4ZNGA

X-ray crystallography of recombinant lactococcus lactis prolidase
Total Genus 117
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
362
structure length
362
Chain Sequence
MSKIERISAFLNDKEVDMTFITNPTTLNYLTGLAIDPHERIAGLMIFRDSTPMLFTPALEVEKAKEHTSGLDIFGYEDSQNPWEVVKNHVKSDVKSIAVEFSDIPLAKTEGLKAQFGDINFVNLTPLIERMRLIKSADEIEKMKVAGDFADKCFEIGFATAAERNGVTESDIVAKIEYEMKRMGVPQMSFDTLVLSGARAANPHGAPENVEIQENKLLLFDLGVMSGGYASDATRTIAIGQPNDFDAEIHKIVKEAQQAAMDFIKPGVTAHEVDAVARDLITKAGYGEYFNHRLGHGIGMDVHEYPSIVAGNDLVIQEGMCFSNEPGIYIPGKVGVRIEDCLYVTENGCESFTHTDHDLLIF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Lactococcus lactis
publication title X-ray crystallography of recombinant Lactococcus lactis prolidase
rcsb
molecule keywords Prolidase
total genus 117
structure length 362
sequence length 362
chains with identical sequence B, C
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4zngA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4zngA02
2ZSGA 2BWUA 5E2CA 2EVMA 2Q92A 4Z7MA 1B59A 4B28A 4IKSA 3PEBA 3OOOA 2GGCA 4ZWUA 4U6JA 4FO8A 1C27A 4RZZA 3PKAA 1JAWA 1C21A 3PKBA 2Q94A 1KQ9A 1WY2A 4QR8A 2V6CA 3O5VA 3PKEA 3D27A 2GGBA 2BH3A 1PV9A 1YJ3A 3CB5A 3OVKA 1R58A 1WL6A 2NQ7A 1C23A 4FO7A 2V3XA 1A16A 4ZNGA 1R5GA 4IKUA 4JUQA 2P9AA 2BHBA 2BWVA 1XNZA 4FLIA 2EVCA 4U73A 3MR1A 4U75A 4KM3A 5CDEA 3RORA 3Q6DA 2EA4A 2NQ6A 1YVMA 4U70A 4IF7A 2GG5A 1W2MA 5FCFA 2P99A 5CIKA 2GG0A 5CDLA 3IU8A 2MATA 2GU4A 2V3YA 4S01A 5CE6A 1YW7A 2GU7A 1CHMA 5CDVA 1WL9A 2B3LA 1W7VA 2B3KA 3IU7A 3S6BA 3IL0A 4IKRA 4U6ZA 1B6AA 2BB7A 4IPAA 1QXZA 4ZWPA 4FLKA 5D6EA 3BITA 2DFIA 1XGOA 2B3HA 1QZYA 1WKMA 4U76A 2EA2A 4U6CA 2ADUA 5JHUA 5D6FA 3FMRA 2GU5A 3BIPA 1BOAA 4PV4A 2P98A 3FM3A 4A6VA 5CNXA 2GG7A 4A6WA 3IU9A 3CB6A 4U69A 4U71A 2BWSA 3CTZA 4RGZ1 3PN9A 2BWTA 1WBQA 2V3ZA 1O0XA 2GU6A 4HXXA 2IW2A 2G6PA 4FLLA 4S2RP 1QXYA 4EGEA 2Q8KA 1QXWA 4IU6A 2BWWA 1MATA 4IKTA 2GA2A 4U6EA 1WLRA 4MATA 3TAVA 2GTXA 2Q96A 2BHAA 2BN7A 4IDYA 1XGSA 2BWYA 4U1BA 3RVAA 3MATA 2GG3A 4FUKA 1M35A 2Q93A 3QOCA 5CLSA 1KP0A 3FMQA 3I7MA 2OKNA 3PKCA 4OOKA 5JFRA 5FCHA 1BN5A 2EVOA 3L7GA 1YW9A 2GG9A 2GG8A 1N51A 1XGMA 1YW8A 2HOWA 2GG2A 4IECA 2BHDA 1Y1NA 1C22A 1KQ0A 3IG4A 1R5HA 4U6WA 2GZ5A 5JI6A 4FKCA 1WN1A 4FLJA 1C24A 1XGNA 3MX6A 3BIQA 4S2TP 3TB5A 3PKDA 2BWXA 3L24A 4R60A 2OAZA 2BHCA 4RZYA 4S00A 4ZWOA 5E5BA 4PNCA 2Q95A
chains in the Genus database with same CATH superfamily
2ZSGA 2BWUA 5E2CA 2EVMA 2Q92A 4Z7MA 1B59A 4B28A 4IKSA 3PEBA 3OOOA 2GGCA 4ZWUA 4U6JA 4FO8A 1C27A 4RZZA 3PKAA 1JAWA 1C21A 3PKBA 2Q94A 1KQ9A 1WY2A 4QR8A 2V6CA 3O5VA 3PKEA 3D27A 2GGBA 2BH3A 1PV9A 1YJ3A 3CB5A 3OVKA 1R58A 1WL6A 2NQ7A 1C23A 4FO7A 2V3XA 1A16A 4ZNGA 1R5GA 4IKUA 4JUQA 2P9AA 2BHBA 2BWVA 1XNZA 4FLIA 2EVCA 4U73A 3MR1A 4U75A 4KM3A 5CDEA 3RORA 3Q6DA 2EA4A 2NQ6A 1YVMA 4U70A 4IF7A 2GG5A 1W2MA 5FCFA 2P99A 5CIKA 2GG0A 5CDLA 3IU8A 2MATA 2GU4A 2V3YA 4S01A 5CE6A 1YW7A 2GU7A 1CHMA 5CDVA 1WL9A 2B3LA 1W7VA 2B3KA 3IU7A 3S6BA 3IL0A 4IKRA 4U6ZA 1B6AA 2BB7A 4IPAA 1QXZA 4ZWPA 4FLKA 5D6EA 3BITA 2DFIA 1XGOA 2B3HA 1QZYA 1WKMA 4U76A 2EA2A 4U6CA 2ADUA 5JHUA 5D6FA 3FMRA 2GU5A 3BIPA 1BOAA 4PV4A 2P98A 3FM3A 4A6VA 5CNXA 2GG7A 4A6WA 3IU9A 3CB6A 4U69A 4U71A 2BWSA 3CTZA 4RGZ1 3PN9A 2BWTA 1WBQA 2V3ZA 1O0XA 2GU6A 4HXXA 2IW2A 2G6PA 4FLLA 4S2RP 1QXYA 4EGEA 2Q8KA 1QXWA 4IU6A 2BWWA 1MATA 4IKTA 2GA2A 4U6EA 1WLRA 4MATA 3TAVA 2GTXA 2Q96A 2BHAA 2BN7A 4IDYA 1XGSA 2BWYA 4U1BA 3RVAA 3MATA 2GG3A 4FUKA 1M35A 2Q93A 3QOCA 5CLSA 1KP0A 3FMQA 3I7MA 2OKNA 3PKCA 4OOKA 5JFRA 5FCHA 1BN5A 2EVOA 3L7GA 1YW9A 2GG9A 2GG8A 1N51A 1XGMA 1YW8A 2HOWA 2GG2A 4IECA 2BHDA 1Y1NA 1C22A 1KQ0A 3IG4A 1R5HA 4U6WA 2GZ5A 5JI6A 4FKCA 1WN1A 4FLJA 1C24A 1XGNA 3MX6A 3BIQA 4S2TP 3TB5A 3PKDA 2BWXA 3L24A 4R60A 2OAZA 2BHCA 4RZYA 4S00A 4ZWOA 5E5BA 4PNCA 2Q95A
chains in the Genus database with same CATH topology
2ZSGA 2BWUA 5E2CA 2EVMA 2Q92A 4Z7MA 1B59A 4B28A 4IKSA 3PEBA 3OOOA 2GGCA 4ZWUA 4U6JA 4FO8A 1C27A 4RZZA 3PKAA 1JAWA 1C21A 3PKBA 2Q94A 1KQ9A 1WY2A 4QR8A 2V6CA 3O5VA 3PKEA 3D27A 2GGBA 2BH3A 1PV9A 1YJ3A 3CB5A 3OVKA 1R58A 1WL6A 2NQ7A 1C23A 4FO7A 2V3XA 1A16A 4ZNGA 1R5GA 4IKUA 4JUQA 2P9AA 2BHBA 2BWVA 1XNZA 4FLIA 2EVCA 4U73A 3MR1A 4U75A 4KM3A 5CDEA 3RORA 3Q6DA 2EA4A 2NQ6A 1YVMA 4U70A 4IF7A 2GG5A 1W2MA 5FCFA 2P99A 5CIKA 2GG0A 5CDLA 3IU8A 2MATA 2GU4A 2V3YA 4S01A 5CE6A 1YW7A 2GU7A 1CHMA 5CDVA 1WL9A 2B3LA 1W7VA 2B3KA 3IU7A 3S6BA 3IL0A 4IKRA 4U6ZA 1B6AA 2BB7A 4IPAA 1QXZA 4ZWPA 4FLKA 5D6EA 3BITA 2DFIA 1XGOA 2B3HA 1QZYA 1WKMA 4U76A 2EA2A 4U6CA 2ADUA 5JHUA 5D6FA 3FMRA 2GU5A 3BIPA 1BOAA 4PV4A 2P98A 3FM3A 4A6VA 5CNXA 2GG7A 4A6WA 3IU9A 3CB6A 4U69A 4U71A 2BWSA 3CTZA 4RGZ1 3PN9A 2BWTA 1WBQA 2V3ZA 1O0XA 2GU6A 4HXXA 2IW2A 2G6PA 4FLLA 4S2RP 1QXYA 4EGEA 2Q8KA 1QXWA 4IU6A 2BWWA 1MATA 4IKTA 2GA2A 4U6EA 1WLRA 4MATA 3TAVA 2GTXA 2Q96A 2BHAA 2BN7A 4IDYA 1XGSA 2BWYA 4U1BA 3RVAA 3MATA 2GG3A 4FUKA 1M35A 2Q93A 3QOCA 5CLSA 1KP0A 3FMQA 3I7MA 2OKNA 3PKCA 4OOKA 5JFRA 5FCHA 1BN5A 2EVOA 3L7GA 1YW9A 2GG9A 2GG8A 1N51A 1XGMA 1YW8A 2HOWA 2GG2A 4IECA 2BHDA 1Y1NA 1C22A 1KQ0A 3IG4A 1R5HA 4U6WA 2GZ5A 5JI6A 4FKCA 1WN1A 4FLJA 1C24A 1XGNA 3MX6A 3BIQA 4S2TP 3TB5A 3PKDA 2BWXA 3L24A 4R60A 2OAZA 2BHCA 4RZYA 4S00A 4ZWOA 5E5BA 4PNCA 2Q95A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZSG A;  2BWU A;  5E2C A;  2EVM A;  2Q92 A;  4Z7M A;  1B59 A;  4B28 A;  4IKS A;  3PEB A;  3OOO A;  2GGC A;  4ZWU A;  4U6J A;  4FO8 A;  1C27 A;  4RZZ A;  3PKA A;  1JAW A;  1C21 A;  3PKB A;  2Q94 A;  1KQ9 A;  1WY2 A;  4QR8 A;  2V6C A;  3O5V A;  3PKE A;  3D27 A;  2GGB A;  2BH3 A;  1PV9 A;  1YJ3 A;  3CB5 A;  3OVK A;  1R58 A;  1WL6 A;  2NQ7 A;  1C23 A;  4FO7 A;  2V3X A;  1A16 A;  4ZNG A;  1R5G A;  4IKU A;  4JUQ A;  2P9A A;  2BHB A;  2BWV A;  1XNZ A;  4FLI A;  2EVC A;  4U73 A;  3MR1 A;  4U75 A;  4KM3 A;  5CDE A;  3ROR A;  3Q6D A;  2EA4 A;  2NQ6 A;  1YVM A;  4U70 A;  4IF7 A;  2GG5 A;  1W2M A;  5FCF A;  2P99 A;  5CIK A;  2GG0 A;  5CDL A;  3IU8 A;  2MAT A;  2GU4 A;  2V3Y A;  4S01 A;  5CE6 A;  1YW7 A;  2GU7 A;  1CHM A;  5CDV A;  1WL9 A;  2B3L A;  1W7V A;  2B3K A;  3IU7 A;  3S6B A;  3IL0 A;  4IKR A;  4U6Z A;  1B6A A;  2BB7 A;  4IPA A;  1QXZ A;  4ZWP A;  4FLK A;  5D6E A;  3BIT A;  2DFI A;  1XGO A;  2B3H A;  1QZY A;  1WKM A;  4U76 A;  2EA2 A;  4U6C A;  2ADU A;  5JHU A;  5D6F A;  3FMR A;  2GU5 A;  3BIP A;  1BOA A;  4PV4 A;  2P98 A;  3FM3 A;  4A6V A;  5CNX A;  2GG7 A;  4A6W A;  3IU9 A;  3CB6 A;  4U69 A;  4U71 A;  2BWS A;  3CTZ A;  4RGZ 1;  3PN9 A;  2BWT A;  1WBQ A;  2V3Z A;  1O0X A;  2GU6 A;  4HXX A;  2IW2 A;  2G6P A;  4FLL A;  4S2R P;  1QXY A;  4EGE A;  2Q8K A;  1QXW A;  4IU6 A;  2BWW A;  1MAT A;  4IKT A;  2GA2 A;  4U6E A;  1WLR A;  4MAT A;  3TAV A;  2GTX A;  2Q96 A;  2BHA A;  2BN7 A;  4IDY A;  1XGS A;  2BWY A;  4U1B A;  3RVA A;  3MAT A;  2GG3 A;  4FUK A;  1M35 A;  2Q93 A;  3QOC A;  5CLS A;  1KP0 A;  3FMQ A;  3I7M A;  2OKN A;  3PKC A;  4OOK A;  5JFR A;  5FCH A;  1BN5 A;  2EVO A;  3L7G A;  1YW9 A;  2GG9 A;  2GG8 A;  1N51 A;  1XGM A;  1YW8 A;  2HOW A;  2GG2 A;  4IEC A;  2BHD A;  1Y1N A;  1C22 A;  1KQ0 A;  3IG4 A;  1R5H A;  4U6W A;  2GZ5 A;  5JI6 A;  4FKC A;  1WN1 A;  4FLJ A;  1C24 A;  1XGN A;  3MX6 A;  3BIQ A;  4S2T P;  3TB5 A;  3PKD A;  2BWX A;  3L24 A;  4R60 A;  2OAZ A;  2BHC A;  4RZY A;  4S00 A;  4ZWO A;  5E5B A;  4PNC A;  2Q95 A; 
#chains in the Genus database with same CATH topology
 2ZSG A;  2BWU A;  5E2C A;  2EVM A;  2Q92 A;  4Z7M A;  1B59 A;  4B28 A;  4IKS A;  3PEB A;  3OOO A;  2GGC A;  4ZWU A;  4U6J A;  4FO8 A;  1C27 A;  4RZZ A;  3PKA A;  1JAW A;  1C21 A;  3PKB A;  2Q94 A;  1KQ9 A;  1WY2 A;  4QR8 A;  2V6C A;  3O5V A;  3PKE A;  3D27 A;  2GGB A;  2BH3 A;  1PV9 A;  1YJ3 A;  3CB5 A;  3OVK A;  1R58 A;  1WL6 A;  2NQ7 A;  1C23 A;  4FO7 A;  2V3X A;  1A16 A;  4ZNG A;  1R5G A;  4IKU A;  4JUQ A;  2P9A A;  2BHB A;  2BWV A;  1XNZ A;  4FLI A;  2EVC A;  4U73 A;  3MR1 A;  4U75 A;  4KM3 A;  5CDE A;  3ROR A;  3Q6D A;  2EA4 A;  2NQ6 A;  1YVM A;  4U70 A;  4IF7 A;  2GG5 A;  1W2M A;  5FCF A;  2P99 A;  5CIK A;  2GG0 A;  5CDL A;  3IU8 A;  2MAT A;  2GU4 A;  2V3Y A;  4S01 A;  5CE6 A;  1YW7 A;  2GU7 A;  1CHM A;  5CDV A;  1WL9 A;  2B3L A;  1W7V A;  2B3K A;  3IU7 A;  3S6B A;  3IL0 A;  4IKR A;  4U6Z A;  1B6A A;  2BB7 A;  4IPA A;  1QXZ A;  4ZWP A;  4FLK A;  5D6E A;  3BIT A;  2DFI A;  1XGO A;  2B3H A;  1QZY A;  1WKM A;  4U76 A;  2EA2 A;  4U6C A;  2ADU A;  5JHU A;  5D6F A;  3FMR A;  2GU5 A;  3BIP A;  1BOA A;  4PV4 A;  2P98 A;  3FM3 A;  4A6V A;  5CNX A;  2GG7 A;  4A6W A;  3IU9 A;  3CB6 A;  4U69 A;  4U71 A;  2BWS A;  3CTZ A;  4RGZ 1;  3PN9 A;  2BWT A;  1WBQ A;  2V3Z A;  1O0X A;  2GU6 A;  4HXX A;  2IW2 A;  2G6P A;  4FLL A;  4S2R P;  1QXY A;  4EGE A;  2Q8K A;  1QXW A;  4IU6 A;  2BWW A;  1MAT A;  4IKT A;  2GA2 A;  4U6E A;  1WLR A;  4MAT A;  3TAV A;  2GTX A;  2Q96 A;  2BHA A;  2BN7 A;  4IDY A;  1XGS A;  2BWY A;  4U1B A;  3RVA A;  3MAT A;  2GG3 A;  4FUK A;  1M35 A;  2Q93 A;  3QOC A;  5CLS A;  1KP0 A;  3FMQ A;  3I7M A;  2OKN A;  3PKC A;  4OOK A;  5JFR A;  5FCH A;  1BN5 A;  2EVO A;  3L7G A;  1YW9 A;  2GG9 A;  2GG8 A;  1N51 A;  1XGM A;  1YW8 A;  2HOW A;  2GG2 A;  4IEC A;  2BHD A;  1Y1N A;  1C22 A;  1KQ0 A;  3IG4 A;  1R5H A;  4U6W A;  2GZ5 A;  5JI6 A;  4FKC A;  1WN1 A;  4FLJ A;  1C24 A;  1XGN A;  3MX6 A;  3BIQ A;  4S2T P;  3TB5 A;  3PKD A;  2BWX A;  3L24 A;  4R60 A;  2OAZ A;  2BHC A;  4RZY A;  4S00 A;  4ZWO A;  5E5B A;  4PNC A;  2Q95 A; 
#chains in the Genus database with same CATH homology
 2ZSG A;  2BWU A;  5E2C A;  2EVM A;  2Q92 A;  4Z7M A;  1B59 A;  4B28 A;  4IKS A;  3PEB A;  3OOO A;  2GGC A;  4ZWU A;  4U6J A;  4FO8 A;  1C27 A;  4RZZ A;  3PKA A;  1JAW A;  1C21 A;  3PKB A;  2Q94 A;  1KQ9 A;  1WY2 A;  4QR8 A;  2V6C A;  3O5V A;  3PKE A;  3D27 A;  2GGB A;  2BH3 A;  1PV9 A;  1YJ3 A;  3CB5 A;  3OVK A;  1R58 A;  1WL6 A;  2NQ7 A;  1C23 A;  4FO7 A;  2V3X A;  1A16 A;  4ZNG A;  1R5G A;  4IKU A;  4JUQ A;  2P9A A;  2BHB A;  2BWV A;  1XNZ A;  4FLI A;  2EVC A;  4U73 A;  3MR1 A;  4U75 A;  4KM3 A;  5CDE A;  3ROR A;  3Q6D A;  2EA4 A;  2NQ6 A;  1YVM A;  4U70 A;  4IF7 A;  2GG5 A;  1W2M A;  5FCF A;  2P99 A;  5CIK A;  2GG0 A;  5CDL A;  3IU8 A;  2MAT A;  2GU4 A;  2V3Y A;  4S01 A;  5CE6 A;  1YW7 A;  2GU7 A;  1CHM A;  5CDV A;  1WL9 A;  2B3L A;  1W7V A;  2B3K A;  3IU7 A;  3S6B A;  3IL0 A;  4IKR A;  4U6Z A;  1B6A A;  2BB7 A;  4IPA A;  1QXZ A;  4ZWP A;  4FLK A;  5D6E A;  3BIT A;  2DFI A;  1XGO A;  2B3H A;  1QZY A;  1WKM A;  4U76 A;  2EA2 A;  4U6C A;  2ADU A;  5JHU A;  5D6F A;  3FMR A;  2GU5 A;  3BIP A;  1BOA A;  4PV4 A;  2P98 A;  3FM3 A;  4A6V A;  5CNX A;  2GG7 A;  4A6W A;  3IU9 A;  3CB6 A;  4U69 A;  4U71 A;  2BWS A;  3CTZ A;  4RGZ 1;  3PN9 A;  2BWT A;  1WBQ A;  2V3Z A;  1O0X A;  2GU6 A;  4HXX A;  2IW2 A;  2G6P A;  4FLL A;  4S2R P;  1QXY A;  4EGE A;  2Q8K A;  1QXW A;  4IU6 A;  2BWW A;  1MAT A;  4IKT A;  2GA2 A;  4U6E A;  1WLR A;  4MAT A;  3TAV A;  2GTX A;  2Q96 A;  2BHA A;  2BN7 A;  4IDY A;  1XGS A;  2BWY A;  4U1B A;  3RVA A;  3MAT A;  2GG3 A;  4FUK A;  1M35 A;  2Q93 A;  3QOC A;  5CLS A;  1KP0 A;  3FMQ A;  3I7M A;  2OKN A;  3PKC A;  4OOK A;  5JFR A;  5FCH A;  1BN5 A;  2EVO A;  3L7G A;  1YW9 A;  2GG9 A;  2GG8 A;  1N51 A;  1XGM A;  1YW8 A;  2HOW A;  2GG2 A;  4IEC A;  2BHD A;  1Y1N A;  1C22 A;  1KQ0 A;  3IG4 A;  1R5H A;  4U6W A;  2GZ5 A;  5JI6 A;  4FKC A;  1WN1 A;  4FLJ A;  1C24 A;  1XGN A;  3MX6 A;  3BIQ A;  4S2T P;  3TB5 A;  3PKD A;  2BWX A;  3L24 A;  4R60 A;  2OAZ A;  2BHC A;  4RZY A;  4S00 A;  4ZWO A;  5E5B A;  4PNC A;  2Q95 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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