3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
molecule tags Hydrolase
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
2BHAA 3BIPA 3Q6DA 3CTZA 4EGEA 2HOWA 3IG4A 1M35A 2BWVA 1A16A 3BITA 1WN1A 5CIKA 3BIQA 2BWSA 3RVAA 1WBQA 4S2TP 1KP0A 1WL9A 3PN9A 5FCFA 5E2CA 4ZWUA 3L24A 5CDEA 2BWYA 4S2RP 4RZYA 4ZNGA 3PEBA 4ZWPA 2BHDA 5CE6A 2BN7A 4PV4A 5FCHA 4S00A 5CNXA 2V3YA 4RZZA 1W2MA 4RGZ1 1JAWA 3QOCA 5CDVA 4R60A 1WLRA 2BHCA 5CDLA 2BWXA 2OKNA 2V3XA 2BHBA 3OOOA 4S01A 3CB5A 2IW2A 2ZSGA 4B28A 1WY2A 1W7VA 3CB6A 1CHMA 2V3ZA 3IL0A 5E5BA 3L7GA 4QR8A 2BWUA 2BWWA 3O5VA 1PV9A 1N51A 1WL6A 4ZWOA 3I7MA 2BWTA 4FKCA 2BH3A 3OVKA
chains in the Genus database with same CATH superfamily
2BHAA 3BIPA 3Q6DA 3CTZA 4EGEA 2HOWA 3IG4A 1M35A 2BWVA 1A16A 3BITA 1WN1A 5CIKA 3BIQA 2BWSA 3RVAA 1WBQA 4S2TP 1KP0A 1WL9A 3PN9A 5FCFA 5E2CA 4ZWUA 3L24A 5CDEA 2BWYA 4S2RP 4RZYA 4ZNGA 3PEBA 4ZWPA 2BHDA 5CE6A 2BN7A 4PV4A 5FCHA 4S00A 5CNXA 2V3YA 4RZZA 1W2MA 4RGZ1 1JAWA 3QOCA 5CDVA 4R60A 1WLRA 2BHCA 5CDLA 2BWXA 2OKNA 2V3XA 2BHBA 3OOOA 4S01A 3CB5A 2IW2A 2ZSGA 4B28A 1WY2A 1W7VA 3CB6A 1CHMA 2V3ZA 3IL0A 5E5BA 3L7GA 4QR8A 2BWUA 2BWWA 3O5VA 1PV9A 1N51A 1WL6A 4ZWOA 3I7MA 2BWTA 4FKCA 2BH3A 3OVKA
chains in the Genus database with same CATH topology
2BHAA 3BIPA 3Q6DA 3CTZA 4EGEA 2HOWA 3IG4A 1M35A 2BWVA 1A16A 3BITA 1WN1A 5CIKA 3BIQA 2BWSA 3RVAA 1WBQA 4S2TP 1KP0A 1WL9A 3PN9A 5FCFA 5E2CA 4ZWUA 3L24A 5CDEA 2BWYA 4S2RP 4RZYA 4ZNGA 3PEBA 4ZWPA 2BHDA 5CE6A 2BN7A 4PV4A 5FCHA 4S00A 5CNXA 2V3YA 4RZZA 1W2MA 4RGZ1 1JAWA 3QOCA 5CDVA 4R60A 1WLRA 2BHCA 5CDLA 2BWXA 2OKNA 2V3XA 2BHBA 3OOOA 4S01A 3CB5A 2IW2A 2ZSGA 4B28A 1WY2A 1W7VA 3CB6A 1CHMA 2V3ZA 3IL0A 5E5BA 3L7GA 4QR8A 2BWUA 2BWWA 3O5VA 1PV9A 1N51A 1WL6A 4ZWOA 3I7MA 2BWTA 4FKCA 2BH3A 3OVKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BHA A;  3BIP A;  3Q6D A;  3CTZ A;  4EGE A;  2HOW A;  3IG4 A;  1M35 A;  2BWV A;  1A16 A;  3BIT A;  1WN1 A;  5CIK A;  3BIQ A;  2BWS A;  3RVA A;  1WBQ A;  4S2T P;  1KP0 A;  1WL9 A;  3PN9 A;  5FCF A;  5E2C A;  4ZWU A;  3L24 A;  5CDE A;  2BWY A;  4S2R P;  4RZY A;  4ZNG A;  3PEB A;  4ZWP A;  2BHD A;  5CE6 A;  2BN7 A;  4PV4 A;  5FCH A;  4S00 A;  5CNX A;  2V3Y A;  4RZZ A;  1W2M A;  4RGZ 1;  1JAW A;  3QOC A;  5CDV A;  4R60 A;  1WLR A;  2BHC A;  5CDL A;  2BWX A;  2OKN A;  2V3X A;  2BHB A;  3OOO A;  4S01 A;  3CB5 A;  2IW2 A;  2ZSG A;  4B28 A;  1WY2 A;  1W7V A;  3CB6 A;  1CHM A;  2V3Z A;  3IL0 A;  5E5B A;  3L7G A;  4QR8 A;  2BWU A;  2BWW A;  3O5V A;  1PV9 A;  1N51 A;  1WL6 A;  4ZWO A;  3I7M A;  2BWT A;  4FKC A;  2BH3 A;  3OVK A; 
#chains in the Genus database with same CATH topology
 2BHA A;  3BIP A;  3Q6D A;  3CTZ A;  4EGE A;  2HOW A;  3IG4 A;  1M35 A;  2BWV A;  1A16 A;  3BIT A;  1WN1 A;  5CIK A;  3BIQ A;  2BWS A;  3RVA A;  1WBQ A;  4S2T P;  1KP0 A;  1WL9 A;  3PN9 A;  5FCF A;  5E2C A;  4ZWU A;  3L24 A;  5CDE A;  2BWY A;  4S2R P;  4RZY A;  4ZNG A;  3PEB A;  4ZWP A;  2BHD A;  5CE6 A;  2BN7 A;  4PV4 A;  5FCH A;  4S00 A;  5CNX A;  2V3Y A;  4RZZ A;  1W2M A;  4RGZ 1;  1JAW A;  3QOC A;  5CDV A;  4R60 A;  1WLR A;  2BHC A;  5CDL A;  2BWX A;  2OKN A;  2V3X A;  2BHB A;  3OOO A;  4S01 A;  3CB5 A;  2IW2 A;  2ZSG A;  4B28 A;  1WY2 A;  1W7V A;  3CB6 A;  1CHM A;  2V3Z A;  3IL0 A;  5E5B A;  3L7G A;  4QR8 A;  2BWU A;  2BWW A;  3O5V A;  1PV9 A;  1N51 A;  1WL6 A;  4ZWO A;  3I7M A;  2BWT A;  4FKC A;  2BH3 A;  3OVK A; 
#chains in the Genus database with same CATH homology
 2BHA A;  3BIP A;  3Q6D A;  3CTZ A;  4EGE A;  2HOW A;  3IG4 A;  1M35 A;  2BWV A;  1A16 A;  3BIT A;  1WN1 A;  5CIK A;  3BIQ A;  2BWS A;  3RVA A;  1WBQ A;  4S2T P;  1KP0 A;  1WL9 A;  3PN9 A;  5FCF A;  5E2C A;  4ZWU A;  3L24 A;  5CDE A;  2BWY A;  4S2R P;  4RZY A;  4ZNG A;  3PEB A;  4ZWP A;  2BHD A;  5CE6 A;  2BN7 A;  4PV4 A;  5FCH A;  4S00 A;  5CNX A;  2V3Y A;  4RZZ A;  1W2M A;  4RGZ 1;  1JAW A;  3QOC A;  5CDV A;  4R60 A;  1WLR A;  2BHC A;  5CDL A;  2BWX A;  2OKN A;  2V3X A;  2BHB A;  3OOO A;  4S01 A;  3CB5 A;  2IW2 A;  2ZSG A;  4B28 A;  1WY2 A;  1W7V A;  3CB6 A;  1CHM A;  2V3Z A;  3IL0 A;  5E5B A;  3L7G A;  4QR8 A;  2BWU A;  2BWW A;  3O5V A;  1PV9 A;  1N51 A;  1WL6 A;  4ZWO A;  3I7M A;  2BWT A;  4FKC A;  2BH3 A;  3OVK A; 
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