3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
5CE6A 5CDLA 3OVKA 2BN7A 5FCHA 4S2TP 3RVAA 3L24A 4PV4A 2HOWA 1W7VA 3IG4A 1WN1A 1WBQA 3OOOA 5CDEA 2V3ZA 5CIKA 3CB5A 1WLRA 5E2CA 4ZWOA 4RZZA 4R60A 2BHDA 2BWVA 2BWUA 4ZWPA 3PEBA 2V3XA 2BH3A 4RGZ1 1WY2A 4FKCA 3I7MA 1M35A 2BWSA 1WL9A 2BWXA 1WL6A 3O5VA 5E5BA 3IL0A 4ZNGA 4S00A 5CNXA 1PV9A 3L7GA 3PN9A 1CHMA 2BWWA 3BIQA 3CTZA 3BIPA 1N51A 3CB6A 5FCFA 4ZWUA 2BWTA 2BHBA 2OKNA 2BHAA 2V3YA 4QR8A 4B28A 2IW2A 4S01A 2BHCA 4S2RP 5CDVA 1A16A 2BWYA 3Q6DA 2ZSGA 4RZYA 1JAWA 1KP0A 1W2MA 3QOCA 4EGEA 3BITA
chains in the Genus database with same CATH superfamily
5CE6A 5CDLA 3OVKA 2BN7A 5FCHA 4S2TP 3RVAA 3L24A 4PV4A 2HOWA 1W7VA 3IG4A 1WN1A 1WBQA 3OOOA 5CDEA 2V3ZA 5CIKA 3CB5A 1WLRA 5E2CA 4ZWOA 4RZZA 4R60A 2BHDA 2BWVA 2BWUA 4ZWPA 3PEBA 2V3XA 2BH3A 4RGZ1 1WY2A 4FKCA 3I7MA 1M35A 2BWSA 1WL9A 2BWXA 1WL6A 3O5VA 5E5BA 3IL0A 4ZNGA 4S00A 5CNXA 1PV9A 3L7GA 3PN9A 1CHMA 2BWWA 3BIQA 3CTZA 3BIPA 1N51A 3CB6A 5FCFA 4ZWUA 2BWTA 2BHBA 2OKNA 2BHAA 2V3YA 4QR8A 4B28A 2IW2A 4S01A 2BHCA 4S2RP 5CDVA 1A16A 2BWYA 3Q6DA 2ZSGA 4RZYA 1JAWA 1KP0A 1W2MA 3QOCA 4EGEA 3BITA
chains in the Genus database with same CATH topology
5CE6A 5CDLA 3OVKA 2BN7A 5FCHA 4S2TP 3RVAA 3L24A 4PV4A 2HOWA 1W7VA 3IG4A 1WN1A 1WBQA 3OOOA 5CDEA 2V3ZA 5CIKA 3CB5A 1WLRA 5E2CA 4ZWOA 4RZZA 4R60A 2BHDA 2BWVA 2BWUA 4ZWPA 3PEBA 2V3XA 2BH3A 4RGZ1 1WY2A 4FKCA 3I7MA 1M35A 2BWSA 1WL9A 2BWXA 1WL6A 3O5VA 5E5BA 3IL0A 4ZNGA 4S00A 5CNXA 1PV9A 3L7GA 3PN9A 1CHMA 2BWWA 3BIQA 3CTZA 3BIPA 1N51A 3CB6A 5FCFA 4ZWUA 2BWTA 2BHBA 2OKNA 2BHAA 2V3YA 4QR8A 4B28A 2IW2A 4S01A 2BHCA 4S2RP 5CDVA 1A16A 2BWYA 3Q6DA 2ZSGA 4RZYA 1JAWA 1KP0A 1W2MA 3QOCA 4EGEA 3BITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CE6 A;  5CDL A;  3OVK A;  2BN7 A;  5FCH A;  4S2T P;  3RVA A;  3L24 A;  4PV4 A;  2HOW A;  1W7V A;  3IG4 A;  1WN1 A;  1WBQ A;  3OOO A;  5CDE A;  2V3Z A;  5CIK A;  3CB5 A;  1WLR A;  5E2C A;  4ZWO A;  4RZZ A;  4R60 A;  2BHD A;  2BWV A;  2BWU A;  4ZWP A;  3PEB A;  2V3X A;  2BH3 A;  4RGZ 1;  1WY2 A;  4FKC A;  3I7M A;  1M35 A;  2BWS A;  1WL9 A;  2BWX A;  1WL6 A;  3O5V A;  5E5B A;  3IL0 A;  4ZNG A;  4S00 A;  5CNX A;  1PV9 A;  3L7G A;  3PN9 A;  1CHM A;  2BWW A;  3BIQ A;  3CTZ A;  3BIP A;  1N51 A;  3CB6 A;  5FCF A;  4ZWU A;  2BWT A;  2BHB A;  2OKN A;  2BHA A;  2V3Y A;  4QR8 A;  4B28 A;  2IW2 A;  4S01 A;  2BHC A;  4S2R P;  5CDV A;  1A16 A;  2BWY A;  3Q6D A;  2ZSG A;  4RZY A;  1JAW A;  1KP0 A;  1W2M A;  3QOC A;  4EGE A;  3BIT A; 
#chains in the Genus database with same CATH topology
 5CE6 A;  5CDL A;  3OVK A;  2BN7 A;  5FCH A;  4S2T P;  3RVA A;  3L24 A;  4PV4 A;  2HOW A;  1W7V A;  3IG4 A;  1WN1 A;  1WBQ A;  3OOO A;  5CDE A;  2V3Z A;  5CIK A;  3CB5 A;  1WLR A;  5E2C A;  4ZWO A;  4RZZ A;  4R60 A;  2BHD A;  2BWV A;  2BWU A;  4ZWP A;  3PEB A;  2V3X A;  2BH3 A;  4RGZ 1;  1WY2 A;  4FKC A;  3I7M A;  1M35 A;  2BWS A;  1WL9 A;  2BWX A;  1WL6 A;  3O5V A;  5E5B A;  3IL0 A;  4ZNG A;  4S00 A;  5CNX A;  1PV9 A;  3L7G A;  3PN9 A;  1CHM A;  2BWW A;  3BIQ A;  3CTZ A;  3BIP A;  1N51 A;  3CB6 A;  5FCF A;  4ZWU A;  2BWT A;  2BHB A;  2OKN A;  2BHA A;  2V3Y A;  4QR8 A;  4B28 A;  2IW2 A;  4S01 A;  2BHC A;  4S2R P;  5CDV A;  1A16 A;  2BWY A;  3Q6D A;  2ZSG A;  4RZY A;  1JAW A;  1KP0 A;  1W2M A;  3QOC A;  4EGE A;  3BIT A; 
#chains in the Genus database with same CATH homology
 5CE6 A;  5CDL A;  3OVK A;  2BN7 A;  5FCH A;  4S2T P;  3RVA A;  3L24 A;  4PV4 A;  2HOW A;  1W7V A;  3IG4 A;  1WN1 A;  1WBQ A;  3OOO A;  5CDE A;  2V3Z A;  5CIK A;  3CB5 A;  1WLR A;  5E2C A;  4ZWO A;  4RZZ A;  4R60 A;  2BHD A;  2BWV A;  2BWU A;  4ZWP A;  3PEB A;  2V3X A;  2BH3 A;  4RGZ 1;  1WY2 A;  4FKC A;  3I7M A;  1M35 A;  2BWS A;  1WL9 A;  2BWX A;  1WL6 A;  3O5V A;  5E5B A;  3IL0 A;  4ZNG A;  4S00 A;  5CNX A;  1PV9 A;  3L7G A;  3PN9 A;  1CHM A;  2BWW A;  3BIQ A;  3CTZ A;  3BIP A;  1N51 A;  3CB6 A;  5FCF A;  4ZWU A;  2BWT A;  2BHB A;  2OKN A;  2BHA A;  2V3Y A;  4QR8 A;  4B28 A;  2IW2 A;  4S01 A;  2BHC A;  4S2R P;  5CDV A;  1A16 A;  2BWY A;  3Q6D A;  2ZSG A;  4RZY A;  1JAW A;  1KP0 A;  1W2M A;  3QOC A;  4EGE A;  3BIT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...