BWV A;  4ZWU A;  4S2T P;  2IW2 A;  3Q6D A;  3QOC A;  3BIQ A;  2BH3 A;  5FCH A;  2V3X A;  4S01 A;  1A16 A;  2BWS A;  2BWY A;  3RVA A;  1WN1 A;  1N51 A;  3BIP A;  4R60 A;  1M35 A;  4RZY A;  1WY2 A;  3PN9 A;  2BWT A;  5CE6 A;  5E5B A;  1W7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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