3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative metallopeptidase
publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
2OKNA 5E5BA 1A16A 2BWUA 5E2CA 3PN9A 3CB5A 3BIPA 1WBQA 3CTZA 2BHDA 1W2MA 1W7VA 4RGZ1 4S00A 4PV4A 2BHAA 2V3XA 2BWVA 3CB6A 4S01A 5FCFA 2BWSA 3O5VA 5CE6A 1CHMA 4EGEA 1WLRA 1M35A 1KP0A 3Q6DA 4R60A 4QR8A 2ZSGA 1WN1A 5CNXA 3IL0A 3RVAA 3PEBA 1PV9A 3BIQA 2V3YA 3L24A 4S2TP 2BWYA 1JAWA 1WL6A 2V3ZA 1WY2A 2HOWA 1N51A 4RZZA 2BWXA 3I7MA 5CDLA 5CIKA 2BN7A 2BWWA 3OOOA 4ZNGA 4ZWUA 3L7GA 3IG4A 2BHBA 5CDVA 2IW2A 2BWTA 4ZWOA 3BITA 2BH3A 1WL9A 4B28A 4ZWPA 4S2RP 5CDEA 2BHCA 5FCHA 3OVKA 4RZYA 4FKCA 3QOCA
chains in the Genus database with same CATH superfamily
2OKNA 5E5BA 1A16A 2BWUA 5E2CA 3PN9A 3CB5A 3BIPA 1WBQA 3CTZA 2BHDA 1W2MA 1W7VA 4RGZ1 4S00A 4PV4A 2BHAA 2V3XA 2BWVA 3CB6A 4S01A 5FCFA 2BWSA 3O5VA 5CE6A 1CHMA 4EGEA 1WLRA 1M35A 1KP0A 3Q6DA 4R60A 4QR8A 2ZSGA 1WN1A 5CNXA 3IL0A 3RVAA 3PEBA 1PV9A 3BIQA 2V3YA 3L24A 4S2TP 2BWYA 1JAWA 1WL6A 2V3ZA 1WY2A 2HOWA 1N51A 4RZZA 2BWXA 3I7MA 5CDLA 5CIKA 2BN7A 2BWWA 3OOOA 4ZNGA 4ZWUA 3L7GA 3IG4A 2BHBA 5CDVA 2IW2A 2BWTA 4ZWOA 3BITA 2BH3A 1WL9A 4B28A 4ZWPA 4S2RP 5CDEA 2BHCA 5FCHA 3OVKA 4RZYA 4FKCA 3QOCA
chains in the Genus database with same CATH topology
2OKNA 5E5BA 1A16A 2BWUA 5E2CA 3PN9A 3CB5A 3BIPA 1WBQA 3CTZA 2BHDA 1W2MA 1W7VA 4RGZ1 4S00A 4PV4A 2BHAA 2V3XA 2BWVA 3CB6A 4S01A 5FCFA 2BWSA 3O5VA 5CE6A 1CHMA 4EGEA 1WLRA 1M35A 1KP0A 3Q6DA 4R60A 4QR8A 2ZSGA 1WN1A 5CNXA 3IL0A 3RVAA 3PEBA 1PV9A 3BIQA 2V3YA 3L24A 4S2TP 2BWYA 1JAWA 1WL6A 2V3ZA 1WY2A 2HOWA 1N51A 4RZZA 2BWXA 3I7MA 5CDLA 5CIKA 2BN7A 2BWWA 3OOOA 4ZNGA 4ZWUA 3L7GA 3IG4A 2BHBA 5CDVA 2IW2A 2BWTA 4ZWOA 3BITA 2BH3A 1WL9A 4B28A 4ZWPA 4S2RP 5CDEA 2BHCA 5FCHA 3OVKA 4RZYA 4FKCA 3QOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OKN A;  5E5B A;  1A16 A;  2BWU A;  5E2C A;  3PN9 A;  3CB5 A;  3BIP A;  1WBQ A;  3CTZ A;  2BHD A;  1W2M A;  1W7V A;  4RGZ 1;  4S00 A;  4PV4 A;  2BHA A;  2V3X A;  2BWV A;  3CB6 A;  4S01 A;  5FCF A;  2BWS A;  3O5V A;  5CE6 A;  1CHM A;  4EGE A;  1WLR A;  1M35 A;  1KP0 A;  3Q6D A;  4R60 A;  4QR8 A;  2ZSG A;  1WN1 A;  5CNX A;  3IL0 A;  3RVA A;  3PEB A;  1PV9 A;  3BIQ A;  2V3Y A;  3L24 A;  4S2T P;  2BWY A;  1JAW A;  1WL6 A;  2V3Z A;  1WY2 A;  2HOW A;  1N51 A;  4RZZ A;  2BWX A;  3I7M A;  5CDL A;  5CIK A;  2BN7 A;  2BWW A;  3OOO A;  4ZNG A;  4ZWU A;  3L7G A;  3IG4 A;  2BHB A;  5CDV A;  2IW2 A;  2BWT A;  4ZWO A;  3BIT A;  2BH3 A;  1WL9 A;  4B28 A;  4ZWP A;  4S2R P;  5CDE A;  2BHC A;  5FCH A;  3OVK A;  4RZY A;  4FKC A;  3QOC A; 
#chains in the Genus database with same CATH topology
 2OKN A;  5E5B A;  1A16 A;  2BWU A;  5E2C A;  3PN9 A;  3CB5 A;  3BIP A;  1WBQ A;  3CTZ A;  2BHD A;  1W2M A;  1W7V A;  4RGZ 1;  4S00 A;  4PV4 A;  2BHA A;  2V3X A;  2BWV A;  3CB6 A;  4S01 A;  5FCF A;  2BWS A;  3O5V A;  5CE6 A;  1CHM A;  4EGE A;  1WLR A;  1M35 A;  1KP0 A;  3Q6D A;  4R60 A;  4QR8 A;  2ZSG A;  1WN1 A;  5CNX A;  3IL0 A;  3RVA A;  3PEB A;  1PV9 A;  3BIQ A;  2V3Y A;  3L24 A;  4S2T P;  2BWY A;  1JAW A;  1WL6 A;  2V3Z A;  1WY2 A;  2HOW A;  1N51 A;  4RZZ A;  2BWX A;  3I7M A;  5CDL A;  5CIK A;  2BN7 A;  2BWW A;  3OOO A;  4ZNG A;  4ZWU A;  3L7G A;  3IG4 A;  2BHB A;  5CDV A;  2IW2 A;  2BWT A;  4ZWO A;  3BIT A;  2BH3 A;  1WL9 A;  4B28 A;  4ZWP A;  4S2R P;  5CDE A;  2BHC A;  5FCH A;  3OVK A;  4RZY A;  4FKC A;  3QOC A; 
#chains in the Genus database with same CATH homology
 2OKN A;  5E5B A;  1A16 A;  2BWU A;  5E2C A;  3PN9 A;  3CB5 A;  3BIP A;  1WBQ A;  3CTZ A;  2BHD A;  1W2M A;  1W7V A;  4RGZ 1;  4S00 A;  4PV4 A;  2BHA A;  2V3X A;  2BWV A;  3CB6 A;  4S01 A;  5FCF A;  2BWS A;  3O5V A;  5CE6 A;  1CHM A;  4EGE A;  1WLR A;  1M35 A;  1KP0 A;  3Q6D A;  4R60 A;  4QR8 A;  2ZSG A;  1WN1 A;  5CNX A;  3IL0 A;  3RVA A;  3PEB A;  1PV9 A;  3BIQ A;  2V3Y A;  3L24 A;  4S2T P;  2BWY A;  1JAW A;  1WL6 A;  2V3Z A;  1WY2 A;  2HOW A;  1N51 A;  4RZZ A;  2BWX A;  3I7M A;  5CDL A;  5CIK A;  2BN7 A;  2BWW A;  3OOO A;  4ZNG A;  4ZWU A;  3L7G A;  3IG4 A;  2BHB A;  5CDV A;  2IW2 A;  2BWT A;  4ZWO A;  3BIT A;  2BH3 A;  1WL9 A;  4B28 A;  4ZWP A;  4S2R P;  5CDE A;  2BHC A;  5FCH A;  3OVK A;  4RZY A;  4FKC A;  3QOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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