3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
molecule tags Hydrolase
molecule keywords Putative metallopeptidase
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
1N51A 2V3XA 3CTZA 4R60A 4PV4A 5E2CA 2HOWA 3QOCA 2V3YA 3IG4A 4QR8A 1KP0A 2BWSA 3Q6DA 4FKCA 4EGEA 2BWXA 3OOOA 2V3ZA 3CB6A 2IW2A 2BHAA 3BITA 4RZYA 1JAWA 1W2MA 4RGZ1 2BHDA 2BWTA 1WN1A 3BIPA 2BH3A 1WL6A 4S01A 4B28A 4ZWPA 3L7GA 4ZWOA 2BN7A 3OVKA 5CIKA 1CHMA 5E5BA 2BWUA 3I7MA 3BIQA 1WL9A 2BWYA 1WLRA 1WBQA 3CB5A 5CNXA 2BHBA 1A16A 5CDVA 2ZSGA 1M35A 2BWVA 4S00A 4RZZA 5FCFA 5CDLA 1W7VA 3O5VA 1PV9A 2BWWA 4ZWUA 4S2RP 3PEBA 3IL0A 3L24A 4S2TP 4ZNGA 3RVAA 5FCHA 2BHCA 5CE6A 1WY2A 2OKNA 3PN9A 5CDEA
chains in the Genus database with same CATH superfamily
1N51A 2V3XA 3CTZA 4R60A 4PV4A 5E2CA 2HOWA 3QOCA 2V3YA 3IG4A 4QR8A 1KP0A 2BWSA 3Q6DA 4FKCA 4EGEA 2BWXA 3OOOA 2V3ZA 3CB6A 2IW2A 2BHAA 3BITA 4RZYA 1JAWA 1W2MA 4RGZ1 2BHDA 2BWTA 1WN1A 3BIPA 2BH3A 1WL6A 4S01A 4B28A 4ZWPA 3L7GA 4ZWOA 2BN7A 3OVKA 5CIKA 1CHMA 5E5BA 2BWUA 3I7MA 3BIQA 1WL9A 2BWYA 1WLRA 1WBQA 3CB5A 5CNXA 2BHBA 1A16A 5CDVA 2ZSGA 1M35A 2BWVA 4S00A 4RZZA 5FCFA 5CDLA 1W7VA 3O5VA 1PV9A 2BWWA 4ZWUA 4S2RP 3PEBA 3IL0A 3L24A 4S2TP 4ZNGA 3RVAA 5FCHA 2BHCA 5CE6A 1WY2A 2OKNA 3PN9A 5CDEA
chains in the Genus database with same CATH topology
1N51A 2V3XA 3CTZA 4R60A 4PV4A 5E2CA 2HOWA 3QOCA 2V3YA 3IG4A 4QR8A 1KP0A 2BWSA 3Q6DA 4FKCA 4EGEA 2BWXA 3OOOA 2V3ZA 3CB6A 2IW2A 2BHAA 3BITA 4RZYA 1JAWA 1W2MA 4RGZ1 2BHDA 2BWTA 1WN1A 3BIPA 2BH3A 1WL6A 4S01A 4B28A 4ZWPA 3L7GA 4ZWOA 2BN7A 3OVKA 5CIKA 1CHMA 5E5BA 2BWUA 3I7MA 3BIQA 1WL9A 2BWYA 1WLRA 1WBQA 3CB5A 5CNXA 2BHBA 1A16A 5CDVA 2ZSGA 1M35A 2BWVA 4S00A 4RZZA 5FCFA 5CDLA 1W7VA 3O5VA 1PV9A 2BWWA 4ZWUA 4S2RP 3PEBA 3IL0A 3L24A 4S2TP 4ZNGA 3RVAA 5FCHA 2BHCA 5CE6A 1WY2A 2OKNA 3PN9A 5CDEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N51 A;  2V3X A;  3CTZ A;  4R60 A;  4PV4 A;  5E2C A;  2HOW A;  3QOC A;  2V3Y A;  3IG4 A;  4QR8 A;  1KP0 A;  2BWS A;  3Q6D A;  4FKC A;  4EGE A;  2BWX A;  3OOO A;  2V3Z A;  3CB6 A;  2IW2 A;  2BHA A;  3BIT A;  4RZY A;  1JAW A;  1W2M A;  4RGZ 1;  2BHD A;  2BWT A;  1WN1 A;  3BIP A;  2BH3 A;  1WL6 A;  4S01 A;  4B28 A;  4ZWP A;  3L7G A;  4ZWO A;  2BN7 A;  3OVK A;  5CIK A;  1CHM A;  5E5B A;  2BWU A;  3I7M A;  3BIQ A;  1WL9 A;  2BWY A;  1WLR A;  1WBQ A;  3CB5 A;  5CNX A;  2BHB A;  1A16 A;  5CDV A;  2ZSG A;  1M35 A;  2BWV A;  4S00 A;  4RZZ A;  5FCF A;  5CDL A;  1W7V A;  3O5V A;  1PV9 A;  2BWW A;  4ZWU A;  4S2R P;  3PEB A;  3IL0 A;  3L24 A;  4S2T P;  4ZNG A;  3RVA A;  5FCH A;  2BHC A;  5CE6 A;  1WY2 A;  2OKN A;  3PN9 A;  5CDE A; 
#chains in the Genus database with same CATH topology
 1N51 A;  2V3X A;  3CTZ A;  4R60 A;  4PV4 A;  5E2C A;  2HOW A;  3QOC A;  2V3Y A;  3IG4 A;  4QR8 A;  1KP0 A;  2BWS A;  3Q6D A;  4FKC A;  4EGE A;  2BWX A;  3OOO A;  2V3Z A;  3CB6 A;  2IW2 A;  2BHA A;  3BIT A;  4RZY A;  1JAW A;  1W2M A;  4RGZ 1;  2BHD A;  2BWT A;  1WN1 A;  3BIP A;  2BH3 A;  1WL6 A;  4S01 A;  4B28 A;  4ZWP A;  3L7G A;  4ZWO A;  2BN7 A;  3OVK A;  5CIK A;  1CHM A;  5E5B A;  2BWU A;  3I7M A;  3BIQ A;  1WL9 A;  2BWY A;  1WLR A;  1WBQ A;  3CB5 A;  5CNX A;  2BHB A;  1A16 A;  5CDV A;  2ZSG A;  1M35 A;  2BWV A;  4S00 A;  4RZZ A;  5FCF A;  5CDL A;  1W7V A;  3O5V A;  1PV9 A;  2BWW A;  4ZWU A;  4S2R P;  3PEB A;  3IL0 A;  3L24 A;  4S2T P;  4ZNG A;  3RVA A;  5FCH A;  2BHC A;  5CE6 A;  1WY2 A;  2OKN A;  3PN9 A;  5CDE A; 
#chains in the Genus database with same CATH homology
 1N51 A;  2V3X A;  3CTZ A;  4R60 A;  4PV4 A;  5E2C A;  2HOW A;  3QOC A;  2V3Y A;  3IG4 A;  4QR8 A;  1KP0 A;  2BWS A;  3Q6D A;  4FKC A;  4EGE A;  2BWX A;  3OOO A;  2V3Z A;  3CB6 A;  2IW2 A;  2BHA A;  3BIT A;  4RZY A;  1JAW A;  1W2M A;  4RGZ 1;  2BHD A;  2BWT A;  1WN1 A;  3BIP A;  2BH3 A;  1WL6 A;  4S01 A;  4B28 A;  4ZWP A;  3L7G A;  4ZWO A;  2BN7 A;  3OVK A;  5CIK A;  1CHM A;  5E5B A;  2BWU A;  3I7M A;  3BIQ A;  1WL9 A;  2BWY A;  1WLR A;  1WBQ A;  3CB5 A;  5CNX A;  2BHB A;  1A16 A;  5CDV A;  2ZSG A;  1M35 A;  2BWV A;  4S00 A;  4RZZ A;  5FCF A;  5CDL A;  1W7V A;  3O5V A;  1PV9 A;  2BWW A;  4ZWU A;  4S2R P;  3PEB A;  3IL0 A;  3L24 A;  4S2T P;  4ZNG A;  3RVA A;  5FCH A;  2BHC A;  5CE6 A;  1WY2 A;  2OKN A;  3PN9 A;  5CDE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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