3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
b'APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative metallopeptidase
publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
molecule tags Hydrolase
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
4S2TP 4ZWPA 2BWSA 2BH3A 5FCFA 3OVKA 4QR8A 3IG4A 1WL6A 3PN9A 5CNXA 2BN7A 2BWTA 4FKCA 2BHBA 2BWUA 3CB6A 3CB5A 2IW2A 3RVAA 4S2RP 4RGZ1 2V3ZA 1W7VA 1WLRA 5E5BA 4ZNGA 5CE6A 1WBQA 2BWVA 1M35A 1PV9A 3BITA 2BWWA 1WY2A 4R60A 3I7MA 4B28A 1W2MA 3QOCA 5FCHA 2ZSGA 4ZWUA 3IL0A 4S00A 2HOWA 2V3XA 5E2CA 5CDLA 1N51A 1KP0A 2BWYA 3BIQA 2BHDA 4EGEA 3L24A 2BHAA 3BIPA 1JAWA 4RZZA 1WL9A 2BWXA 3CTZA 1CHMA 4PV4A 2BHCA 3PEBA 5CDEA 3Q6DA 4RZYA 1WN1A 5CDVA 4ZWOA 3OOOA 5CIKA 2OKNA 1A16A 3L7GA 4S01A 3O5VA 2V3YA
chains in the Genus database with same CATH superfamily
4S2TP 4ZWPA 2BWSA 2BH3A 5FCFA 3OVKA 4QR8A 3IG4A 1WL6A 3PN9A 5CNXA 2BN7A 2BWTA 4FKCA 2BHBA 2BWUA 3CB6A 3CB5A 2IW2A 3RVAA 4S2RP 4RGZ1 2V3ZA 1W7VA 1WLRA 5E5BA 4ZNGA 5CE6A 1WBQA 2BWVA 1M35A 1PV9A 3BITA 2BWWA 1WY2A 4R60A 3I7MA 4B28A 1W2MA 3QOCA 5FCHA 2ZSGA 4ZWUA 3IL0A 4S00A 2HOWA 2V3XA 5E2CA 5CDLA 1N51A 1KP0A 2BWYA 3BIQA 2BHDA 4EGEA 3L24A 2BHAA 3BIPA 1JAWA 4RZZA 1WL9A 2BWXA 3CTZA 1CHMA 4PV4A 2BHCA 3PEBA 5CDEA 3Q6DA 4RZYA 1WN1A 5CDVA 4ZWOA 3OOOA 5CIKA 2OKNA 1A16A 3L7GA 4S01A 3O5VA 2V3YA
chains in the Genus database with same CATH topology
4S2TP 4ZWPA 2BWSA 2BH3A 5FCFA 3OVKA 4QR8A 3IG4A 1WL6A 3PN9A 5CNXA 2BN7A 2BWTA 4FKCA 2BHBA 2BWUA 3CB6A 3CB5A 2IW2A 3RVAA 4S2RP 4RGZ1 2V3ZA 1W7VA 1WLRA 5E5BA 4ZNGA 5CE6A 1WBQA 2BWVA 1M35A 1PV9A 3BITA 2BWWA 1WY2A 4R60A 3I7MA 4B28A 1W2MA 3QOCA 5FCHA 2ZSGA 4ZWUA 3IL0A 4S00A 2HOWA 2V3XA 5E2CA 5CDLA 1N51A 1KP0A 2BWYA 3BIQA 2BHDA 4EGEA 3L24A 2BHAA 3BIPA 1JAWA 4RZZA 1WL9A 2BWXA 3CTZA 1CHMA 4PV4A 2BHCA 3PEBA 5CDEA 3Q6DA 4RZYA 1WN1A 5CDVA 4ZWOA 3OOOA 5CIKA 2OKNA 1A16A 3L7GA 4S01A 3O5VA 2V3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S2T P;  4ZWP A;  2BWS A;  2BH3 A;  5FCF A;  3OVK A;  4QR8 A;  3IG4 A;  1WL6 A;  3PN9 A;  5CNX A;  2BN7 A;  2BWT A;  4FKC A;  2BHB A;  2BWU A;  3CB6 A;  3CB5 A;  2IW2 A;  3RVA A;  4S2R P;  4RGZ 1;  2V3Z A;  1W7V A;  1WLR A;  5E5B A;  4ZNG A;  5CE6 A;  1WBQ A;  2BWV A;  1M35 A;  1PV9 A;  3BIT A;  2BWW A;  1WY2 A;  4R60 A;  3I7M A;  4B28 A;  1W2M A;  3QOC A;  5FCH A;  2ZSG A;  4ZWU A;  3IL0 A;  4S00 A;  2HOW A;  2V3X A;  5E2C A;  5CDL A;  1N51 A;  1KP0 A;  2BWY A;  3BIQ A;  2BHD A;  4EGE A;  3L24 A;  2BHA A;  3BIP A;  1JAW A;  4RZZ A;  1WL9 A;  2BWX A;  3CTZ A;  1CHM A;  4PV4 A;  2BHC A;  3PEB A;  5CDE A;  3Q6D A;  4RZY A;  1WN1 A;  5CDV A;  4ZWO A;  3OOO A;  5CIK A;  2OKN A;  1A16 A;  3L7G A;  4S01 A;  3O5V A;  2V3Y A; 
#chains in the Genus database with same CATH topology
 4S2T P;  4ZWP A;  2BWS A;  2BH3 A;  5FCF A;  3OVK A;  4QR8 A;  3IG4 A;  1WL6 A;  3PN9 A;  5CNX A;  2BN7 A;  2BWT A;  4FKC A;  2BHB A;  2BWU A;  3CB6 A;  3CB5 A;  2IW2 A;  3RVA A;  4S2R P;  4RGZ 1;  2V3Z A;  1W7V A;  1WLR A;  5E5B A;  4ZNG A;  5CE6 A;  1WBQ A;  2BWV A;  1M35 A;  1PV9 A;  3BIT A;  2BWW A;  1WY2 A;  4R60 A;  3I7M A;  4B28 A;  1W2M A;  3QOC A;  5FCH A;  2ZSG A;  4ZWU A;  3IL0 A;  4S00 A;  2HOW A;  2V3X A;  5E2C A;  5CDL A;  1N51 A;  1KP0 A;  2BWY A;  3BIQ A;  2BHD A;  4EGE A;  3L24 A;  2BHA A;  3BIP A;  1JAW A;  4RZZ A;  1WL9 A;  2BWX A;  3CTZ A;  1CHM A;  4PV4 A;  2BHC A;  3PEB A;  5CDE A;  3Q6D A;  4RZY A;  1WN1 A;  5CDV A;  4ZWO A;  3OOO A;  5CIK A;  2OKN A;  1A16 A;  3L7G A;  4S01 A;  3O5V A;  2V3Y A; 
#chains in the Genus database with same CATH homology
 4S2T P;  4ZWP A;  2BWS A;  2BH3 A;  5FCF A;  3OVK A;  4QR8 A;  3IG4 A;  1WL6 A;  3PN9 A;  5CNX A;  2BN7 A;  2BWT A;  4FKC A;  2BHB A;  2BWU A;  3CB6 A;  3CB5 A;  2IW2 A;  3RVA A;  4S2R P;  4RGZ 1;  2V3Z A;  1W7V A;  1WLR A;  5E5B A;  4ZNG A;  5CE6 A;  1WBQ A;  2BWV A;  1M35 A;  1PV9 A;  3BIT A;  2BWW A;  1WY2 A;  4R60 A;  3I7M A;  4B28 A;  1W2M A;  3QOC A;  5FCH A;  2ZSG A;  4ZWU A;  3IL0 A;  4S00 A;  2HOW A;  2V3X A;  5E2C A;  5CDL A;  1N51 A;  1KP0 A;  2BWY A;  3BIQ A;  2BHD A;  4EGE A;  3L24 A;  2BHA A;  3BIP A;  1JAW A;  4RZZ A;  1WL9 A;  2BWX A;  3CTZ A;  1CHM A;  4PV4 A;  2BHC A;  3PEB A;  5CDE A;  3Q6D A;  4RZY A;  1WN1 A;  5CDV A;  4ZWO A;  3OOO A;  5CIK A;  2OKN A;  1A16 A;  3L7G A;  4S01 A;  3O5V A;  2V3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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