4ZNGA

X-ray crystallography of recombinant lactococcus lactis prolidase
Total Genus 117
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
362
structure length
362
Chain Sequence
MSKIERISAFLNDKEVDMTFITNPTTLNYLTGLAIDPHERIAGLMIFRDSTPMLFTPALEVEKAKEHTSGLDIFGYEDSQNPWEVVKNHVKSDVKSIAVEFSDIPLAKTEGLKAQFGDINFVNLTPLIERMRLIKSADEIEKMKVAGDFADKCFEIGFATAAERNGVTESDIVAKIEYEMKRMGVPQMSFDTLVLSGARAANPHGAPENVEIQENKLLLFDLGVMSGGYASDATRTIAIGQPNDFDAEIHKIVKEAQQAAMDFIKPGVTAHEVDAVARDLITKAGYGEYFNHRLGHGIGMDVHEYPSIVAGNDLVIQEGMCFSNEPGIYIPGKVGVRIEDCLYVTENGCESFTHTDHDLLIF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray crystallography of recombinant Lactococcus lactis prolidase
rcsb
source organism Lactococcus lactis
molecule tags Hydrolase
molecule keywords Prolidase
total genus 117
structure length 362
sequence length 362
chains with identical sequence B, C
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4zngA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4zngA02
2EVMA 3TB5A 4IKSA 1PV9A 3RORA 4IKUA 1C21A 2GG5A 1XGNA 3OVKA 2V3XA 1QXZA 3D27A 4FLIA 2GZ5A 1C27A 3IU7A 4U6WA 2BHCA 4U76A 3OOOA 4RGZ1 2BN7A 1R58A 3MATA 2V6CA 4U6ZA 5CLSA 2V3ZA 1KP0A 1YW7A 1XGOA 5CNXA 4ZNGA 1W2MA 1XNZA 3FM3A 2EA2A 2NQ6A 2GG0A 1N51A 2ZSGA 4EGEA 4IF7A 3IU9A 4IKTA 4IKRA 3CTZA 5JFRA 3MR1A 2OAZA 2BWXA 1CHMA 2P9AA 3S6BA 4FKCA 2EA4A 2Q94A 2EVOA 4OOKA 2Q95A 5FCHA 1WL9A 4A6WA 4QR8A 5E2CA 2BWVA 4U6EA 3Q6DA 4U69A 5CDLA 1XGMA 4S00A 1A16A 1R5GA 1KQ9A 4S2TP 2Q8KA 3CB5A 1BOAA 3FMQA 4IECA 1WN1A 1MATA 5D6FA 2B3HA 2B3KA 1WY2A 1YJ3A 3O5VA 3PEBA 4ZWPA 5CIKA 2BWYA 1WLRA 5E5BA 1QXYA 2NQ7A 3MX6A 2BWUA 4U6CA 3PKCA 3BITA 4KM3A 4PNCA 5JI6A 2V3YA 5D6EA 2GG9A 1Y1NA 1YW8A 4S01A 2GA2A 4FUKA 3TAVA 4HXXA 2HOWA 4B28A 2EVCA 4A6VA 3BIQA 4S2RP 4ZWUA 1KQ0A 2GG8A 2Q93A 4U73A 3FMRA 3PKBA 2BWSA 4FO8A 3PKDA 2GU5A 4IPAA 3IG4A 4MATA 2BHBA 4IU6A 1WL6A 2GG2A 4RZYA 3PKAA 4Z7MA 2BWTA 3QOCA 1WKMA 2IW2A 2GG7A 3RVAA 4JUQA 3PN9A 4U70A 3IU8A 1C22A 3L24A 1B59A 4U6JA 1M35A 1C23A 1W7VA 2G6PA 1B6AA 2BB7A 3PKEA 4R60A 5CDEA 2ADUA 3IL0A 2MATA 2BWWA 3CB6A 1XGSA 2GU7A 3I7MA 2Q92A 1O0XA 2BHAA 2DFIA 1QXWA 2OKNA 4ZWOA 2GU6A 1JAWA 1QZYA 1YW9A 2GG3A 5JHUA 2GTXA 5FCFA 1C24A 2P98A 5CE6A 2B3LA 4PV4A 4FLLA 2GU4A 2BH3A 3BIPA 5CDVA 4FLJA 2GGBA 2P99A 4U71A 1YVMA 4FO7A 4U1BA 1WBQA 4RZZA 1R5HA 4IDYA 2Q96A 2GGCA 3L7GA 4FLKA 4U75A 2BHDA 1BN5A
chains in the Genus database with same CATH superfamily
2EVMA 3TB5A 4IKSA 1PV9A 3RORA 4IKUA 1C21A 2GG5A 1XGNA 3OVKA 2V3XA 1QXZA 3D27A 4FLIA 2GZ5A 1C27A 3IU7A 4U6WA 2BHCA 4U76A 3OOOA 4RGZ1 2BN7A 1R58A 3MATA 2V6CA 4U6ZA 5CLSA 2V3ZA 1KP0A 1YW7A 1XGOA 5CNXA 4ZNGA 1W2MA 1XNZA 3FM3A 2EA2A 2NQ6A 2GG0A 1N51A 2ZSGA 4EGEA 4IF7A 3IU9A 4IKTA 4IKRA 3CTZA 5JFRA 3MR1A 2OAZA 2BWXA 1CHMA 2P9AA 3S6BA 4FKCA 2EA4A 2Q94A 2EVOA 4OOKA 2Q95A 5FCHA 1WL9A 4A6WA 4QR8A 5E2CA 2BWVA 4U6EA 3Q6DA 4U69A 5CDLA 1XGMA 4S00A 1A16A 1R5GA 1KQ9A 4S2TP 2Q8KA 3CB5A 1BOAA 3FMQA 4IECA 1WN1A 1MATA 5D6FA 2B3HA 2B3KA 1WY2A 1YJ3A 3O5VA 3PEBA 4ZWPA 5CIKA 2BWYA 1WLRA 5E5BA 1QXYA 2NQ7A 3MX6A 2BWUA 4U6CA 3PKCA 3BITA 4KM3A 4PNCA 5JI6A 2V3YA 5D6EA 2GG9A 1Y1NA 1YW8A 4S01A 2GA2A 4FUKA 3TAVA 4HXXA 2HOWA 4B28A 2EVCA 4A6VA 3BIQA 4S2RP 4ZWUA 1KQ0A 2GG8A 2Q93A 4U73A 3FMRA 3PKBA 2BWSA 4FO8A 3PKDA 2GU5A 4IPAA 3IG4A 4MATA 2BHBA 4IU6A 1WL6A 2GG2A 4RZYA 3PKAA 4Z7MA 2BWTA 3QOCA 1WKMA 2IW2A 2GG7A 3RVAA 4JUQA 3PN9A 4U70A 3IU8A 1C22A 3L24A 1B59A 4U6JA 1M35A 1C23A 1W7VA 2G6PA 1B6AA 2BB7A 3PKEA 4R60A 5CDEA 2ADUA 3IL0A 2MATA 2BWWA 3CB6A 1XGSA 2GU7A 3I7MA 2Q92A 1O0XA 2BHAA 2DFIA 1QXWA 2OKNA 4ZWOA 2GU6A 1JAWA 1QZYA 1YW9A 2GG3A 5JHUA 2GTXA 5FCFA 1C24A 2P98A 5CE6A 2B3LA 4PV4A 4FLLA 2GU4A 2BH3A 3BIPA 5CDVA 4FLJA 2GGBA 2P99A 4U71A 1YVMA 4FO7A 4U1BA 1WBQA 4RZZA 1R5HA 4IDYA 2Q96A 2GGCA 3L7GA 4FLKA 4U75A 2BHDA 1BN5A
chains in the Genus database with same CATH topology
2EVMA 3TB5A 4IKSA 1PV9A 3RORA 4IKUA 1C21A 2GG5A 1XGNA 3OVKA 2V3XA 1QXZA 3D27A 4FLIA 2GZ5A 1C27A 3IU7A 4U6WA 2BHCA 4U76A 3OOOA 4RGZ1 2BN7A 1R58A 3MATA 2V6CA 4U6ZA 5CLSA 2V3ZA 1KP0A 1YW7A 1XGOA 5CNXA 4ZNGA 1W2MA 1XNZA 3FM3A 2EA2A 2NQ6A 2GG0A 1N51A 2ZSGA 4EGEA 4IF7A 3IU9A 4IKTA 4IKRA 3CTZA 5JFRA 3MR1A 2OAZA 2BWXA 1CHMA 2P9AA 3S6BA 4FKCA 2EA4A 2Q94A 2EVOA 4OOKA 2Q95A 5FCHA 1WL9A 4A6WA 4QR8A 5E2CA 2BWVA 4U6EA 3Q6DA 4U69A 5CDLA 1XGMA 4S00A 1A16A 1R5GA 1KQ9A 4S2TP 2Q8KA 3CB5A 1BOAA 3FMQA 4IECA 1WN1A 1MATA 5D6FA 2B3HA 2B3KA 1WY2A 1YJ3A 3O5VA 3PEBA 4ZWPA 5CIKA 2BWYA 1WLRA 5E5BA 1QXYA 2NQ7A 3MX6A 2BWUA 4U6CA 3PKCA 3BITA 4KM3A 4PNCA 5JI6A 2V3YA 5D6EA 2GG9A 1Y1NA 1YW8A 4S01A 2GA2A 4FUKA 3TAVA 4HXXA 2HOWA 4B28A 2EVCA 4A6VA 3BIQA 4S2RP 4ZWUA 1KQ0A 2GG8A 2Q93A 4U73A 3FMRA 3PKBA 2BWSA 4FO8A 3PKDA 2GU5A 4IPAA 3IG4A 4MATA 2BHBA 4IU6A 1WL6A 2GG2A 4RZYA 3PKAA 4Z7MA 2BWTA 3QOCA 1WKMA 2IW2A 2GG7A 3RVAA 4JUQA 3PN9A 4U70A 3IU8A 1C22A 3L24A 1B59A 4U6JA 1M35A 1C23A 1W7VA 2G6PA 1B6AA 2BB7A 3PKEA 4R60A 5CDEA 2ADUA 3IL0A 2MATA 2BWWA 3CB6A 1XGSA 2GU7A 3I7MA 2Q92A 1O0XA 2BHAA 2DFIA 1QXWA 2OKNA 4ZWOA 2GU6A 1JAWA 1QZYA 1YW9A 2GG3A 5JHUA 2GTXA 5FCFA 1C24A 2P98A 5CE6A 2B3LA 4PV4A 4FLLA 2GU4A 2BH3A 3BIPA 5CDVA 4FLJA 2GGBA 2P99A 4U71A 1YVMA 4FO7A 4U1BA 1WBQA 4RZZA 1R5HA 4IDYA 2Q96A 2GGCA 3L7GA 4FLKA 4U75A 2BHDA 1BN5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EVM A;  3TB5 A;  4IKS A;  1PV9 A;  3ROR A;  4IKU A;  1C21 A;  2GG5 A;  1XGN A;  3OVK A;  2V3X A;  1QXZ A;  3D27 A;  4FLI A;  2GZ5 A;  1C27 A;  3IU7 A;  4U6W A;  2BHC A;  4U76 A;  3OOO A;  4RGZ 1;  2BN7 A;  1R58 A;  3MAT A;  2V6C A;  4U6Z A;  5CLS A;  2V3Z A;  1KP0 A;  1YW7 A;  1XGO A;  5CNX A;  4ZNG A;  1W2M A;  1XNZ A;  3FM3 A;  2EA2 A;  2NQ6 A;  2GG0 A;  1N51 A;  2ZSG A;  4EGE A;  4IF7 A;  3IU9 A;  4IKT A;  4IKR A;  3CTZ A;  5JFR A;  3MR1 A;  2OAZ A;  2BWX A;  1CHM A;  2P9A A;  3S6B A;  4FKC A;  2EA4 A;  2Q94 A;  2EVO A;  4OOK A;  2Q95 A;  5FCH A;  1WL9 A;  4A6W A;  4QR8 A;  5E2C A;  2BWV A;  4U6E A;  3Q6D A;  4U69 A;  5CDL A;  1XGM A;  4S00 A;  1A16 A;  1R5G A;  1KQ9 A;  4S2T P;  2Q8K A;  3CB5 A;  1BOA A;  3FMQ A;  4IEC A;  1WN1 A;  1MAT A;  5D6F A;  2B3H A;  2B3K A;  1WY2 A;  1YJ3 A;  3O5V A;  3PEB A;  4ZWP A;  5CIK A;  2BWY A;  1WLR A;  5E5B A;  1QXY A;  2NQ7 A;  3MX6 A;  2BWU A;  4U6C A;  3PKC A;  3BIT A;  4KM3 A;  4PNC A;  5JI6 A;  2V3Y A;  5D6E A;  2GG9 A;  1Y1N A;  1YW8 A;  4S01 A;  2GA2 A;  4FUK A;  3TAV A;  4HXX A;  2HOW A;  4B28 A;  2EVC A;  4A6V A;  3BIQ A;  4S2R P;  4ZWU A;  1KQ0 A;  2GG8 A;  2Q93 A;  4U73 A;  3FMR A;  3PKB A;  2BWS A;  4FO8 A;  3PKD A;  2GU5 A;  4IPA A;  3IG4 A;  4MAT A;  2BHB A;  4IU6 A;  1WL6 A;  2GG2 A;  4RZY A;  3PKA A;  4Z7M A;  2BWT A;  3QOC A;  1WKM A;  2IW2 A;  2GG7 A;  3RVA A;  4JUQ A;  3PN9 A;  4U70 A;  3IU8 A;  1C22 A;  3L24 A;  1B59 A;  4U6J A;  1M35 A;  1C23 A;  1W7V A;  2G6P A;  1B6A A;  2BB7 A;  3PKE A;  4R60 A;  5CDE A;  2ADU A;  3IL0 A;  2MAT A;  2BWW A;  3CB6 A;  1XGS A;  2GU7 A;  3I7M A;  2Q92 A;  1O0X A;  2BHA A;  2DFI A;  1QXW A;  2OKN A;  4ZWO A;  2GU6 A;  1JAW A;  1QZY A;  1YW9 A;  2GG3 A;  5JHU A;  2GTX A;  5FCF A;  1C24 A;  2P98 A;  5CE6 A;  2B3L A;  4PV4 A;  4FLL A;  2GU4 A;  2BH3 A;  3BIP A;  5CDV A;  4FLJ A;  2GGB A;  2P99 A;  4U71 A;  1YVM A;  4FO7 A;  4U1B A;  1WBQ A;  4RZZ A;  1R5H A;  4IDY A;  2Q96 A;  2GGC A;  3L7G A;  4FLK A;  4U75 A;  2BHD A;  1BN5 A; 
#chains in the Genus database with same CATH topology
 2EVM A;  3TB5 A;  4IKS A;  1PV9 A;  3ROR A;  4IKU A;  1C21 A;  2GG5 A;  1XGN A;  3OVK A;  2V3X A;  1QXZ A;  3D27 A;  4FLI A;  2GZ5 A;  1C27 A;  3IU7 A;  4U6W A;  2BHC A;  4U76 A;  3OOO A;  4RGZ 1;  2BN7 A;  1R58 A;  3MAT A;  2V6C A;  4U6Z A;  5CLS A;  2V3Z A;  1KP0 A;  1YW7 A;  1XGO A;  5CNX A;  4ZNG A;  1W2M A;  1XNZ A;  3FM3 A;  2EA2 A;  2NQ6 A;  2GG0 A;  1N51 A;  2ZSG A;  4EGE A;  4IF7 A;  3IU9 A;  4IKT A;  4IKR A;  3CTZ A;  5JFR A;  3MR1 A;  2OAZ A;  2BWX A;  1CHM A;  2P9A A;  3S6B A;  4FKC A;  2EA4 A;  2Q94 A;  2EVO A;  4OOK A;  2Q95 A;  5FCH A;  1WL9 A;  4A6W A;  4QR8 A;  5E2C A;  2BWV A;  4U6E A;  3Q6D A;  4U69 A;  5CDL A;  1XGM A;  4S00 A;  1A16 A;  1R5G A;  1KQ9 A;  4S2T P;  2Q8K A;  3CB5 A;  1BOA A;  3FMQ A;  4IEC A;  1WN1 A;  1MAT A;  5D6F A;  2B3H A;  2B3K A;  1WY2 A;  1YJ3 A;  3O5V A;  3PEB A;  4ZWP A;  5CIK A;  2BWY A;  1WLR A;  5E5B A;  1QXY A;  2NQ7 A;  3MX6 A;  2BWU A;  4U6C A;  3PKC A;  3BIT A;  4KM3 A;  4PNC A;  5JI6 A;  2V3Y A;  5D6E A;  2GG9 A;  1Y1N A;  1YW8 A;  4S01 A;  2GA2 A;  4FUK A;  3TAV A;  4HXX A;  2HOW A;  4B28 A;  2EVC A;  4A6V A;  3BIQ A;  4S2R P;  4ZWU A;  1KQ0 A;  2GG8 A;  2Q93 A;  4U73 A;  3FMR A;  3PKB A;  2BWS A;  4FO8 A;  3PKD A;  2GU5 A;  4IPA A;  3IG4 A;  4MAT A;  2BHB A;  4IU6 A;  1WL6 A;  2GG2 A;  4RZY A;  3PKA A;  4Z7M A;  2BWT A;  3QOC A;  1WKM A;  2IW2 A;  2GG7 A;  3RVA A;  4JUQ A;  3PN9 A;  4U70 A;  3IU8 A;  1C22 A;  3L24 A;  1B59 A;  4U6J A;  1M35 A;  1C23 A;  1W7V A;  2G6P A;  1B6A A;  2BB7 A;  3PKE A;  4R60 A;  5CDE A;  2ADU A;  3IL0 A;  2MAT A;  2BWW A;  3CB6 A;  1XGS A;  2GU7 A;  3I7M A;  2Q92 A;  1O0X A;  2BHA A;  2DFI A;  1QXW A;  2OKN A;  4ZWO A;  2GU6 A;  1JAW A;  1QZY A;  1YW9 A;  2GG3 A;  5JHU A;  2GTX A;  5FCF A;  1C24 A;  2P98 A;  5CE6 A;  2B3L A;  4PV4 A;  4FLL A;  2GU4 A;  2BH3 A;  3BIP A;  5CDV A;  4FLJ A;  2GGB A;  2P99 A;  4U71 A;  1YVM A;  4FO7 A;  4U1B A;  1WBQ A;  4RZZ A;  1R5H A;  4IDY A;  2Q96 A;  2GGC A;  3L7G A;  4FLK A;  4U75 A;  2BHD A;  1BN5 A; 
#chains in the Genus database with same CATH homology
 2EVM A;  3TB5 A;  4IKS A;  1PV9 A;  3ROR A;  4IKU A;  1C21 A;  2GG5 A;  1XGN A;  3OVK A;  2V3X A;  1QXZ A;  3D27 A;  4FLI A;  2GZ5 A;  1C27 A;  3IU7 A;  4U6W A;  2BHC A;  4U76 A;  3OOO A;  4RGZ 1;  2BN7 A;  1R58 A;  3MAT A;  2V6C A;  4U6Z A;  5CLS A;  2V3Z A;  1KP0 A;  1YW7 A;  1XGO A;  5CNX A;  4ZNG A;  1W2M A;  1XNZ A;  3FM3 A;  2EA2 A;  2NQ6 A;  2GG0 A;  1N51 A;  2ZSG A;  4EGE A;  4IF7 A;  3IU9 A;  4IKT A;  4IKR A;  3CTZ A;  5JFR A;  3MR1 A;  2OAZ A;  2BWX A;  1CHM A;  2P9A A;  3S6B A;  4FKC A;  2EA4 A;  2Q94 A;  2EVO A;  4OOK A;  2Q95 A;  5FCH A;  1WL9 A;  4A6W A;  4QR8 A;  5E2C A;  2BWV A;  4U6E A;  3Q6D A;  4U69 A;  5CDL A;  1XGM A;  4S00 A;  1A16 A;  1R5G A;  1KQ9 A;  4S2T P;  2Q8K A;  3CB5 A;  1BOA A;  3FMQ A;  4IEC A;  1WN1 A;  1MAT A;  5D6F A;  2B3H A;  2B3K A;  1WY2 A;  1YJ3 A;  3O5V A;  3PEB A;  4ZWP A;  5CIK A;  2BWY A;  1WLR A;  5E5B A;  1QXY A;  2NQ7 A;  3MX6 A;  2BWU A;  4U6C A;  3PKC A;  3BIT A;  4KM3 A;  4PNC A;  5JI6 A;  2V3Y A;  5D6E A;  2GG9 A;  1Y1N A;  1YW8 A;  4S01 A;  2GA2 A;  4FUK A;  3TAV A;  4HXX A;  2HOW A;  4B28 A;  2EVC A;  4A6V A;  3BIQ A;  4S2R P;  4ZWU A;  1KQ0 A;  2GG8 A;  2Q93 A;  4U73 A;  3FMR A;  3PKB A;  2BWS A;  4FO8 A;  3PKD A;  2GU5 A;  4IPA A;  3IG4 A;  4MAT A;  2BHB A;  4IU6 A;  1WL6 A;  2GG2 A;  4RZY A;  3PKA A;  4Z7M A;  2BWT A;  3QOC A;  1WKM A;  2IW2 A;  2GG7 A;  3RVA A;  4JUQ A;  3PN9 A;  4U70 A;  3IU8 A;  1C22 A;  3L24 A;  1B59 A;  4U6J A;  1M35 A;  1C23 A;  1W7V A;  2G6P A;  1B6A A;  2BB7 A;  3PKE A;  4R60 A;  5CDE A;  2ADU A;  3IL0 A;  2MAT A;  2BWW A;  3CB6 A;  1XGS A;  2GU7 A;  3I7M A;  2Q92 A;  1O0X A;  2BHA A;  2DFI A;  1QXW A;  2OKN A;  4ZWO A;  2GU6 A;  1JAW A;  1QZY A;  1YW9 A;  2GG3 A;  5JHU A;  2GTX A;  5FCF A;  1C24 A;  2P98 A;  5CE6 A;  2B3L A;  4PV4 A;  4FLL A;  2GU4 A;  2BH3 A;  3BIP A;  5CDV A;  4FLJ A;  2GGB A;  2P99 A;  4U71 A;  1YVM A;  4FO7 A;  4U1B A;  1WBQ A;  4RZZ A;  1R5H A;  4IDY A;  2Q96 A;  2GGC A;  3L7G A;  4FLK A;  4U75 A;  2BHD A;  1BN5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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