3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative metallopeptidase
publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
molecule tags Hydrolase
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
3CB5A 2BWTA 1W7VA 2BHCA 2BWXA 5E2CA 2BWVA 5E5BA 4S00A 4R60A 2BWYA 3BITA 5CE6A 1WL6A 3OVKA 2BWWA 2BHAA 1WY2A 2BHDA 3L7GA 3PEBA 4ZWOA 1WN1A 2V3YA 2BH3A 4RGZ1 3Q6DA 4S01A 3IL0A 2ZSGA 2V3XA 4S2RP 4ZNGA 2BWUA 3RVAA 3CTZA 2V3ZA 1CHMA 4ZWUA 4B28A 2BHBA 3O5VA 2IW2A 4ZWPA 3OOOA 3PN9A 5CNXA 1PV9A 5CDVA 4EGEA 2BWSA 1W2MA 4FKCA 3QOCA 1JAWA 5FCFA 3BIQA 1WL9A 4RZZA 1A16A 4QR8A 3I7MA 3L24A 5CDLA 1M35A 3IG4A 4RZYA 2HOWA 5CIKA 2BN7A 4S2TP 2OKNA 3CB6A 3BIPA 1KP0A 5FCHA 1WBQA 1WLRA 1N51A 5CDEA 4PV4A
chains in the Genus database with same CATH superfamily
3CB5A 2BWTA 1W7VA 2BHCA 2BWXA 5E2CA 2BWVA 5E5BA 4S00A 4R60A 2BWYA 3BITA 5CE6A 1WL6A 3OVKA 2BWWA 2BHAA 1WY2A 2BHDA 3L7GA 3PEBA 4ZWOA 1WN1A 2V3YA 2BH3A 4RGZ1 3Q6DA 4S01A 3IL0A 2ZSGA 2V3XA 4S2RP 4ZNGA 2BWUA 3RVAA 3CTZA 2V3ZA 1CHMA 4ZWUA 4B28A 2BHBA 3O5VA 2IW2A 4ZWPA 3OOOA 3PN9A 5CNXA 1PV9A 5CDVA 4EGEA 2BWSA 1W2MA 4FKCA 3QOCA 1JAWA 5FCFA 3BIQA 1WL9A 4RZZA 1A16A 4QR8A 3I7MA 3L24A 5CDLA 1M35A 3IG4A 4RZYA 2HOWA 5CIKA 2BN7A 4S2TP 2OKNA 3CB6A 3BIPA 1KP0A 5FCHA 1WBQA 1WLRA 1N51A 5CDEA 4PV4A
chains in the Genus database with same CATH topology
3CB5A 2BWTA 1W7VA 2BHCA 2BWXA 5E2CA 2BWVA 5E5BA 4S00A 4R60A 2BWYA 3BITA 5CE6A 1WL6A 3OVKA 2BWWA 2BHAA 1WY2A 2BHDA 3L7GA 3PEBA 4ZWOA 1WN1A 2V3YA 2BH3A 4RGZ1 3Q6DA 4S01A 3IL0A 2ZSGA 2V3XA 4S2RP 4ZNGA 2BWUA 3RVAA 3CTZA 2V3ZA 1CHMA 4ZWUA 4B28A 2BHBA 3O5VA 2IW2A 4ZWPA 3OOOA 3PN9A 5CNXA 1PV9A 5CDVA 4EGEA 2BWSA 1W2MA 4FKCA 3QOCA 1JAWA 5FCFA 3BIQA 1WL9A 4RZZA 1A16A 4QR8A 3I7MA 3L24A 5CDLA 1M35A 3IG4A 4RZYA 2HOWA 5CIKA 2BN7A 4S2TP 2OKNA 3CB6A 3BIPA 1KP0A 5FCHA 1WBQA 1WLRA 1N51A 5CDEA 4PV4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CB5 A;  2BWT A;  1W7V A;  2BHC A;  2BWX A;  5E2C A;  2BWV A;  5E5B A;  4S00 A;  4R60 A;  2BWY A;  3BIT A;  5CE6 A;  1WL6 A;  3OVK A;  2BWW A;  2BHA A;  1WY2 A;  2BHD A;  3L7G A;  3PEB A;  4ZWO A;  1WN1 A;  2V3Y A;  2BH3 A;  4RGZ 1;  3Q6D A;  4S01 A;  3IL0 A;  2ZSG A;  2V3X A;  4S2R P;  4ZNG A;  2BWU A;  3RVA A;  3CTZ A;  2V3Z A;  1CHM A;  4ZWU A;  4B28 A;  2BHB A;  3O5V A;  2IW2 A;  4ZWP A;  3OOO A;  3PN9 A;  5CNX A;  1PV9 A;  5CDV A;  4EGE A;  2BWS A;  1W2M A;  4FKC A;  3QOC A;  1JAW A;  5FCF A;  3BIQ A;  1WL9 A;  4RZZ A;  1A16 A;  4QR8 A;  3I7M A;  3L24 A;  5CDL A;  1M35 A;  3IG4 A;  4RZY A;  2HOW A;  5CIK A;  2BN7 A;  4S2T P;  2OKN A;  3CB6 A;  3BIP A;  1KP0 A;  5FCH A;  1WBQ A;  1WLR A;  1N51 A;  5CDE A;  4PV4 A; 
#chains in the Genus database with same CATH topology
 3CB5 A;  2BWT A;  1W7V A;  2BHC A;  2BWX A;  5E2C A;  2BWV A;  5E5B A;  4S00 A;  4R60 A;  2BWY A;  3BIT A;  5CE6 A;  1WL6 A;  3OVK A;  2BWW A;  2BHA A;  1WY2 A;  2BHD A;  3L7G A;  3PEB A;  4ZWO A;  1WN1 A;  2V3Y A;  2BH3 A;  4RGZ 1;  3Q6D A;  4S01 A;  3IL0 A;  2ZSG A;  2V3X A;  4S2R P;  4ZNG A;  2BWU A;  3RVA A;  3CTZ A;  2V3Z A;  1CHM A;  4ZWU A;  4B28 A;  2BHB A;  3O5V A;  2IW2 A;  4ZWP A;  3OOO A;  3PN9 A;  5CNX A;  1PV9 A;  5CDV A;  4EGE A;  2BWS A;  1W2M A;  4FKC A;  3QOC A;  1JAW A;  5FCF A;  3BIQ A;  1WL9 A;  4RZZ A;  1A16 A;  4QR8 A;  3I7M A;  3L24 A;  5CDL A;  1M35 A;  3IG4 A;  4RZY A;  2HOW A;  5CIK A;  2BN7 A;  4S2T P;  2OKN A;  3CB6 A;  3BIP A;  1KP0 A;  5FCH A;  1WBQ A;  1WLR A;  1N51 A;  5CDE A;  4PV4 A; 
#chains in the Genus database with same CATH homology
 3CB5 A;  2BWT A;  1W7V A;  2BHC A;  2BWX A;  5E2C A;  2BWV A;  5E5B A;  4S00 A;  4R60 A;  2BWY A;  3BIT A;  5CE6 A;  1WL6 A;  3OVK A;  2BWW A;  2BHA A;  1WY2 A;  2BHD A;  3L7G A;  3PEB A;  4ZWO A;  1WN1 A;  2V3Y A;  2BH3 A;  4RGZ 1;  3Q6D A;  4S01 A;  3IL0 A;  2ZSG A;  2V3X A;  4S2R P;  4ZNG A;  2BWU A;  3RVA A;  3CTZ A;  2V3Z A;  1CHM A;  4ZWU A;  4B28 A;  2BHB A;  3O5V A;  2IW2 A;  4ZWP A;  3OOO A;  3PN9 A;  5CNX A;  1PV9 A;  5CDV A;  4EGE A;  2BWS A;  1W2M A;  4FKC A;  3QOC A;  1JAW A;  5FCF A;  3BIQ A;  1WL9 A;  4RZZ A;  1A16 A;  4QR8 A;  3I7M A;  3L24 A;  5CDL A;  1M35 A;  3IG4 A;  4RZY A;  2HOW A;  5CIK A;  2BN7 A;  4S2T P;  2OKN A;  3CB6 A;  3BIP A;  1KP0 A;  5FCH A;  1WBQ A;  1WLR A;  1N51 A;  5CDE A;  4PV4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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