3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
2BH3A 1WY2A 3IL0A 1A16A 1WN1A 3O5VA 2BWVA 4RZYA 1M35A 5CDEA 4EGEA 2HOWA 3PEBA 4RGZ1 5CDVA 2BHCA 1WL6A 4PV4A 5CNXA 5CDLA 1WL9A 1PV9A 1N51A 4RZZA 3CB6A 2BHAA 2BWWA 3Q6DA 4ZWPA 3BIPA 4ZWUA 3RVAA 4FKCA 3PN9A 3BIQA 5CE6A 4R60A 2BWXA 2BN7A 2V3XA 4ZWOA 2IW2A 2V3ZA 1W7VA 3L24A 3OVKA 4S01A 2ZSGA 3BITA 3QOCA 4B28A 2BWTA 4ZNGA 5FCFA 3CB5A 2BWSA 1WLRA 2BWYA 3CTZA 5E5BA 1W2MA 2OKNA 2BHDA 2V3YA 5FCHA 1WBQA 5CIKA 2BWUA 1CHMA 4S2RP 4QR8A 3I7MA 2BHBA 3IG4A 1JAWA 3L7GA 1KP0A 3OOOA 4S00A 4S2TP 5E2CA
chains in the Genus database with same CATH superfamily
2BH3A 1WY2A 3IL0A 1A16A 1WN1A 3O5VA 2BWVA 4RZYA 1M35A 5CDEA 4EGEA 2HOWA 3PEBA 4RGZ1 5CDVA 2BHCA 1WL6A 4PV4A 5CNXA 5CDLA 1WL9A 1PV9A 1N51A 4RZZA 3CB6A 2BHAA 2BWWA 3Q6DA 4ZWPA 3BIPA 4ZWUA 3RVAA 4FKCA 3PN9A 3BIQA 5CE6A 4R60A 2BWXA 2BN7A 2V3XA 4ZWOA 2IW2A 2V3ZA 1W7VA 3L24A 3OVKA 4S01A 2ZSGA 3BITA 3QOCA 4B28A 2BWTA 4ZNGA 5FCFA 3CB5A 2BWSA 1WLRA 2BWYA 3CTZA 5E5BA 1W2MA 2OKNA 2BHDA 2V3YA 5FCHA 1WBQA 5CIKA 2BWUA 1CHMA 4S2RP 4QR8A 3I7MA 2BHBA 3IG4A 1JAWA 3L7GA 1KP0A 3OOOA 4S00A 4S2TP 5E2CA
chains in the Genus database with same CATH topology
2BH3A 1WY2A 3IL0A 1A16A 1WN1A 3O5VA 2BWVA 4RZYA 1M35A 5CDEA 4EGEA 2HOWA 3PEBA 4RGZ1 5CDVA 2BHCA 1WL6A 4PV4A 5CNXA 5CDLA 1WL9A 1PV9A 1N51A 4RZZA 3CB6A 2BHAA 2BWWA 3Q6DA 4ZWPA 3BIPA 4ZWUA 3RVAA 4FKCA 3PN9A 3BIQA 5CE6A 4R60A 2BWXA 2BN7A 2V3XA 4ZWOA 2IW2A 2V3ZA 1W7VA 3L24A 3OVKA 4S01A 2ZSGA 3BITA 3QOCA 4B28A 2BWTA 4ZNGA 5FCFA 3CB5A 2BWSA 1WLRA 2BWYA 3CTZA 5E5BA 1W2MA 2OKNA 2BHDA 2V3YA 5FCHA 1WBQA 5CIKA 2BWUA 1CHMA 4S2RP 4QR8A 3I7MA 2BHBA 3IG4A 1JAWA 3L7GA 1KP0A 3OOOA 4S00A 4S2TP 5E2CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BH3 A;  1WY2 A;  3IL0 A;  1A16 A;  1WN1 A;  3O5V A;  2BWV A;  4RZY A;  1M35 A;  5CDE A;  4EGE A;  2HOW A;  3PEB A;  4RGZ 1;  5CDV A;  2BHC A;  1WL6 A;  4PV4 A;  5CNX A;  5CDL A;  1WL9 A;  1PV9 A;  1N51 A;  4RZZ A;  3CB6 A;  2BHA A;  2BWW A;  3Q6D A;  4ZWP A;  3BIP A;  4ZWU A;  3RVA A;  4FKC A;  3PN9 A;  3BIQ A;  5CE6 A;  4R60 A;  2BWX A;  2BN7 A;  2V3X A;  4ZWO A;  2IW2 A;  2V3Z A;  1W7V A;  3L24 A;  3OVK A;  4S01 A;  2ZSG A;  3BIT A;  3QOC A;  4B28 A;  2BWT A;  4ZNG A;  5FCF A;  3CB5 A;  2BWS A;  1WLR A;  2BWY A;  3CTZ A;  5E5B A;  1W2M A;  2OKN A;  2BHD A;  2V3Y A;  5FCH A;  1WBQ A;  5CIK A;  2BWU A;  1CHM A;  4S2R P;  4QR8 A;  3I7M A;  2BHB A;  3IG4 A;  1JAW A;  3L7G A;  1KP0 A;  3OOO A;  4S00 A;  4S2T P;  5E2C A; 
#chains in the Genus database with same CATH topology
 2BH3 A;  1WY2 A;  3IL0 A;  1A16 A;  1WN1 A;  3O5V A;  2BWV A;  4RZY A;  1M35 A;  5CDE A;  4EGE A;  2HOW A;  3PEB A;  4RGZ 1;  5CDV A;  2BHC A;  1WL6 A;  4PV4 A;  5CNX A;  5CDL A;  1WL9 A;  1PV9 A;  1N51 A;  4RZZ A;  3CB6 A;  2BHA A;  2BWW A;  3Q6D A;  4ZWP A;  3BIP A;  4ZWU A;  3RVA A;  4FKC A;  3PN9 A;  3BIQ A;  5CE6 A;  4R60 A;  2BWX A;  2BN7 A;  2V3X A;  4ZWO A;  2IW2 A;  2V3Z A;  1W7V A;  3L24 A;  3OVK A;  4S01 A;  2ZSG A;  3BIT A;  3QOC A;  4B28 A;  2BWT A;  4ZNG A;  5FCF A;  3CB5 A;  2BWS A;  1WLR A;  2BWY A;  3CTZ A;  5E5B A;  1W2M A;  2OKN A;  2BHD A;  2V3Y A;  5FCH A;  1WBQ A;  5CIK A;  2BWU A;  1CHM A;  4S2R P;  4QR8 A;  3I7M A;  2BHB A;  3IG4 A;  1JAW A;  3L7G A;  1KP0 A;  3OOO A;  4S00 A;  4S2T P;  5E2C A; 
#chains in the Genus database with same CATH homology
 2BH3 A;  1WY2 A;  3IL0 A;  1A16 A;  1WN1 A;  3O5V A;  2BWV A;  4RZY A;  1M35 A;  5CDE A;  4EGE A;  2HOW A;  3PEB A;  4RGZ 1;  5CDV A;  2BHC A;  1WL6 A;  4PV4 A;  5CNX A;  5CDL A;  1WL9 A;  1PV9 A;  1N51 A;  4RZZ A;  3CB6 A;  2BHA A;  2BWW A;  3Q6D A;  4ZWP A;  3BIP A;  4ZWU A;  3RVA A;  4FKC A;  3PN9 A;  3BIQ A;  5CE6 A;  4R60 A;  2BWX A;  2BN7 A;  2V3X A;  4ZWO A;  2IW2 A;  2V3Z A;  1W7V A;  3L24 A;  3OVK A;  4S01 A;  2ZSG A;  3BIT A;  3QOC A;  4B28 A;  2BWT A;  4ZNG A;  5FCF A;  3CB5 A;  2BWS A;  1WLR A;  2BWY A;  3CTZ A;  5E5B A;  1W2M A;  2OKN A;  2BHD A;  2V3Y A;  5FCH A;  1WBQ A;  5CIK A;  2BWU A;  1CHM A;  4S2R P;  4QR8 A;  3I7M A;  2BHB A;  3IG4 A;  1JAW A;  3L7G A;  1KP0 A;  3OOO A;  4S00 A;  4S2T P;  5E2C A; 
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