3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
molecule tags Hydrolase
molecule keywords Putative metallopeptidase
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
2BWTA 5CNXA 1WLRA 1W2MA 1W7VA 3CB6A 3L24A 4ZWOA 4RZZA 1WL9A 2BWUA 1N51A 2BHDA 2BWYA 5CIKA 4EGEA 4RGZ1 5E2CA 4ZWPA 4PV4A 3CB5A 3OOOA 1PV9A 2V3ZA 1WN1A 1M35A 3PEBA 3Q6DA 3OVKA 4ZWUA 5CE6A 5FCHA 2BWVA 3I7MA 4QR8A 4B28A 2V3YA 3O5VA 2BN7A 1WL6A 3CTZA 3IG4A 2BHCA 2V3XA 4S00A 1JAWA 1A16A 1WY2A 2BH3A 3RVAA 5FCFA 1KP0A 4FKCA 2ZSGA 2HOWA 3IL0A 2BHBA 4S01A 4S2RP 5E5BA 5CDLA 2IW2A 3L7GA 4R60A 2BWSA 5CDVA 3BITA 4S2TP 3QOCA 1CHMA 2BWWA 2BHAA 2OKNA 3PN9A 4RZYA 3BIQA 4ZNGA 3BIPA 1WBQA 5CDEA 2BWXA
chains in the Genus database with same CATH superfamily
2BWTA 5CNXA 1WLRA 1W2MA 1W7VA 3CB6A 3L24A 4ZWOA 4RZZA 1WL9A 2BWUA 1N51A 2BHDA 2BWYA 5CIKA 4EGEA 4RGZ1 5E2CA 4ZWPA 4PV4A 3CB5A 3OOOA 1PV9A 2V3ZA 1WN1A 1M35A 3PEBA 3Q6DA 3OVKA 4ZWUA 5CE6A 5FCHA 2BWVA 3I7MA 4QR8A 4B28A 2V3YA 3O5VA 2BN7A 1WL6A 3CTZA 3IG4A 2BHCA 2V3XA 4S00A 1JAWA 1A16A 1WY2A 2BH3A 3RVAA 5FCFA 1KP0A 4FKCA 2ZSGA 2HOWA 3IL0A 2BHBA 4S01A 4S2RP 5E5BA 5CDLA 2IW2A 3L7GA 4R60A 2BWSA 5CDVA 3BITA 4S2TP 3QOCA 1CHMA 2BWWA 2BHAA 2OKNA 3PN9A 4RZYA 3BIQA 4ZNGA 3BIPA 1WBQA 5CDEA 2BWXA
chains in the Genus database with same CATH topology
2BWTA 5CNXA 1WLRA 1W2MA 1W7VA 3CB6A 3L24A 4ZWOA 4RZZA 1WL9A 2BWUA 1N51A 2BHDA 2BWYA 5CIKA 4EGEA 4RGZ1 5E2CA 4ZWPA 4PV4A 3CB5A 3OOOA 1PV9A 2V3ZA 1WN1A 1M35A 3PEBA 3Q6DA 3OVKA 4ZWUA 5CE6A 5FCHA 2BWVA 3I7MA 4QR8A 4B28A 2V3YA 3O5VA 2BN7A 1WL6A 3CTZA 3IG4A 2BHCA 2V3XA 4S00A 1JAWA 1A16A 1WY2A 2BH3A 3RVAA 5FCFA 1KP0A 4FKCA 2ZSGA 2HOWA 3IL0A 2BHBA 4S01A 4S2RP 5E5BA 5CDLA 2IW2A 3L7GA 4R60A 2BWSA 5CDVA 3BITA 4S2TP 3QOCA 1CHMA 2BWWA 2BHAA 2OKNA 3PN9A 4RZYA 3BIQA 4ZNGA 3BIPA 1WBQA 5CDEA 2BWXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWT A;  5CNX A;  1WLR A;  1W2M A;  1W7V A;  3CB6 A;  3L24 A;  4ZWO A;  4RZZ A;  1WL9 A;  2BWU A;  1N51 A;  2BHD A;  2BWY A;  5CIK A;  4EGE A;  4RGZ 1;  5E2C A;  4ZWP A;  4PV4 A;  3CB5 A;  3OOO A;  1PV9 A;  2V3Z A;  1WN1 A;  1M35 A;  3PEB A;  3Q6D A;  3OVK A;  4ZWU A;  5CE6 A;  5FCH A;  2BWV A;  3I7M A;  4QR8 A;  4B28 A;  2V3Y A;  3O5V A;  2BN7 A;  1WL6 A;  3CTZ A;  3IG4 A;  2BHC A;  2V3X A;  4S00 A;  1JAW A;  1A16 A;  1WY2 A;  2BH3 A;  3RVA A;  5FCF A;  1KP0 A;  4FKC A;  2ZSG A;  2HOW A;  3IL0 A;  2BHB A;  4S01 A;  4S2R P;  5E5B A;  5CDL A;  2IW2 A;  3L7G A;  4R60 A;  2BWS A;  5CDV A;  3BIT A;  4S2T P;  3QOC A;  1CHM A;  2BWW A;  2BHA A;  2OKN A;  3PN9 A;  4RZY A;  3BIQ A;  4ZNG A;  3BIP A;  1WBQ A;  5CDE A;  2BWX A; 
#chains in the Genus database with same CATH topology
 2BWT A;  5CNX A;  1WLR A;  1W2M A;  1W7V A;  3CB6 A;  3L24 A;  4ZWO A;  4RZZ A;  1WL9 A;  2BWU A;  1N51 A;  2BHD A;  2BWY A;  5CIK A;  4EGE A;  4RGZ 1;  5E2C A;  4ZWP A;  4PV4 A;  3CB5 A;  3OOO A;  1PV9 A;  2V3Z A;  1WN1 A;  1M35 A;  3PEB A;  3Q6D A;  3OVK A;  4ZWU A;  5CE6 A;  5FCH A;  2BWV A;  3I7M A;  4QR8 A;  4B28 A;  2V3Y A;  3O5V A;  2BN7 A;  1WL6 A;  3CTZ A;  3IG4 A;  2BHC A;  2V3X A;  4S00 A;  1JAW A;  1A16 A;  1WY2 A;  2BH3 A;  3RVA A;  5FCF A;  1KP0 A;  4FKC A;  2ZSG A;  2HOW A;  3IL0 A;  2BHB A;  4S01 A;  4S2R P;  5E5B A;  5CDL A;  2IW2 A;  3L7G A;  4R60 A;  2BWS A;  5CDV A;  3BIT A;  4S2T P;  3QOC A;  1CHM A;  2BWW A;  2BHA A;  2OKN A;  3PN9 A;  4RZY A;  3BIQ A;  4ZNG A;  3BIP A;  1WBQ A;  5CDE A;  2BWX A; 
#chains in the Genus database with same CATH homology
 2BWT A;  5CNX A;  1WLR A;  1W2M A;  1W7V A;  3CB6 A;  3L24 A;  4ZWO A;  4RZZ A;  1WL9 A;  2BWU A;  1N51 A;  2BHD A;  2BWY A;  5CIK A;  4EGE A;  4RGZ 1;  5E2C A;  4ZWP A;  4PV4 A;  3CB5 A;  3OOO A;  1PV9 A;  2V3Z A;  1WN1 A;  1M35 A;  3PEB A;  3Q6D A;  3OVK A;  4ZWU A;  5CE6 A;  5FCH A;  2BWV A;  3I7M A;  4QR8 A;  4B28 A;  2V3Y A;  3O5V A;  2BN7 A;  1WL6 A;  3CTZ A;  3IG4 A;  2BHC A;  2V3X A;  4S00 A;  1JAW A;  1A16 A;  1WY2 A;  2BH3 A;  3RVA A;  5FCF A;  1KP0 A;  4FKC A;  2ZSG A;  2HOW A;  3IL0 A;  2BHB A;  4S01 A;  4S2R P;  5E5B A;  5CDL A;  2IW2 A;  3L7G A;  4R60 A;  2BWS A;  5CDV A;  3BIT A;  4S2T P;  3QOC A;  1CHM A;  2BWW A;  2BHA A;  2OKN A;  3PN9 A;  4RZY A;  3BIQ A;  4ZNG A;  3BIP A;  1WBQ A;  5CDE A;  2BWX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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