3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
molecule tags Hydrolase
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
1CHMA 3I7MA 3IL0A 4S00A 2ZSGA 1W7VA 2BN7A 4R60A 1JAWA 5CIKA 3CB6A 5CDVA 3RVAA 4S2RP 4S01A 1WY2A 1PV9A 3IG4A 2BWXA 5CNXA 4EGEA 1WBQA 5CDLA 4ZWPA 2V3YA 3OVKA 4FKCA 1WLRA 5CDEA 5FCHA 1A16A 4ZNGA 1WL9A 4RZYA 1WN1A 4RGZ1 5FCFA 2BHAA 2BHBA 5E5BA 1N51A 3OOOA 3BIPA 4RZZA 2OKNA 2BHDA 1KP0A 2BWVA 4QR8A 3PEBA 3BITA 5E2CA 2HOWA 3L24A 3O5VA 4ZWOA 1WL6A 2BWTA 3PN9A 2BHCA 4PV4A 2V3XA 4ZWUA 3QOCA 2IW2A 2BWUA 3CB5A 2V3ZA 3L7GA 4S2TP 2BH3A 3CTZA 2BWYA 1W2MA 1M35A 4B28A 2BWWA 5CE6A 2BWSA 3BIQA 3Q6DA
chains in the Genus database with same CATH superfamily
1CHMA 3I7MA 3IL0A 4S00A 2ZSGA 1W7VA 2BN7A 4R60A 1JAWA 5CIKA 3CB6A 5CDVA 3RVAA 4S2RP 4S01A 1WY2A 1PV9A 3IG4A 2BWXA 5CNXA 4EGEA 1WBQA 5CDLA 4ZWPA 2V3YA 3OVKA 4FKCA 1WLRA 5CDEA 5FCHA 1A16A 4ZNGA 1WL9A 4RZYA 1WN1A 4RGZ1 5FCFA 2BHAA 2BHBA 5E5BA 1N51A 3OOOA 3BIPA 4RZZA 2OKNA 2BHDA 1KP0A 2BWVA 4QR8A 3PEBA 3BITA 5E2CA 2HOWA 3L24A 3O5VA 4ZWOA 1WL6A 2BWTA 3PN9A 2BHCA 4PV4A 2V3XA 4ZWUA 3QOCA 2IW2A 2BWUA 3CB5A 2V3ZA 3L7GA 4S2TP 2BH3A 3CTZA 2BWYA 1W2MA 1M35A 4B28A 2BWWA 5CE6A 2BWSA 3BIQA 3Q6DA
chains in the Genus database with same CATH topology
1CHMA 3I7MA 3IL0A 4S00A 2ZSGA 1W7VA 2BN7A 4R60A 1JAWA 5CIKA 3CB6A 5CDVA 3RVAA 4S2RP 4S01A 1WY2A 1PV9A 3IG4A 2BWXA 5CNXA 4EGEA 1WBQA 5CDLA 4ZWPA 2V3YA 3OVKA 4FKCA 1WLRA 5CDEA 5FCHA 1A16A 4ZNGA 1WL9A 4RZYA 1WN1A 4RGZ1 5FCFA 2BHAA 2BHBA 5E5BA 1N51A 3OOOA 3BIPA 4RZZA 2OKNA 2BHDA 1KP0A 2BWVA 4QR8A 3PEBA 3BITA 5E2CA 2HOWA 3L24A 3O5VA 4ZWOA 1WL6A 2BWTA 3PN9A 2BHCA 4PV4A 2V3XA 4ZWUA 3QOCA 2IW2A 2BWUA 3CB5A 2V3ZA 3L7GA 4S2TP 2BH3A 3CTZA 2BWYA 1W2MA 1M35A 4B28A 2BWWA 5CE6A 2BWSA 3BIQA 3Q6DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CHM A;  3I7M A;  3IL0 A;  4S00 A;  2ZSG A;  1W7V A;  2BN7 A;  4R60 A;  1JAW A;  5CIK A;  3CB6 A;  5CDV A;  3RVA A;  4S2R P;  4S01 A;  1WY2 A;  1PV9 A;  3IG4 A;  2BWX A;  5CNX A;  4EGE A;  1WBQ A;  5CDL A;  4ZWP A;  2V3Y A;  3OVK A;  4FKC A;  1WLR A;  5CDE A;  5FCH A;  1A16 A;  4ZNG A;  1WL9 A;  4RZY A;  1WN1 A;  4RGZ 1;  5FCF A;  2BHA A;  2BHB A;  5E5B A;  1N51 A;  3OOO A;  3BIP A;  4RZZ A;  2OKN A;  2BHD A;  1KP0 A;  2BWV A;  4QR8 A;  3PEB A;  3BIT A;  5E2C A;  2HOW A;  3L24 A;  3O5V A;  4ZWO A;  1WL6 A;  2BWT A;  3PN9 A;  2BHC A;  4PV4 A;  2V3X A;  4ZWU A;  3QOC A;  2IW2 A;  2BWU A;  3CB5 A;  2V3Z A;  3L7G A;  4S2T P;  2BH3 A;  3CTZ A;  2BWY A;  1W2M A;  1M35 A;  4B28 A;  2BWW A;  5CE6 A;  2BWS A;  3BIQ A;  3Q6D A; 
#chains in the Genus database with same CATH topology
 1CHM A;  3I7M A;  3IL0 A;  4S00 A;  2ZSG A;  1W7V A;  2BN7 A;  4R60 A;  1JAW A;  5CIK A;  3CB6 A;  5CDV A;  3RVA A;  4S2R P;  4S01 A;  1WY2 A;  1PV9 A;  3IG4 A;  2BWX A;  5CNX A;  4EGE A;  1WBQ A;  5CDL A;  4ZWP A;  2V3Y A;  3OVK A;  4FKC A;  1WLR A;  5CDE A;  5FCH A;  1A16 A;  4ZNG A;  1WL9 A;  4RZY A;  1WN1 A;  4RGZ 1;  5FCF A;  2BHA A;  2BHB A;  5E5B A;  1N51 A;  3OOO A;  3BIP A;  4RZZ A;  2OKN A;  2BHD A;  1KP0 A;  2BWV A;  4QR8 A;  3PEB A;  3BIT A;  5E2C A;  2HOW A;  3L24 A;  3O5V A;  4ZWO A;  1WL6 A;  2BWT A;  3PN9 A;  2BHC A;  4PV4 A;  2V3X A;  4ZWU A;  3QOC A;  2IW2 A;  2BWU A;  3CB5 A;  2V3Z A;  3L7G A;  4S2T P;  2BH3 A;  3CTZ A;  2BWY A;  1W2M A;  1M35 A;  4B28 A;  2BWW A;  5CE6 A;  2BWS A;  3BIQ A;  3Q6D A; 
#chains in the Genus database with same CATH homology
 1CHM A;  3I7M A;  3IL0 A;  4S00 A;  2ZSG A;  1W7V A;  2BN7 A;  4R60 A;  1JAW A;  5CIK A;  3CB6 A;  5CDV A;  3RVA A;  4S2R P;  4S01 A;  1WY2 A;  1PV9 A;  3IG4 A;  2BWX A;  5CNX A;  4EGE A;  1WBQ A;  5CDL A;  4ZWP A;  2V3Y A;  3OVK A;  4FKC A;  1WLR A;  5CDE A;  5FCH A;  1A16 A;  4ZNG A;  1WL9 A;  4RZY A;  1WN1 A;  4RGZ 1;  5FCF A;  2BHA A;  2BHB A;  5E5B A;  1N51 A;  3OOO A;  3BIP A;  4RZZ A;  2OKN A;  2BHD A;  1KP0 A;  2BWV A;  4QR8 A;  3PEB A;  3BIT A;  5E2C A;  2HOW A;  3L24 A;  3O5V A;  4ZWO A;  1WL6 A;  2BWT A;  3PN9 A;  2BHC A;  4PV4 A;  2V3X A;  4ZWU A;  3QOC A;  2IW2 A;  2BWU A;  3CB5 A;  2V3Z A;  3L7G A;  4S2T P;  2BH3 A;  3CTZ A;  2BWY A;  1W2M A;  1M35 A;  4B28 A;  2BWW A;  5CE6 A;  2BWS A;  3BIQ A;  3Q6D A; 
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