3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
b'SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
molecule tags Hydrolase
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
2OKNA 2ZSGA 2BHAA 1WY2A 4QR8A 1WL6A 4S2RP 4FKCA 2IW2A 4ZWPA 3CB6A 1W7VA 2BWWA 5CIKA 2BWXA 2BH3A 2BN7A 2BWYA 3OOOA 2BWSA 3BIPA 3L24A 4ZWOA 1WL9A 4R60A 3PEBA 3BIQA 5CE6A 5E2CA 5FCHA 2BHBA 4B28A 4S01A 3Q6DA 4ZNGA 4S2TP 1WLRA 3QOCA 4RGZ1 1W2MA 3CB5A 4EGEA 1KP0A 4RZYA 2BWTA 1M35A 3CTZA 5FCFA 2V3XA 5CDEA 3L7GA 4PV4A 5E5BA 4S00A 1WN1A 1PV9A 3OVKA 4RZZA 5CNXA 3IL0A 2V3YA 1N51A 2V3ZA 3PN9A 2BHCA 1JAWA 2BHDA 1A16A 3IG4A 5CDLA 3BITA 1CHMA 5CDVA 3I7MA 2HOWA 2BWUA 3O5VA 3RVAA 1WBQA 2BWVA 4ZWUA
chains in the Genus database with same CATH superfamily
2OKNA 2ZSGA 2BHAA 1WY2A 4QR8A 1WL6A 4S2RP 4FKCA 2IW2A 4ZWPA 3CB6A 1W7VA 2BWWA 5CIKA 2BWXA 2BH3A 2BN7A 2BWYA 3OOOA 2BWSA 3BIPA 3L24A 4ZWOA 1WL9A 4R60A 3PEBA 3BIQA 5CE6A 5E2CA 5FCHA 2BHBA 4B28A 4S01A 3Q6DA 4ZNGA 4S2TP 1WLRA 3QOCA 4RGZ1 1W2MA 3CB5A 4EGEA 1KP0A 4RZYA 2BWTA 1M35A 3CTZA 5FCFA 2V3XA 5CDEA 3L7GA 4PV4A 5E5BA 4S00A 1WN1A 1PV9A 3OVKA 4RZZA 5CNXA 3IL0A 2V3YA 1N51A 2V3ZA 3PN9A 2BHCA 1JAWA 2BHDA 1A16A 3IG4A 5CDLA 3BITA 1CHMA 5CDVA 3I7MA 2HOWA 2BWUA 3O5VA 3RVAA 1WBQA 2BWVA 4ZWUA
chains in the Genus database with same CATH topology
2OKNA 2ZSGA 2BHAA 1WY2A 4QR8A 1WL6A 4S2RP 4FKCA 2IW2A 4ZWPA 3CB6A 1W7VA 2BWWA 5CIKA 2BWXA 2BH3A 2BN7A 2BWYA 3OOOA 2BWSA 3BIPA 3L24A 4ZWOA 1WL9A 4R60A 3PEBA 3BIQA 5CE6A 5E2CA 5FCHA 2BHBA 4B28A 4S01A 3Q6DA 4ZNGA 4S2TP 1WLRA 3QOCA 4RGZ1 1W2MA 3CB5A 4EGEA 1KP0A 4RZYA 2BWTA 1M35A 3CTZA 5FCFA 2V3XA 5CDEA 3L7GA 4PV4A 5E5BA 4S00A 1WN1A 1PV9A 3OVKA 4RZZA 5CNXA 3IL0A 2V3YA 1N51A 2V3ZA 3PN9A 2BHCA 1JAWA 2BHDA 1A16A 3IG4A 5CDLA 3BITA 1CHMA 5CDVA 3I7MA 2HOWA 2BWUA 3O5VA 3RVAA 1WBQA 2BWVA 4ZWUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OKN A;  2ZSG A;  2BHA A;  1WY2 A;  4QR8 A;  1WL6 A;  4S2R P;  4FKC A;  2IW2 A;  4ZWP A;  3CB6 A;  1W7V A;  2BWW A;  5CIK A;  2BWX A;  2BH3 A;  2BN7 A;  2BWY A;  3OOO A;  2BWS A;  3BIP A;  3L24 A;  4ZWO A;  1WL9 A;  4R60 A;  3PEB A;  3BIQ A;  5CE6 A;  5E2C A;  5FCH A;  2BHB A;  4B28 A;  4S01 A;  3Q6D A;  4ZNG A;  4S2T P;  1WLR A;  3QOC A;  4RGZ 1;  1W2M A;  3CB5 A;  4EGE A;  1KP0 A;  4RZY A;  2BWT A;  1M35 A;  3CTZ A;  5FCF A;  2V3X A;  5CDE A;  3L7G A;  4PV4 A;  5E5B A;  4S00 A;  1WN1 A;  1PV9 A;  3OVK A;  4RZZ A;  5CNX A;  3IL0 A;  2V3Y A;  1N51 A;  2V3Z A;  3PN9 A;  2BHC A;  1JAW A;  2BHD A;  1A16 A;  3IG4 A;  5CDL A;  3BIT A;  1CHM A;  5CDV A;  3I7M A;  2HOW A;  2BWU A;  3O5V A;  3RVA A;  1WBQ A;  2BWV A;  4ZWU A; 
#chains in the Genus database with same CATH topology
 2OKN A;  2ZSG A;  2BHA A;  1WY2 A;  4QR8 A;  1WL6 A;  4S2R P;  4FKC A;  2IW2 A;  4ZWP A;  3CB6 A;  1W7V A;  2BWW A;  5CIK A;  2BWX A;  2BH3 A;  2BN7 A;  2BWY A;  3OOO A;  2BWS A;  3BIP A;  3L24 A;  4ZWO A;  1WL9 A;  4R60 A;  3PEB A;  3BIQ A;  5CE6 A;  5E2C A;  5FCH A;  2BHB A;  4B28 A;  4S01 A;  3Q6D A;  4ZNG A;  4S2T P;  1WLR A;  3QOC A;  4RGZ 1;  1W2M A;  3CB5 A;  4EGE A;  1KP0 A;  4RZY A;  2BWT A;  1M35 A;  3CTZ A;  5FCF A;  2V3X A;  5CDE A;  3L7G A;  4PV4 A;  5E5B A;  4S00 A;  1WN1 A;  1PV9 A;  3OVK A;  4RZZ A;  5CNX A;  3IL0 A;  2V3Y A;  1N51 A;  2V3Z A;  3PN9 A;  2BHC A;  1JAW A;  2BHD A;  1A16 A;  3IG4 A;  5CDL A;  3BIT A;  1CHM A;  5CDV A;  3I7M A;  2HOW A;  2BWU A;  3O5V A;  3RVA A;  1WBQ A;  2BWV A;  4ZWU A; 
#chains in the Genus database with same CATH homology
 2OKN A;  2ZSG A;  2BHA A;  1WY2 A;  4QR8 A;  1WL6 A;  4S2R P;  4FKC A;  2IW2 A;  4ZWP A;  3CB6 A;  1W7V A;  2BWW A;  5CIK A;  2BWX A;  2BH3 A;  2BN7 A;  2BWY A;  3OOO A;  2BWS A;  3BIP A;  3L24 A;  4ZWO A;  1WL9 A;  4R60 A;  3PEB A;  3BIQ A;  5CE6 A;  5E2C A;  5FCH A;  2BHB A;  4B28 A;  4S01 A;  3Q6D A;  4ZNG A;  4S2T P;  1WLR A;  3QOC A;  4RGZ 1;  1W2M A;  3CB5 A;  4EGE A;  1KP0 A;  4RZY A;  2BWT A;  1M35 A;  3CTZ A;  5FCF A;  2V3X A;  5CDE A;  3L7G A;  4PV4 A;  5E5B A;  4S00 A;  1WN1 A;  1PV9 A;  3OVK A;  4RZZ A;  5CNX A;  3IL0 A;  2V3Y A;  1N51 A;  2V3Z A;  3PN9 A;  2BHC A;  1JAW A;  2BHD A;  1A16 A;  3IG4 A;  5CDL A;  3BIT A;  1CHM A;  5CDV A;  3I7M A;  2HOW A;  2BWU A;  3O5V A;  3RVA A;  1WBQ A;  2BWV A;  4ZWU A; 
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