3QOCA

Crystal structure of n-terminal domain (creatinase/prolidase like domain) of putative metallopeptidase from corynebacterium diphtheriae
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
129
structure length
129
Chain Sequence
APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Corynebacterium diphtheriae
publication title Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae
rcsb
molecule keywords Putative metallopeptidase
total genus 39
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3qocA00
4S01A 3L24A 1WL9A 2BWVA 1A16A 4EGEA 2HOWA 5E2CA 2V3YA 2BWWA 4FKCA 3OVKA 4RZZA 4ZWUA 3BIPA 1WL6A 2V3ZA 3IL0A 2IW2A 3CB5A 2V3XA 1KP0A 5CDEA 5CDVA 4QR8A 2BHCA 3CTZA 1PV9A 2BWYA 2ZSGA 3PEBA 4S2RP 1W2MA 4PV4A 2BHDA 3IG4A 5FCHA 3CB6A 4R60A 3QOCA 3I7MA 4ZWPA 1CHMA 3L7GA 1WLRA 4B28A 2OKNA 3PN9A 5CNXA 2BWXA 1M35A 1WN1A 3BIQA 1WY2A 4S00A 2BHAA 1N51A 2BHBA 5CDLA 5CIKA 2BH3A 4RZYA 1W7VA 3RVAA 2BN7A 4S2TP 2BWUA 1JAWA 2BWTA 4ZNGA 4ZWOA 2BWSA 5E5BA 5CE6A 3O5VA 5FCFA 1WBQA 3BITA 3OOOA 4RGZ1 3Q6DA
chains in the Genus database with same CATH superfamily
4S01A 3L24A 1WL9A 2BWVA 1A16A 4EGEA 2HOWA 5E2CA 2V3YA 2BWWA 4FKCA 3OVKA 4RZZA 4ZWUA 3BIPA 1WL6A 2V3ZA 3IL0A 2IW2A 3CB5A 2V3XA 1KP0A 5CDEA 5CDVA 4QR8A 2BHCA 3CTZA 1PV9A 2BWYA 2ZSGA 3PEBA 4S2RP 1W2MA 4PV4A 2BHDA 3IG4A 5FCHA 3CB6A 4R60A 3QOCA 3I7MA 4ZWPA 1CHMA 3L7GA 1WLRA 4B28A 2OKNA 3PN9A 5CNXA 2BWXA 1M35A 1WN1A 3BIQA 1WY2A 4S00A 2BHAA 1N51A 2BHBA 5CDLA 5CIKA 2BH3A 4RZYA 1W7VA 3RVAA 2BN7A 4S2TP 2BWUA 1JAWA 2BWTA 4ZNGA 4ZWOA 2BWSA 5E5BA 5CE6A 3O5VA 5FCFA 1WBQA 3BITA 3OOOA 4RGZ1 3Q6DA
chains in the Genus database with same CATH topology
4S01A 3L24A 1WL9A 2BWVA 1A16A 4EGEA 2HOWA 5E2CA 2V3YA 2BWWA 4FKCA 3OVKA 4RZZA 4ZWUA 3BIPA 1WL6A 2V3ZA 3IL0A 2IW2A 3CB5A 2V3XA 1KP0A 5CDEA 5CDVA 4QR8A 2BHCA 3CTZA 1PV9A 2BWYA 2ZSGA 3PEBA 4S2RP 1W2MA 4PV4A 2BHDA 3IG4A 5FCHA 3CB6A 4R60A 3QOCA 3I7MA 4ZWPA 1CHMA 3L7GA 1WLRA 4B28A 2OKNA 3PN9A 5CNXA 2BWXA 1M35A 1WN1A 3BIQA 1WY2A 4S00A 2BHAA 1N51A 2BHBA 5CDLA 5CIKA 2BH3A 4RZYA 1W7VA 3RVAA 2BN7A 4S2TP 2BWUA 1JAWA 2BWTA 4ZNGA 4ZWOA 2BWSA 5E5BA 5CE6A 3O5VA 5FCFA 1WBQA 3BITA 3OOOA 4RGZ1 3Q6DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S01 A;  3L24 A;  1WL9 A;  2BWV A;  1A16 A;  4EGE A;  2HOW A;  5E2C A;  2V3Y A;  2BWW A;  4FKC A;  3OVK A;  4RZZ A;  4ZWU A;  3BIP A;  1WL6 A;  2V3Z A;  3IL0 A;  2IW2 A;  3CB5 A;  2V3X A;  1KP0 A;  5CDE A;  5CDV A;  4QR8 A;  2BHC A;  3CTZ A;  1PV9 A;  2BWY A;  2ZSG A;  3PEB A;  4S2R P;  1W2M A;  4PV4 A;  2BHD A;  3IG4 A;  5FCH A;  3CB6 A;  4R60 A;  3QOC A;  3I7M A;  4ZWP A;  1CHM A;  3L7G A;  1WLR A;  4B28 A;  2OKN A;  3PN9 A;  5CNX A;  2BWX A;  1M35 A;  1WN1 A;  3BIQ A;  1WY2 A;  4S00 A;  2BHA A;  1N51 A;  2BHB A;  5CDL A;  5CIK A;  2BH3 A;  4RZY A;  1W7V A;  3RVA A;  2BN7 A;  4S2T P;  2BWU A;  1JAW A;  2BWT A;  4ZNG A;  4ZWO A;  2BWS A;  5E5B A;  5CE6 A;  3O5V A;  5FCF A;  1WBQ A;  3BIT A;  3OOO A;  4RGZ 1;  3Q6D A; 
#chains in the Genus database with same CATH topology
 4S01 A;  3L24 A;  1WL9 A;  2BWV A;  1A16 A;  4EGE A;  2HOW A;  5E2C A;  2V3Y A;  2BWW A;  4FKC A;  3OVK A;  4RZZ A;  4ZWU A;  3BIP A;  1WL6 A;  2V3Z A;  3IL0 A;  2IW2 A;  3CB5 A;  2V3X A;  1KP0 A;  5CDE A;  5CDV A;  4QR8 A;  2BHC A;  3CTZ A;  1PV9 A;  2BWY A;  2ZSG A;  3PEB A;  4S2R P;  1W2M A;  4PV4 A;  2BHD A;  3IG4 A;  5FCH A;  3CB6 A;  4R60 A;  3QOC A;  3I7M A;  4ZWP A;  1CHM A;  3L7G A;  1WLR A;  4B28 A;  2OKN A;  3PN9 A;  5CNX A;  2BWX A;  1M35 A;  1WN1 A;  3BIQ A;  1WY2 A;  4S00 A;  2BHA A;  1N51 A;  2BHB A;  5CDL A;  5CIK A;  2BH3 A;  4RZY A;  1W7V A;  3RVA A;  2BN7 A;  4S2T P;  2BWU A;  1JAW A;  2BWT A;  4ZNG A;  4ZWO A;  2BWS A;  5E5B A;  5CE6 A;  3O5V A;  5FCF A;  1WBQ A;  3BIT A;  3OOO A;  4RGZ 1;  3Q6D A; 
#chains in the Genus database with same CATH homology
 4S01 A;  3L24 A;  1WL9 A;  2BWV A;  1A16 A;  4EGE A;  2HOW A;  5E2C A;  2V3Y A;  2BWW A;  4FKC A;  3OVK A;  4RZZ A;  4ZWU A;  3BIP A;  1WL6 A;  2V3Z A;  3IL0 A;  2IW2 A;  3CB5 A;  2V3X A;  1KP0 A;  5CDE A;  5CDV A;  4QR8 A;  2BHC A;  3CTZ A;  1PV9 A;  2BWY A;  2ZSG A;  3PEB A;  4S2R P;  1W2M A;  4PV4 A;  2BHD A;  3IG4 A;  5FCH A;  3CB6 A;  4R60 A;  3QOC A;  3I7M A;  4ZWP A;  1CHM A;  3L7G A;  1WLR A;  4B28 A;  2OKN A;  3PN9 A;  5CNX A;  2BWX A;  1M35 A;  1WN1 A;  3BIQ A;  1WY2 A;  4S00 A;  2BHA A;  1N51 A;  2BHB A;  5CDL A;  5CIK A;  2BH3 A;  4RZY A;  1W7V A;  3RVA A;  2BN7 A;  4S2T P;  2BWU A;  1JAW A;  2BWT A;  4ZNG A;  4ZWO A;  2BWS A;  5E5B A;  5CE6 A;  3O5V A;  5FCF A;  1WBQ A;  3BIT A;  3OOO A;  4RGZ 1;  3Q6D A; 
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similar chains in the pdb database (?% sequence similarity)

 
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