5CDVA

Proline dipeptidase from deinococcus radiodurans r1
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
349
structure length
349
Chain Sequence
SSKMDQLRPVLGRAGVDALWVSAPANVRWLSGFTSAEDGKVLVSPDGATLYTDARYTVQAQEESSLPQYIARPPATYEHAADTVRGLRVGFEAESLTVAELEDLRQAWPNSTLVALRGTLGGLRAVKTPEEIGAIRAAQDLADRVYTEVRPMIRAGVRELDVAVEIETRLRRAGGESAFELIVASGPNGAKPHGHASKRVIEDGDLVTIDMGARLGGYNSDMTRTVAVGTPSAEMKRVYDAVLEAEEAAIAAIRPGVRAADLDKLARDLLTRHGLGEAFAHSLGHGVGLEVHEGPGLRGTSQDVLEAGMVITIEPGAYLPGVGGVRIEDLILVTEDGYEVLSHSAKESV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution
rcsb
source organism Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
molecule tags Hydrolase
total genus 110
structure length 349
sequence length 349
ec nomenclature
pdb deposition date 2015-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdvA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdvA02
5CIKA 2BN7A 3BITA 3MATA 4IU6A 4ZWUA 4FUKA 4U75A 4IPAA 1B6AA 2GGBA 2GU5A 2NQ7A 3L7GA 1WLRA 4HXXA 4RGZ1 4FLKA 4IKSA 2BB7A 2NQ6A 3PKAA 4U6JA 1WKMA 2EVOA 1WL6A 2BHDA 5JI6A 1XGSA 2V3ZA 1C23A 1BN5A 3CTZA 4KM3A 1XNZA 3IU8A 4FO8A 4QR8A 2B3KA 3O5VA 2Q95A 3S6BA 4Z7MA 2EVMA 2GA2A 4JUQA 2B3LA 2GU7A 3IL0A 4S2TP 2BWTA 3PN9A 3FMRA 1C24A 4U69A 4S00A 1BOAA 1WY2A 1R5GA 3D27A 3TAVA 5CNXA 5CE6A 1KQ0A 2Q92A 4U6CA 1YW9A 1YW7A 5CLSA 3MR1A 5D6FA 2Q93A 1WN1A 3FM3A 5JFRA 5E5BA 4S2RP 2V6CA 4IKTA 1C21A 2MATA 4U6ZA 4U73A 3Q6DA 4ZWOA 5D6EA 2Q94A 5FCFA 2BHBA 4B28A 1XGNA 5E2CA 1YJ3A 2BWUA 4IKUA 2GG0A 1KP0A 5JHUA 1QXZA 4U6WA 2GGCA 3L24A 4IF7A 1WBQA 2GG3A 2BWWA 2P9AA 4ZNGA 1C22A 4FLLA 3PKBA 2P98A 5CDEA 2DFIA 1QXWA 2BWSA 1W2MA 4IECA 3OOOA 5CDLA 1B59A 1MATA 3IU7A 4U71A 1A16A 3QOCA 2BH3A 2ADUA 2GU4A 1YW8A 4OOKA 4R60A 4U70A 1YVMA 1N51A 1XGOA 4PNCA 1QXYA 2BHAA 2GG8A 2GG2A 3CB6A 3RVAA 2GZ5A 1XGMA 1O0XA 2BWYA 2BWXA 2G6PA 4U1BA 1R58A 1QZYA 2GTXA 4PV4A 3IU9A 3OVKA 2OKNA 4U6EA 4RZYA 2EA2A 5FCHA 4S01A 4A6WA 3PKCA 4FKCA 1Y1NA 2GG5A 2OAZA 2GG9A 1JAWA 2EA4A 5CDVA 3I7MA 4FO7A 2B3HA 2GG7A 4U76A 4A6VA 1PV9A 3PEBA 2EVCA 2HOWA 3TB5A 2V3XA 3BIQA 3MX6A 2BHCA 2Q96A 3PKEA 1R5HA 4MATA 2Q8KA 4EGEA 1M35A 2GU6A 4IKRA 4FLIA 1WL9A 4RZZA 2ZSGA 2V3YA 1KQ9A 1W7VA 3PKDA 4FLJA 3IG4A 3FMQA 2IW2A 2P99A 2BWVA 3BIPA 1C27A 3CB5A 4ZWPA 4IDYA 3RORA 1CHMA
chains in the Genus database with same CATH superfamily
5CIKA 2BN7A 3BITA 3MATA 4IU6A 4ZWUA 4FUKA 4U75A 4IPAA 1B6AA 2GGBA 2GU5A 2NQ7A 3L7GA 1WLRA 4HXXA 4RGZ1 4FLKA 4IKSA 2BB7A 2NQ6A 3PKAA 4U6JA 1WKMA 2EVOA 1WL6A 2BHDA 5JI6A 1XGSA 2V3ZA 1C23A 1BN5A 3CTZA 4KM3A 1XNZA 3IU8A 4FO8A 4QR8A 2B3KA 3O5VA 2Q95A 3S6BA 4Z7MA 2EVMA 2GA2A 4JUQA 2B3LA 2GU7A 3IL0A 4S2TP 2BWTA 3PN9A 3FMRA 1C24A 4U69A 4S00A 1BOAA 1WY2A 1R5GA 3D27A 3TAVA 5CNXA 5CE6A 1KQ0A 2Q92A 4U6CA 1YW9A 1YW7A 5CLSA 3MR1A 5D6FA 2Q93A 1WN1A 3FM3A 5JFRA 5E5BA 4S2RP 2V6CA 4IKTA 1C21A 2MATA 4U6ZA 4U73A 3Q6DA 4ZWOA 5D6EA 2Q94A 5FCFA 2BHBA 4B28A 1XGNA 5E2CA 1YJ3A 2BWUA 4IKUA 2GG0A 1KP0A 5JHUA 1QXZA 4U6WA 2GGCA 3L24A 4IF7A 1WBQA 2GG3A 2BWWA 2P9AA 4ZNGA 1C22A 4FLLA 3PKBA 2P98A 5CDEA 2DFIA 1QXWA 2BWSA 1W2MA 4IECA 3OOOA 5CDLA 1B59A 1MATA 3IU7A 4U71A 1A16A 3QOCA 2BH3A 2ADUA 2GU4A 1YW8A 4OOKA 4R60A 4U70A 1YVMA 1N51A 1XGOA 4PNCA 1QXYA 2BHAA 2GG8A 2GG2A 3CB6A 3RVAA 2GZ5A 1XGMA 1O0XA 2BWYA 2BWXA 2G6PA 4U1BA 1R58A 1QZYA 2GTXA 4PV4A 3IU9A 3OVKA 2OKNA 4U6EA 4RZYA 2EA2A 5FCHA 4S01A 4A6WA 3PKCA 4FKCA 1Y1NA 2GG5A 2OAZA 2GG9A 1JAWA 2EA4A 5CDVA 3I7MA 4FO7A 2B3HA 2GG7A 4U76A 4A6VA 1PV9A 3PEBA 2EVCA 2HOWA 3TB5A 2V3XA 3BIQA 3MX6A 2BHCA 2Q96A 3PKEA 1R5HA 4MATA 2Q8KA 4EGEA 1M35A 2GU6A 4IKRA 4FLIA 1WL9A 4RZZA 2ZSGA 2V3YA 1KQ9A 1W7VA 3PKDA 4FLJA 3IG4A 3FMQA 2IW2A 2P99A 2BWVA 3BIPA 1C27A 3CB5A 4ZWPA 4IDYA 3RORA 1CHMA
chains in the Genus database with same CATH topology
5CIKA 2BN7A 3BITA 3MATA 4IU6A 4ZWUA 4FUKA 4U75A 4IPAA 1B6AA 2GGBA 2GU5A 2NQ7A 3L7GA 1WLRA 4HXXA 4RGZ1 4FLKA 4IKSA 2BB7A 2NQ6A 3PKAA 4U6JA 1WKMA 2EVOA 1WL6A 2BHDA 5JI6A 1XGSA 2V3ZA 1C23A 1BN5A 3CTZA 4KM3A 1XNZA 3IU8A 4FO8A 4QR8A 2B3KA 3O5VA 2Q95A 3S6BA 4Z7MA 2EVMA 2GA2A 4JUQA 2B3LA 2GU7A 3IL0A 4S2TP 2BWTA 3PN9A 3FMRA 1C24A 4U69A 4S00A 1BOAA 1WY2A 1R5GA 3D27A 3TAVA 5CNXA 5CE6A 1KQ0A 2Q92A 4U6CA 1YW9A 1YW7A 5CLSA 3MR1A 5D6FA 2Q93A 1WN1A 3FM3A 5JFRA 5E5BA 4S2RP 2V6CA 4IKTA 1C21A 2MATA 4U6ZA 4U73A 3Q6DA 4ZWOA 5D6EA 2Q94A 5FCFA 2BHBA 4B28A 1XGNA 5E2CA 1YJ3A 2BWUA 4IKUA 2GG0A 1KP0A 5JHUA 1QXZA 4U6WA 2GGCA 3L24A 4IF7A 1WBQA 2GG3A 2BWWA 2P9AA 4ZNGA 1C22A 4FLLA 3PKBA 2P98A 5CDEA 2DFIA 1QXWA 2BWSA 1W2MA 4IECA 3OOOA 5CDLA 1B59A 1MATA 3IU7A 4U71A 1A16A 3QOCA 2BH3A 2ADUA 2GU4A 1YW8A 4OOKA 4R60A 4U70A 1YVMA 1N51A 1XGOA 4PNCA 1QXYA 2BHAA 2GG8A 2GG2A 3CB6A 3RVAA 2GZ5A 1XGMA 1O0XA 2BWYA 2BWXA 2G6PA 4U1BA 1R58A 1QZYA 2GTXA 4PV4A 3IU9A 3OVKA 2OKNA 4U6EA 4RZYA 2EA2A 5FCHA 4S01A 4A6WA 3PKCA 4FKCA 1Y1NA 2GG5A 2OAZA 2GG9A 1JAWA 2EA4A 5CDVA 3I7MA 4FO7A 2B3HA 2GG7A 4U76A 4A6VA 1PV9A 3PEBA 2EVCA 2HOWA 3TB5A 2V3XA 3BIQA 3MX6A 2BHCA 2Q96A 3PKEA 1R5HA 4MATA 2Q8KA 4EGEA 1M35A 2GU6A 4IKRA 4FLIA 1WL9A 4RZZA 2ZSGA 2V3YA 1KQ9A 1W7VA 3PKDA 4FLJA 3IG4A 3FMQA 2IW2A 2P99A 2BWVA 3BIPA 1C27A 3CB5A 4ZWPA 4IDYA 3RORA 1CHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CIK A;  2BN7 A;  3BIT A;  3MAT A;  4IU6 A;  4ZWU A;  4FUK A;  4U75 A;  4IPA A;  1B6A A;  2GGB A;  2GU5 A;  2NQ7 A;  3L7G A;  1WLR A;  4HXX A;  4RGZ 1;  4FLK A;  4IKS A;  2BB7 A;  2NQ6 A;  3PKA A;  4U6J A;  1WKM A;  2EVO A;  1WL6 A;  2BHD A;  5JI6 A;  1XGS A;  2V3Z A;  1C23 A;  1BN5 A;  3CTZ A;  4KM3 A;  1XNZ A;  3IU8 A;  4FO8 A;  4QR8 A;  2B3K A;  3O5V A;  2Q95 A;  3S6B A;  4Z7M A;  2EVM A;  2GA2 A;  4JUQ A;  2B3L A;  2GU7 A;  3IL0 A;  4S2T P;  2BWT A;  3PN9 A;  3FMR A;  1C24 A;  4U69 A;  4S00 A;  1BOA A;  1WY2 A;  1R5G A;  3D27 A;  3TAV A;  5CNX A;  5CE6 A;  1KQ0 A;  2Q92 A;  4U6C A;  1YW9 A;  1YW7 A;  5CLS A;  3MR1 A;  5D6F A;  2Q93 A;  1WN1 A;  3FM3 A;  5JFR A;  5E5B A;  4S2R P;  2V6C A;  4IKT A;  1C21 A;  2MAT A;  4U6Z A;  4U73 A;  3Q6D A;  4ZWO A;  5D6E A;  2Q94 A;  5FCF A;  2BHB A;  4B28 A;  1XGN A;  5E2C A;  1YJ3 A;  2BWU A;  4IKU A;  2GG0 A;  1KP0 A;  5JHU A;  1QXZ A;  4U6W A;  2GGC A;  3L24 A;  4IF7 A;  1WBQ A;  2GG3 A;  2BWW A;  2P9A A;  4ZNG A;  1C22 A;  4FLL A;  3PKB A;  2P98 A;  5CDE A;  2DFI A;  1QXW A;  2BWS A;  1W2M A;  4IEC A;  3OOO A;  5CDL A;  1B59 A;  1MAT A;  3IU7 A;  4U71 A;  1A16 A;  3QOC A;  2BH3 A;  2ADU A;  2GU4 A;  1YW8 A;  4OOK A;  4R60 A;  4U70 A;  1YVM A;  1N51 A;  1XGO A;  4PNC A;  1QXY A;  2BHA A;  2GG8 A;  2GG2 A;  3CB6 A;  3RVA A;  2GZ5 A;  1XGM A;  1O0X A;  2BWY A;  2BWX A;  2G6P A;  4U1B A;  1R58 A;  1QZY A;  2GTX A;  4PV4 A;  3IU9 A;  3OVK A;  2OKN A;  4U6E A;  4RZY A;  2EA2 A;  5FCH A;  4S01 A;  4A6W A;  3PKC A;  4FKC A;  1Y1N A;  2GG5 A;  2OAZ A;  2GG9 A;  1JAW A;  2EA4 A;  5CDV A;  3I7M A;  4FO7 A;  2B3H A;  2GG7 A;  4U76 A;  4A6V A;  1PV9 A;  3PEB A;  2EVC A;  2HOW A;  3TB5 A;  2V3X A;  3BIQ A;  3MX6 A;  2BHC A;  2Q96 A;  3PKE A;  1R5H A;  4MAT A;  2Q8K A;  4EGE A;  1M35 A;  2GU6 A;  4IKR A;  4FLI A;  1WL9 A;  4RZZ A;  2ZSG A;  2V3Y A;  1KQ9 A;  1W7V A;  3PKD A;  4FLJ A;  3IG4 A;  3FMQ A;  2IW2 A;  2P99 A;  2BWV A;  3BIP A;  1C27 A;  3CB5 A;  4ZWP A;  4IDY A;  3ROR A;  1CHM A; 
#chains in the Genus database with same CATH topology
 5CIK A;  2BN7 A;  3BIT A;  3MAT A;  4IU6 A;  4ZWU A;  4FUK A;  4U75 A;  4IPA A;  1B6A A;  2GGB A;  2GU5 A;  2NQ7 A;  3L7G A;  1WLR A;  4HXX A;  4RGZ 1;  4FLK A;  4IKS A;  2BB7 A;  2NQ6 A;  3PKA A;  4U6J A;  1WKM A;  2EVO A;  1WL6 A;  2BHD A;  5JI6 A;  1XGS A;  2V3Z A;  1C23 A;  1BN5 A;  3CTZ A;  4KM3 A;  1XNZ A;  3IU8 A;  4FO8 A;  4QR8 A;  2B3K A;  3O5V A;  2Q95 A;  3S6B A;  4Z7M A;  2EVM A;  2GA2 A;  4JUQ A;  2B3L A;  2GU7 A;  3IL0 A;  4S2T P;  2BWT A;  3PN9 A;  3FMR A;  1C24 A;  4U69 A;  4S00 A;  1BOA A;  1WY2 A;  1R5G A;  3D27 A;  3TAV A;  5CNX A;  5CE6 A;  1KQ0 A;  2Q92 A;  4U6C A;  1YW9 A;  1YW7 A;  5CLS A;  3MR1 A;  5D6F A;  2Q93 A;  1WN1 A;  3FM3 A;  5JFR A;  5E5B A;  4S2R P;  2V6C A;  4IKT A;  1C21 A;  2MAT A;  4U6Z A;  4U73 A;  3Q6D A;  4ZWO A;  5D6E A;  2Q94 A;  5FCF A;  2BHB A;  4B28 A;  1XGN A;  5E2C A;  1YJ3 A;  2BWU A;  4IKU A;  2GG0 A;  1KP0 A;  5JHU A;  1QXZ A;  4U6W A;  2GGC A;  3L24 A;  4IF7 A;  1WBQ A;  2GG3 A;  2BWW A;  2P9A A;  4ZNG A;  1C22 A;  4FLL A;  3PKB A;  2P98 A;  5CDE A;  2DFI A;  1QXW A;  2BWS A;  1W2M A;  4IEC A;  3OOO A;  5CDL A;  1B59 A;  1MAT A;  3IU7 A;  4U71 A;  1A16 A;  3QOC A;  2BH3 A;  2ADU A;  2GU4 A;  1YW8 A;  4OOK A;  4R60 A;  4U70 A;  1YVM A;  1N51 A;  1XGO A;  4PNC A;  1QXY A;  2BHA A;  2GG8 A;  2GG2 A;  3CB6 A;  3RVA A;  2GZ5 A;  1XGM A;  1O0X A;  2BWY A;  2BWX A;  2G6P A;  4U1B A;  1R58 A;  1QZY A;  2GTX A;  4PV4 A;  3IU9 A;  3OVK A;  2OKN A;  4U6E A;  4RZY A;  2EA2 A;  5FCH A;  4S01 A;  4A6W A;  3PKC A;  4FKC A;  1Y1N A;  2GG5 A;  2OAZ A;  2GG9 A;  1JAW A;  2EA4 A;  5CDV A;  3I7M A;  4FO7 A;  2B3H A;  2GG7 A;  4U76 A;  4A6V A;  1PV9 A;  3PEB A;  2EVC A;  2HOW A;  3TB5 A;  2V3X A;  3BIQ A;  3MX6 A;  2BHC A;  2Q96 A;  3PKE A;  1R5H A;  4MAT A;  2Q8K A;  4EGE A;  1M35 A;  2GU6 A;  4IKR A;  4FLI A;  1WL9 A;  4RZZ A;  2ZSG A;  2V3Y A;  1KQ9 A;  1W7V A;  3PKD A;  4FLJ A;  3IG4 A;  3FMQ A;  2IW2 A;  2P99 A;  2BWV A;  3BIP A;  1C27 A;  3CB5 A;  4ZWP A;  4IDY A;  3ROR A;  1CHM A; 
#chains in the Genus database with same CATH homology
 5CIK A;  2BN7 A;  3BIT A;  3MAT A;  4IU6 A;  4ZWU A;  4FUK A;  4U75 A;  4IPA A;  1B6A A;  2GGB A;  2GU5 A;  2NQ7 A;  3L7G A;  1WLR A;  4HXX A;  4RGZ 1;  4FLK A;  4IKS A;  2BB7 A;  2NQ6 A;  3PKA A;  4U6J A;  1WKM A;  2EVO A;  1WL6 A;  2BHD A;  5JI6 A;  1XGS A;  2V3Z A;  1C23 A;  1BN5 A;  3CTZ A;  4KM3 A;  1XNZ A;  3IU8 A;  4FO8 A;  4QR8 A;  2B3K A;  3O5V A;  2Q95 A;  3S6B A;  4Z7M A;  2EVM A;  2GA2 A;  4JUQ A;  2B3L A;  2GU7 A;  3IL0 A;  4S2T P;  2BWT A;  3PN9 A;  3FMR A;  1C24 A;  4U69 A;  4S00 A;  1BOA A;  1WY2 A;  1R5G A;  3D27 A;  3TAV A;  5CNX A;  5CE6 A;  1KQ0 A;  2Q92 A;  4U6C A;  1YW9 A;  1YW7 A;  5CLS A;  3MR1 A;  5D6F A;  2Q93 A;  1WN1 A;  3FM3 A;  5JFR A;  5E5B A;  4S2R P;  2V6C A;  4IKT A;  1C21 A;  2MAT A;  4U6Z A;  4U73 A;  3Q6D A;  4ZWO A;  5D6E A;  2Q94 A;  5FCF A;  2BHB A;  4B28 A;  1XGN A;  5E2C A;  1YJ3 A;  2BWU A;  4IKU A;  2GG0 A;  1KP0 A;  5JHU A;  1QXZ A;  4U6W A;  2GGC A;  3L24 A;  4IF7 A;  1WBQ A;  2GG3 A;  2BWW A;  2P9A A;  4ZNG A;  1C22 A;  4FLL A;  3PKB A;  2P98 A;  5CDE A;  2DFI A;  1QXW A;  2BWS A;  1W2M A;  4IEC A;  3OOO A;  5CDL A;  1B59 A;  1MAT A;  3IU7 A;  4U71 A;  1A16 A;  3QOC A;  2BH3 A;  2ADU A;  2GU4 A;  1YW8 A;  4OOK A;  4R60 A;  4U70 A;  1YVM A;  1N51 A;  1XGO A;  4PNC A;  1QXY A;  2BHA A;  2GG8 A;  2GG2 A;  3CB6 A;  3RVA A;  2GZ5 A;  1XGM A;  1O0X A;  2BWY A;  2BWX A;  2G6P A;  4U1B A;  1R58 A;  1QZY A;  2GTX A;  4PV4 A;  3IU9 A;  3OVK A;  2OKN A;  4U6E A;  4RZY A;  2EA2 A;  5FCH A;  4S01 A;  4A6W A;  3PKC A;  4FKC A;  1Y1N A;  2GG5 A;  2OAZ A;  2GG9 A;  1JAW A;  2EA4 A;  5CDV A;  3I7M A;  4FO7 A;  2B3H A;  2GG7 A;  4U76 A;  4A6V A;  1PV9 A;  3PEB A;  2EVC A;  2HOW A;  3TB5 A;  2V3X A;  3BIQ A;  3MX6 A;  2BHC A;  2Q96 A;  3PKE A;  1R5H A;  4MAT A;  2Q8K A;  4EGE A;  1M35 A;  2GU6 A;  4IKR A;  4FLI A;  1WL9 A;  4RZZ A;  2ZSG A;  2V3Y A;  1KQ9 A;  1W7V A;  3PKD A;  4FLJ A;  3IG4 A;  3FMQ A;  2IW2 A;  2P99 A;  2BWV A;  3BIP A;  1C27 A;  3CB5 A;  4ZWP A;  4IDY A;  3ROR A;  1CHM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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