5CDVA

Proline dipeptidase from deinococcus radiodurans r1
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
349
structure length
349
Chain Sequence
SSKMDQLRPVLGRAGVDALWVSAPANVRWLSGFTSAEDGKVLVSPDGATLYTDARYTVQAQEESSLPQYIARPPATYEHAADTVRGLRVGFEAESLTVAELEDLRQAWPNSTLVALRGTLGGLRAVKTPEEIGAIRAAQDLADRVYTEVRPMIRAGVRELDVAVEIETRLRRAGGESAFELIVASGPNGAKPHGHASKRVIEDGDLVTIDMGARLGGYNSDMTRTVAVGTPSAEMKRVYDAVLEAEEAAIAAIRPGVRAADLDKLARDLLTRHGLGEAFAHSLGHGVGLEVHEGPGLRGTSQDVLEAGMVITIEPGAYLPGVGGVRIEDLILVTEDGYEVLSHSAKESV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
publication title Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution
rcsb
molecule keywords Proline dipeptidase
total genus 110
structure length 349
sequence length 349
ec nomenclature
pdb deposition date 2015-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdvA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdvA02
3D27A 4IKSA 4FKCA 2BHAA 4EGEA 3PKBA 1JAWA 3BIQA 2GG9A 1KQ0A 5D6FA 2G6PA 3PKCA 4S2TP 2GG2A 4IKRA 4U71A 2V3YA 3CB5A 5E2CA 1C27A 1WKMA 4U6WA 1YJ3A 3IL0A 2GTXA 4HXXA 1PV9A 5FCHA 1WY2A 5CDLA 2ADUA 3BITA 1QXZA 2EVCA 4B28A 4PNCA 1XGSA 1W2MA 2V6CA 4IKTA 4JUQA 5CE6A 3TB5A 1A16A 4OOKA 1WL9A 4IKUA 3RVAA 3QOCA 1C24A 4IECA 2BWTA 4RGZ1 2BB7A 3PKEA 5CIKA 1MATA 2GU4A 3I7MA 4FLIA 4Z7MA 3FM3A 1XGMA 4IF7A 1O0XA 4FLLA 4IU6A 2B3HA 2GG5A 3PKAA 4S01A 5CDEA 3MR1A 3O5VA 1BOAA 4U6CA 1C23A 5CLSA 4U6ZA 4FLKA 4FLJA 4IDYA 2MATA 4U6EA 2GU6A 4A6VA 2BWUA 2BWWA 3IU9A 1CHMA 3RORA 2DFIA 4PV4A 2BWXA 1W7VA 1WN1A 1YW8A 3L24A 3L7GA 1KQ9A 2GGCA 1BN5A 1YW7A 4U73A 1B6AA 4U75A 3Q6DA 4IPAA 2EA2A 2Q93A 2GG0A 3OVKA 2GZ5A 2Q96A 2EA4A 2GU7A 4MATA 3IG4A 2GG8A 1R58A 2Q94A 2V3ZA 1N51A 4U76A 2GG3A 3IU8A 2EVMA 5JI6A 5JFRA 2NQ6A 3OOOA 3MX6A 4R60A 1R5GA 1C22A 1QXWA 2GA2A 4U6JA 1XGOA 1M35A 4RZZA 3PN9A 1YW9A 3FMQA 2B3KA 4FO7A 4A6WA 5FCFA 2GG7A 3S6BA 2BHBA 3PKDA 5JHUA 2Q8KA 2HOWA 2BWYA 3FMRA 1QXYA 4U69A 2ZSGA 3MATA 3PEBA 1B59A 2BWVA 2BN7A 1YVMA 3CTZA 5E5BA 2BWSA 1WBQA 4FUKA 1WL6A 4ZWPA 2GU5A 1WLRA 2OAZA 2GGBA 3BIPA 3TAVA 5CDVA 3IU7A 2BHCA 1R5HA 2BHDA 1Y1NA 2BH3A 4FO8A 5D6EA 4U70A 2V3XA 4S2RP 2EVOA 1KP0A 1C21A 2NQ7A 2IW2A 1XNZA 4QR8A 1XGNA 4KM3A 2P99A 4U1BA 1QZYA 2P98A 2P9AA 4RZYA 4ZNGA 2Q95A 3CB6A 4ZWUA 2B3LA 2Q92A 4ZWOA 2OKNA 4S00A 5CNXA
chains in the Genus database with same CATH superfamily
3D27A 4IKSA 4FKCA 2BHAA 4EGEA 3PKBA 1JAWA 3BIQA 2GG9A 1KQ0A 5D6FA 2G6PA 3PKCA 4S2TP 2GG2A 4IKRA 4U71A 2V3YA 3CB5A 5E2CA 1C27A 1WKMA 4U6WA 1YJ3A 3IL0A 2GTXA 4HXXA 1PV9A 5FCHA 1WY2A 5CDLA 2ADUA 3BITA 1QXZA 2EVCA 4B28A 4PNCA 1XGSA 1W2MA 2V6CA 4IKTA 4JUQA 5CE6A 3TB5A 1A16A 4OOKA 1WL9A 4IKUA 3RVAA 3QOCA 1C24A 4IECA 2BWTA 4RGZ1 2BB7A 3PKEA 5CIKA 1MATA 2GU4A 3I7MA 4FLIA 4Z7MA 3FM3A 1XGMA 4IF7A 1O0XA 4FLLA 4IU6A 2B3HA 2GG5A 3PKAA 4S01A 5CDEA 3MR1A 3O5VA 1BOAA 4U6CA 1C23A 5CLSA 4U6ZA 4FLKA 4FLJA 4IDYA 2MATA 4U6EA 2GU6A 4A6VA 2BWUA 2BWWA 3IU9A 1CHMA 3RORA 2DFIA 4PV4A 2BWXA 1W7VA 1WN1A 1YW8A 3L24A 3L7GA 1KQ9A 2GGCA 1BN5A 1YW7A 4U73A 1B6AA 4U75A 3Q6DA 4IPAA 2EA2A 2Q93A 2GG0A 3OVKA 2GZ5A 2Q96A 2EA4A 2GU7A 4MATA 3IG4A 2GG8A 1R58A 2Q94A 2V3ZA 1N51A 4U76A 2GG3A 3IU8A 2EVMA 5JI6A 5JFRA 2NQ6A 3OOOA 3MX6A 4R60A 1R5GA 1C22A 1QXWA 2GA2A 4U6JA 1XGOA 1M35A 4RZZA 3PN9A 1YW9A 3FMQA 2B3KA 4FO7A 4A6WA 5FCFA 2GG7A 3S6BA 2BHBA 3PKDA 5JHUA 2Q8KA 2HOWA 2BWYA 3FMRA 1QXYA 4U69A 2ZSGA 3MATA 3PEBA 1B59A 2BWVA 2BN7A 1YVMA 3CTZA 5E5BA 2BWSA 1WBQA 4FUKA 1WL6A 4ZWPA 2GU5A 1WLRA 2OAZA 2GGBA 3BIPA 3TAVA 5CDVA 3IU7A 2BHCA 1R5HA 2BHDA 1Y1NA 2BH3A 4FO8A 5D6EA 4U70A 2V3XA 4S2RP 2EVOA 1KP0A 1C21A 2NQ7A 2IW2A 1XNZA 4QR8A 1XGNA 4KM3A 2P99A 4U1BA 1QZYA 2P98A 2P9AA 4RZYA 4ZNGA 2Q95A 3CB6A 4ZWUA 2B3LA 2Q92A 4ZWOA 2OKNA 4S00A 5CNXA
chains in the Genus database with same CATH topology
3D27A 4IKSA 4FKCA 2BHAA 4EGEA 3PKBA 1JAWA 3BIQA 2GG9A 1KQ0A 5D6FA 2G6PA 3PKCA 4S2TP 2GG2A 4IKRA 4U71A 2V3YA 3CB5A 5E2CA 1C27A 1WKMA 4U6WA 1YJ3A 3IL0A 2GTXA 4HXXA 1PV9A 5FCHA 1WY2A 5CDLA 2ADUA 3BITA 1QXZA 2EVCA 4B28A 4PNCA 1XGSA 1W2MA 2V6CA 4IKTA 4JUQA 5CE6A 3TB5A 1A16A 4OOKA 1WL9A 4IKUA 3RVAA 3QOCA 1C24A 4IECA 2BWTA 4RGZ1 2BB7A 3PKEA 5CIKA 1MATA 2GU4A 3I7MA 4FLIA 4Z7MA 3FM3A 1XGMA 4IF7A 1O0XA 4FLLA 4IU6A 2B3HA 2GG5A 3PKAA 4S01A 5CDEA 3MR1A 3O5VA 1BOAA 4U6CA 1C23A 5CLSA 4U6ZA 4FLKA 4FLJA 4IDYA 2MATA 4U6EA 2GU6A 4A6VA 2BWUA 2BWWA 3IU9A 1CHMA 3RORA 2DFIA 4PV4A 2BWXA 1W7VA 1WN1A 1YW8A 3L24A 3L7GA 1KQ9A 2GGCA 1BN5A 1YW7A 4U73A 1B6AA 4U75A 3Q6DA 4IPAA 2EA2A 2Q93A 2GG0A 3OVKA 2GZ5A 2Q96A 2EA4A 2GU7A 4MATA 3IG4A 2GG8A 1R58A 2Q94A 2V3ZA 1N51A 4U76A 2GG3A 3IU8A 2EVMA 5JI6A 5JFRA 2NQ6A 3OOOA 3MX6A 4R60A 1R5GA 1C22A 1QXWA 2GA2A 4U6JA 1XGOA 1M35A 4RZZA 3PN9A 1YW9A 3FMQA 2B3KA 4FO7A 4A6WA 5FCFA 2GG7A 3S6BA 2BHBA 3PKDA 5JHUA 2Q8KA 2HOWA 2BWYA 3FMRA 1QXYA 4U69A 2ZSGA 3MATA 3PEBA 1B59A 2BWVA 2BN7A 1YVMA 3CTZA 5E5BA 2BWSA 1WBQA 4FUKA 1WL6A 4ZWPA 2GU5A 1WLRA 2OAZA 2GGBA 3BIPA 3TAVA 5CDVA 3IU7A 2BHCA 1R5HA 2BHDA 1Y1NA 2BH3A 4FO8A 5D6EA 4U70A 2V3XA 4S2RP 2EVOA 1KP0A 1C21A 2NQ7A 2IW2A 1XNZA 4QR8A 1XGNA 4KM3A 2P99A 4U1BA 1QZYA 2P98A 2P9AA 4RZYA 4ZNGA 2Q95A 3CB6A 4ZWUA 2B3LA 2Q92A 4ZWOA 2OKNA 4S00A 5CNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D27 A;  4IKS A;  4FKC A;  2BHA A;  4EGE A;  3PKB A;  1JAW A;  3BIQ A;  2GG9 A;  1KQ0 A;  5D6F A;  2G6P A;  3PKC A;  4S2T P;  2GG2 A;  4IKR A;  4U71 A;  2V3Y A;  3CB5 A;  5E2C A;  1C27 A;  1WKM A;  4U6W A;  1YJ3 A;  3IL0 A;  2GTX A;  4HXX A;  1PV9 A;  5FCH A;  1WY2 A;  5CDL A;  2ADU A;  3BIT A;  1QXZ A;  2EVC A;  4B28 A;  4PNC A;  1XGS A;  1W2M A;  2V6C A;  4IKT A;  4JUQ A;  5CE6 A;  3TB5 A;  1A16 A;  4OOK A;  1WL9 A;  4IKU A;  3RVA A;  3QOC A;  1C24 A;  4IEC A;  2BWT A;  4RGZ 1;  2BB7 A;  3PKE A;  5CIK A;  1MAT A;  2GU4 A;  3I7M A;  4FLI A;  4Z7M A;  3FM3 A;  1XGM A;  4IF7 A;  1O0X A;  4FLL A;  4IU6 A;  2B3H A;  2GG5 A;  3PKA A;  4S01 A;  5CDE A;  3MR1 A;  3O5V A;  1BOA A;  4U6C A;  1C23 A;  5CLS A;  4U6Z A;  4FLK A;  4FLJ A;  4IDY A;  2MAT A;  4U6E A;  2GU6 A;  4A6V A;  2BWU A;  2BWW A;  3IU9 A;  1CHM A;  3ROR A;  2DFI A;  4PV4 A;  2BWX A;  1W7V A;  1WN1 A;  1YW8 A;  3L24 A;  3L7G A;  1KQ9 A;  2GGC A;  1BN5 A;  1YW7 A;  4U73 A;  1B6A A;  4U75 A;  3Q6D A;  4IPA A;  2EA2 A;  2Q93 A;  2GG0 A;  3OVK A;  2GZ5 A;  2Q96 A;  2EA4 A;  2GU7 A;  4MAT A;  3IG4 A;  2GG8 A;  1R58 A;  2Q94 A;  2V3Z A;  1N51 A;  4U76 A;  2GG3 A;  3IU8 A;  2EVM A;  5JI6 A;  5JFR A;  2NQ6 A;  3OOO A;  3MX6 A;  4R60 A;  1R5G A;  1C22 A;  1QXW A;  2GA2 A;  4U6J A;  1XGO A;  1M35 A;  4RZZ A;  3PN9 A;  1YW9 A;  3FMQ A;  2B3K A;  4FO7 A;  4A6W A;  5FCF A;  2GG7 A;  3S6B A;  2BHB A;  3PKD A;  5JHU A;  2Q8K A;  2HOW A;  2BWY A;  3FMR A;  1QXY A;  4U69 A;  2ZSG A;  3MAT A;  3PEB A;  1B59 A;  2BWV A;  2BN7 A;  1YVM A;  3CTZ A;  5E5B A;  2BWS A;  1WBQ A;  4FUK A;  1WL6 A;  4ZWP A;  2GU5 A;  1WLR A;  2OAZ A;  2GGB A;  3BIP A;  3TAV A;  5CDV A;  3IU7 A;  2BHC A;  1R5H A;  2BHD A;  1Y1N A;  2BH3 A;  4FO8 A;  5D6E A;  4U70 A;  2V3X A;  4S2R P;  2EVO A;  1KP0 A;  1C21 A;  2NQ7 A;  2IW2 A;  1XNZ A;  4QR8 A;  1XGN A;  4KM3 A;  2P99 A;  4U1B A;  1QZY A;  2P98 A;  2P9A A;  4RZY A;  4ZNG A;  2Q95 A;  3CB6 A;  4ZWU A;  2B3L A;  2Q92 A;  4ZWO A;  2OKN A;  4S00 A;  5CNX A; 
#chains in the Genus database with same CATH topology
 3D27 A;  4IKS A;  4FKC A;  2BHA A;  4EGE A;  3PKB A;  1JAW A;  3BIQ A;  2GG9 A;  1KQ0 A;  5D6F A;  2G6P A;  3PKC A;  4S2T P;  2GG2 A;  4IKR A;  4U71 A;  2V3Y A;  3CB5 A;  5E2C A;  1C27 A;  1WKM A;  4U6W A;  1YJ3 A;  3IL0 A;  2GTX A;  4HXX A;  1PV9 A;  5FCH A;  1WY2 A;  5CDL A;  2ADU A;  3BIT A;  1QXZ A;  2EVC A;  4B28 A;  4PNC A;  1XGS A;  1W2M A;  2V6C A;  4IKT A;  4JUQ A;  5CE6 A;  3TB5 A;  1A16 A;  4OOK A;  1WL9 A;  4IKU A;  3RVA A;  3QOC A;  1C24 A;  4IEC A;  2BWT A;  4RGZ 1;  2BB7 A;  3PKE A;  5CIK A;  1MAT A;  2GU4 A;  3I7M A;  4FLI A;  4Z7M A;  3FM3 A;  1XGM A;  4IF7 A;  1O0X A;  4FLL A;  4IU6 A;  2B3H A;  2GG5 A;  3PKA A;  4S01 A;  5CDE A;  3MR1 A;  3O5V A;  1BOA A;  4U6C A;  1C23 A;  5CLS A;  4U6Z A;  4FLK A;  4FLJ A;  4IDY A;  2MAT A;  4U6E A;  2GU6 A;  4A6V A;  2BWU A;  2BWW A;  3IU9 A;  1CHM A;  3ROR A;  2DFI A;  4PV4 A;  2BWX A;  1W7V A;  1WN1 A;  1YW8 A;  3L24 A;  3L7G A;  1KQ9 A;  2GGC A;  1BN5 A;  1YW7 A;  4U73 A;  1B6A A;  4U75 A;  3Q6D A;  4IPA A;  2EA2 A;  2Q93 A;  2GG0 A;  3OVK A;  2GZ5 A;  2Q96 A;  2EA4 A;  2GU7 A;  4MAT A;  3IG4 A;  2GG8 A;  1R58 A;  2Q94 A;  2V3Z A;  1N51 A;  4U76 A;  2GG3 A;  3IU8 A;  2EVM A;  5JI6 A;  5JFR A;  2NQ6 A;  3OOO A;  3MX6 A;  4R60 A;  1R5G A;  1C22 A;  1QXW A;  2GA2 A;  4U6J A;  1XGO A;  1M35 A;  4RZZ A;  3PN9 A;  1YW9 A;  3FMQ A;  2B3K A;  4FO7 A;  4A6W A;  5FCF A;  2GG7 A;  3S6B A;  2BHB A;  3PKD A;  5JHU A;  2Q8K A;  2HOW A;  2BWY A;  3FMR A;  1QXY A;  4U69 A;  2ZSG A;  3MAT A;  3PEB A;  1B59 A;  2BWV A;  2BN7 A;  1YVM A;  3CTZ A;  5E5B A;  2BWS A;  1WBQ A;  4FUK A;  1WL6 A;  4ZWP A;  2GU5 A;  1WLR A;  2OAZ A;  2GGB A;  3BIP A;  3TAV A;  5CDV A;  3IU7 A;  2BHC A;  1R5H A;  2BHD A;  1Y1N A;  2BH3 A;  4FO8 A;  5D6E A;  4U70 A;  2V3X A;  4S2R P;  2EVO A;  1KP0 A;  1C21 A;  2NQ7 A;  2IW2 A;  1XNZ A;  4QR8 A;  1XGN A;  4KM3 A;  2P99 A;  4U1B A;  1QZY A;  2P98 A;  2P9A A;  4RZY A;  4ZNG A;  2Q95 A;  3CB6 A;  4ZWU A;  2B3L A;  2Q92 A;  4ZWO A;  2OKN A;  4S00 A;  5CNX A; 
#chains in the Genus database with same CATH homology
 3D27 A;  4IKS A;  4FKC A;  2BHA A;  4EGE A;  3PKB A;  1JAW A;  3BIQ A;  2GG9 A;  1KQ0 A;  5D6F A;  2G6P A;  3PKC A;  4S2T P;  2GG2 A;  4IKR A;  4U71 A;  2V3Y A;  3CB5 A;  5E2C A;  1C27 A;  1WKM A;  4U6W A;  1YJ3 A;  3IL0 A;  2GTX A;  4HXX A;  1PV9 A;  5FCH A;  1WY2 A;  5CDL A;  2ADU A;  3BIT A;  1QXZ A;  2EVC A;  4B28 A;  4PNC A;  1XGS A;  1W2M A;  2V6C A;  4IKT A;  4JUQ A;  5CE6 A;  3TB5 A;  1A16 A;  4OOK A;  1WL9 A;  4IKU A;  3RVA A;  3QOC A;  1C24 A;  4IEC A;  2BWT A;  4RGZ 1;  2BB7 A;  3PKE A;  5CIK A;  1MAT A;  2GU4 A;  3I7M A;  4FLI A;  4Z7M A;  3FM3 A;  1XGM A;  4IF7 A;  1O0X A;  4FLL A;  4IU6 A;  2B3H A;  2GG5 A;  3PKA A;  4S01 A;  5CDE A;  3MR1 A;  3O5V A;  1BOA A;  4U6C A;  1C23 A;  5CLS A;  4U6Z A;  4FLK A;  4FLJ A;  4IDY A;  2MAT A;  4U6E A;  2GU6 A;  4A6V A;  2BWU A;  2BWW A;  3IU9 A;  1CHM A;  3ROR A;  2DFI A;  4PV4 A;  2BWX A;  1W7V A;  1WN1 A;  1YW8 A;  3L24 A;  3L7G A;  1KQ9 A;  2GGC A;  1BN5 A;  1YW7 A;  4U73 A;  1B6A A;  4U75 A;  3Q6D A;  4IPA A;  2EA2 A;  2Q93 A;  2GG0 A;  3OVK A;  2GZ5 A;  2Q96 A;  2EA4 A;  2GU7 A;  4MAT A;  3IG4 A;  2GG8 A;  1R58 A;  2Q94 A;  2V3Z A;  1N51 A;  4U76 A;  2GG3 A;  3IU8 A;  2EVM A;  5JI6 A;  5JFR A;  2NQ6 A;  3OOO A;  3MX6 A;  4R60 A;  1R5G A;  1C22 A;  1QXW A;  2GA2 A;  4U6J A;  1XGO A;  1M35 A;  4RZZ A;  3PN9 A;  1YW9 A;  3FMQ A;  2B3K A;  4FO7 A;  4A6W A;  5FCF A;  2GG7 A;  3S6B A;  2BHB A;  3PKD A;  5JHU A;  2Q8K A;  2HOW A;  2BWY A;  3FMR A;  1QXY A;  4U69 A;  2ZSG A;  3MAT A;  3PEB A;  1B59 A;  2BWV A;  2BN7 A;  1YVM A;  3CTZ A;  5E5B A;  2BWS A;  1WBQ A;  4FUK A;  1WL6 A;  4ZWP A;  2GU5 A;  1WLR A;  2OAZ A;  2GGB A;  3BIP A;  3TAV A;  5CDV A;  3IU7 A;  2BHC A;  1R5H A;  2BHD A;  1Y1N A;  2BH3 A;  4FO8 A;  5D6E A;  4U70 A;  2V3X A;  4S2R P;  2EVO A;  1KP0 A;  1C21 A;  2NQ7 A;  2IW2 A;  1XNZ A;  4QR8 A;  1XGN A;  4KM3 A;  2P99 A;  4U1B A;  1QZY A;  2P98 A;  2P9A A;  4RZY A;  4ZNG A;  2Q95 A;  3CB6 A;  4ZWU A;  2B3L A;  2Q92 A;  4ZWO A;  2OKN A;  4S00 A;  5CNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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