3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
source organism Streptococcus pneumoniae
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
2BWTA 1PV9A 1W2MA 4RZZA 4ZWPA 1A16A 4FKCA 4RZYA 5CDLA 5CE6A 3IG4A 2BWSA 2V3ZA 3Q6DA 4RGZ1 5CDEA 4ZWOA 3BITA 5FCHA 4R60A 1W7VA 3OVKA 3BIPA 3L7GA 4ZWUA 3QOCA 4PV4A 2ZSGA 2BWXA 3CTZA 2OKNA 5CNXA 4EGEA 1WN1A 1WL6A 5E2CA 1WBQA 4B28A 3RVAA 1M35A 2BWWA 5CDVA 1N51A 2BHBA 2BHDA 1KP0A 2BN7A 4S01A 5FCFA 1CHMA 2BWVA 3I7MA 4ZNGA 3OOOA 3O5VA 2IW2A 1WL9A 3CB6A 2BWUA 3IL0A 2BHCA 3PEBA 5CIKA 1WLRA 1WY2A 3PN9A 4S00A 4S2RP 2HOWA 1JAWA 2BWYA 2V3XA 3BIQA 2BH3A 3CB5A 3L24A 4S2TP 2BHAA 4QR8A 5E5BA 2V3YA
chains in the Genus database with same CATH superfamily
2BWTA 1PV9A 1W2MA 4RZZA 4ZWPA 1A16A 4FKCA 4RZYA 5CDLA 5CE6A 3IG4A 2BWSA 2V3ZA 3Q6DA 4RGZ1 5CDEA 4ZWOA 3BITA 5FCHA 4R60A 1W7VA 3OVKA 3BIPA 3L7GA 4ZWUA 3QOCA 4PV4A 2ZSGA 2BWXA 3CTZA 2OKNA 5CNXA 4EGEA 1WN1A 1WL6A 5E2CA 1WBQA 4B28A 3RVAA 1M35A 2BWWA 5CDVA 1N51A 2BHBA 2BHDA 1KP0A 2BN7A 4S01A 5FCFA 1CHMA 2BWVA 3I7MA 4ZNGA 3OOOA 3O5VA 2IW2A 1WL9A 3CB6A 2BWUA 3IL0A 2BHCA 3PEBA 5CIKA 1WLRA 1WY2A 3PN9A 4S00A 4S2RP 2HOWA 1JAWA 2BWYA 2V3XA 3BIQA 2BH3A 3CB5A 3L24A 4S2TP 2BHAA 4QR8A 5E5BA 2V3YA
chains in the Genus database with same CATH topology
2BWTA 1PV9A 1W2MA 4RZZA 4ZWPA 1A16A 4FKCA 4RZYA 5CDLA 5CE6A 3IG4A 2BWSA 2V3ZA 3Q6DA 4RGZ1 5CDEA 4ZWOA 3BITA 5FCHA 4R60A 1W7VA 3OVKA 3BIPA 3L7GA 4ZWUA 3QOCA 4PV4A 2ZSGA 2BWXA 3CTZA 2OKNA 5CNXA 4EGEA 1WN1A 1WL6A 5E2CA 1WBQA 4B28A 3RVAA 1M35A 2BWWA 5CDVA 1N51A 2BHBA 2BHDA 1KP0A 2BN7A 4S01A 5FCFA 1CHMA 2BWVA 3I7MA 4ZNGA 3OOOA 3O5VA 2IW2A 1WL9A 3CB6A 2BWUA 3IL0A 2BHCA 3PEBA 5CIKA 1WLRA 1WY2A 3PN9A 4S00A 4S2RP 2HOWA 1JAWA 2BWYA 2V3XA 3BIQA 2BH3A 3CB5A 3L24A 4S2TP 2BHAA 4QR8A 5E5BA 2V3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWT A;  1PV9 A;  1W2M A;  4RZZ A;  4ZWP A;  1A16 A;  4FKC A;  4RZY A;  5CDL A;  5CE6 A;  3IG4 A;  2BWS A;  2V3Z A;  3Q6D A;  4RGZ 1;  5CDE A;  4ZWO A;  3BIT A;  5FCH A;  4R60 A;  1W7V A;  3OVK A;  3BIP A;  3L7G A;  4ZWU A;  3QOC A;  4PV4 A;  2ZSG A;  2BWX A;  3CTZ A;  2OKN A;  5CNX A;  4EGE A;  1WN1 A;  1WL6 A;  5E2C A;  1WBQ A;  4B28 A;  3RVA A;  1M35 A;  2BWW A;  5CDV A;  1N51 A;  2BHB A;  2BHD A;  1KP0 A;  2BN7 A;  4S01 A;  5FCF A;  1CHM A;  2BWV A;  3I7M A;  4ZNG A;  3OOO A;  3O5V A;  2IW2 A;  1WL9 A;  3CB6 A;  2BWU A;  3IL0 A;  2BHC A;  3PEB A;  5CIK A;  1WLR A;  1WY2 A;  3PN9 A;  4S00 A;  4S2R P;  2HOW A;  1JAW A;  2BWY A;  2V3X A;  3BIQ A;  2BH3 A;  3CB5 A;  3L24 A;  4S2T P;  2BHA A;  4QR8 A;  5E5B A;  2V3Y A; 
#chains in the Genus database with same CATH topology
 2BWT A;  1PV9 A;  1W2M A;  4RZZ A;  4ZWP A;  1A16 A;  4FKC A;  4RZY A;  5CDL A;  5CE6 A;  3IG4 A;  2BWS A;  2V3Z A;  3Q6D A;  4RGZ 1;  5CDE A;  4ZWO A;  3BIT A;  5FCH A;  4R60 A;  1W7V A;  3OVK A;  3BIP A;  3L7G A;  4ZWU A;  3QOC A;  4PV4 A;  2ZSG A;  2BWX A;  3CTZ A;  2OKN A;  5CNX A;  4EGE A;  1WN1 A;  1WL6 A;  5E2C A;  1WBQ A;  4B28 A;  3RVA A;  1M35 A;  2BWW A;  5CDV A;  1N51 A;  2BHB A;  2BHD A;  1KP0 A;  2BN7 A;  4S01 A;  5FCF A;  1CHM A;  2BWV A;  3I7M A;  4ZNG A;  3OOO A;  3O5V A;  2IW2 A;  1WL9 A;  3CB6 A;  2BWU A;  3IL0 A;  2BHC A;  3PEB A;  5CIK A;  1WLR A;  1WY2 A;  3PN9 A;  4S00 A;  4S2R P;  2HOW A;  1JAW A;  2BWY A;  2V3X A;  3BIQ A;  2BH3 A;  3CB5 A;  3L24 A;  4S2T P;  2BHA A;  4QR8 A;  5E5B A;  2V3Y A; 
#chains in the Genus database with same CATH homology
 2BWT A;  1PV9 A;  1W2M A;  4RZZ A;  4ZWP A;  1A16 A;  4FKC A;  4RZY A;  5CDL A;  5CE6 A;  3IG4 A;  2BWS A;  2V3Z A;  3Q6D A;  4RGZ 1;  5CDE A;  4ZWO A;  3BIT A;  5FCH A;  4R60 A;  1W7V A;  3OVK A;  3BIP A;  3L7G A;  4ZWU A;  3QOC A;  4PV4 A;  2ZSG A;  2BWX A;  3CTZ A;  2OKN A;  5CNX A;  4EGE A;  1WN1 A;  1WL6 A;  5E2C A;  1WBQ A;  4B28 A;  3RVA A;  1M35 A;  2BWW A;  5CDV A;  1N51 A;  2BHB A;  2BHD A;  1KP0 A;  2BN7 A;  4S01 A;  5FCF A;  1CHM A;  2BWV A;  3I7M A;  4ZNG A;  3OOO A;  3O5V A;  2IW2 A;  1WL9 A;  3CB6 A;  2BWU A;  3IL0 A;  2BHC A;  3PEB A;  5CIK A;  1WLR A;  1WY2 A;  3PN9 A;  4S00 A;  4S2R P;  2HOW A;  1JAW A;  2BWY A;  2V3X A;  3BIQ A;  2BH3 A;  3CB5 A;  3L24 A;  4S2T P;  2BHA A;  4QR8 A;  5E5B A;  2V3Y A; 
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