3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
4QR8A 3OVKA 1JAWA 2ZSGA 4S01A 4EGEA 2BWWA 1WL9A 5CDEA 5CE6A 2BN7A 3IG4A 5FCFA 2BH3A 3Q6DA 3BIPA 1WBQA 3QOCA 3L24A 3I7MA 2BWVA 1CHMA 1KP0A 4ZNGA 2BHAA 5E2CA 4ZWPA 4RGZ1 4RZZA 1M35A 3BIQA 1N51A 1W2MA 2BWTA 2V3ZA 2BWYA 2BHDA 2HOWA 3PN9A 2BWSA 2V3YA 5CDLA 3OOOA 5CIKA 5E5BA 1A16A 4FKCA 4S2TP 5CNXA 2BHBA 3IL0A 4PV4A 4B28A 2IW2A 4ZWOA 3BITA 4S2RP 4R60A 2BHCA 4RZYA 1WLRA 2OKNA 4ZWUA 1PV9A 1WN1A 3RVAA 2BWUA 5FCHA 3CB5A 3CB6A 3CTZA 4S00A 1W7VA 1WL6A 2V3XA 3L7GA 3O5VA 1WY2A 5CDVA 3PEBA 2BWXA
chains in the Genus database with same CATH superfamily
4QR8A 3OVKA 1JAWA 2ZSGA 4S01A 4EGEA 2BWWA 1WL9A 5CDEA 5CE6A 2BN7A 3IG4A 5FCFA 2BH3A 3Q6DA 3BIPA 1WBQA 3QOCA 3L24A 3I7MA 2BWVA 1CHMA 1KP0A 4ZNGA 2BHAA 5E2CA 4ZWPA 4RGZ1 4RZZA 1M35A 3BIQA 1N51A 1W2MA 2BWTA 2V3ZA 2BWYA 2BHDA 2HOWA 3PN9A 2BWSA 2V3YA 5CDLA 3OOOA 5CIKA 5E5BA 1A16A 4FKCA 4S2TP 5CNXA 2BHBA 3IL0A 4PV4A 4B28A 2IW2A 4ZWOA 3BITA 4S2RP 4R60A 2BHCA 4RZYA 1WLRA 2OKNA 4ZWUA 1PV9A 1WN1A 3RVAA 2BWUA 5FCHA 3CB5A 3CB6A 3CTZA 4S00A 1W7VA 1WL6A 2V3XA 3L7GA 3O5VA 1WY2A 5CDVA 3PEBA 2BWXA
chains in the Genus database with same CATH topology
4QR8A 3OVKA 1JAWA 2ZSGA 4S01A 4EGEA 2BWWA 1WL9A 5CDEA 5CE6A 2BN7A 3IG4A 5FCFA 2BH3A 3Q6DA 3BIPA 1WBQA 3QOCA 3L24A 3I7MA 2BWVA 1CHMA 1KP0A 4ZNGA 2BHAA 5E2CA 4ZWPA 4RGZ1 4RZZA 1M35A 3BIQA 1N51A 1W2MA 2BWTA 2V3ZA 2BWYA 2BHDA 2HOWA 3PN9A 2BWSA 2V3YA 5CDLA 3OOOA 5CIKA 5E5BA 1A16A 4FKCA 4S2TP 5CNXA 2BHBA 3IL0A 4PV4A 4B28A 2IW2A 4ZWOA 3BITA 4S2RP 4R60A 2BHCA 4RZYA 1WLRA 2OKNA 4ZWUA 1PV9A 1WN1A 3RVAA 2BWUA 5FCHA 3CB5A 3CB6A 3CTZA 4S00A 1W7VA 1WL6A 2V3XA 3L7GA 3O5VA 1WY2A 5CDVA 3PEBA 2BWXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QR8 A;  3OVK A;  1JAW A;  2ZSG A;  4S01 A;  4EGE A;  2BWW A;  1WL9 A;  5CDE A;  5CE6 A;  2BN7 A;  3IG4 A;  5FCF A;  2BH3 A;  3Q6D A;  3BIP A;  1WBQ A;  3QOC A;  3L24 A;  3I7M A;  2BWV A;  1CHM A;  1KP0 A;  4ZNG A;  2BHA A;  5E2C A;  4ZWP A;  4RGZ 1;  4RZZ A;  1M35 A;  3BIQ A;  1N51 A;  1W2M A;  2BWT A;  2V3Z A;  2BWY A;  2BHD A;  2HOW A;  3PN9 A;  2BWS A;  2V3Y A;  5CDL A;  3OOO A;  5CIK A;  5E5B A;  1A16 A;  4FKC A;  4S2T P;  5CNX A;  2BHB A;  3IL0 A;  4PV4 A;  4B28 A;  2IW2 A;  4ZWO A;  3BIT A;  4S2R P;  4R60 A;  2BHC A;  4RZY A;  1WLR A;  2OKN A;  4ZWU A;  1PV9 A;  1WN1 A;  3RVA A;  2BWU A;  5FCH A;  3CB5 A;  3CB6 A;  3CTZ A;  4S00 A;  1W7V A;  1WL6 A;  2V3X A;  3L7G A;  3O5V A;  1WY2 A;  5CDV A;  3PEB A;  2BWX A; 
#chains in the Genus database with same CATH topology
 4QR8 A;  3OVK A;  1JAW A;  2ZSG A;  4S01 A;  4EGE A;  2BWW A;  1WL9 A;  5CDE A;  5CE6 A;  2BN7 A;  3IG4 A;  5FCF A;  2BH3 A;  3Q6D A;  3BIP A;  1WBQ A;  3QOC A;  3L24 A;  3I7M A;  2BWV A;  1CHM A;  1KP0 A;  4ZNG A;  2BHA A;  5E2C A;  4ZWP A;  4RGZ 1;  4RZZ A;  1M35 A;  3BIQ A;  1N51 A;  1W2M A;  2BWT A;  2V3Z A;  2BWY A;  2BHD A;  2HOW A;  3PN9 A;  2BWS A;  2V3Y A;  5CDL A;  3OOO A;  5CIK A;  5E5B A;  1A16 A;  4FKC A;  4S2T P;  5CNX A;  2BHB A;  3IL0 A;  4PV4 A;  4B28 A;  2IW2 A;  4ZWO A;  3BIT A;  4S2R P;  4R60 A;  2BHC A;  4RZY A;  1WLR A;  2OKN A;  4ZWU A;  1PV9 A;  1WN1 A;  3RVA A;  2BWU A;  5FCH A;  3CB5 A;  3CB6 A;  3CTZ A;  4S00 A;  1W7V A;  1WL6 A;  2V3X A;  3L7G A;  3O5V A;  1WY2 A;  5CDV A;  3PEB A;  2BWX A; 
#chains in the Genus database with same CATH homology
 4QR8 A;  3OVK A;  1JAW A;  2ZSG A;  4S01 A;  4EGE A;  2BWW A;  1WL9 A;  5CDE A;  5CE6 A;  2BN7 A;  3IG4 A;  5FCF A;  2BH3 A;  3Q6D A;  3BIP A;  1WBQ A;  3QOC A;  3L24 A;  3I7M A;  2BWV A;  1CHM A;  1KP0 A;  4ZNG A;  2BHA A;  5E2C A;  4ZWP A;  4RGZ 1;  4RZZ A;  1M35 A;  3BIQ A;  1N51 A;  1W2M A;  2BWT A;  2V3Z A;  2BWY A;  2BHD A;  2HOW A;  3PN9 A;  2BWS A;  2V3Y A;  5CDL A;  3OOO A;  5CIK A;  5E5B A;  1A16 A;  4FKC A;  4S2T P;  5CNX A;  2BHB A;  3IL0 A;  4PV4 A;  4B28 A;  2IW2 A;  4ZWO A;  3BIT A;  4S2R P;  4R60 A;  2BHC A;  4RZY A;  1WLR A;  2OKN A;  4ZWU A;  1PV9 A;  1WN1 A;  3RVA A;  2BWU A;  5FCH A;  3CB5 A;  3CB6 A;  3CTZ A;  4S00 A;  1W7V A;  1WL6 A;  2V3X A;  3L7G A;  3O5V A;  1WY2 A;  5CDV A;  3PEB A;  2BWX A; 
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