3PEBA

The structure of a creatine_n superfamily domain of a dipeptidase from streptococcus thermophilus.
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
132
structure length
132
Chain Sequence
AMSKLDRIRHFLNENKSGLAIVSDPVTVNYLTGFDCDPHERQMFLFVYENREPALFVPALEVARASSVLDFPVFGYVDSENPWQKIKAGLASTDIPIIYAEFDNLNVTKFQGLQTVFEGRFENLTPFIHKMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Streptococcus thermophilus
publication title The Structure of a Creatine_N Superfamily domain of a dipeptidase from Streptococcus thermophilus.
rcsb
molecule keywords Dipeptidase
total genus 41
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2010-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pebA00
1KP0A 1N51A 5CE6A 3OOOA 5CDEA 1W7VA 4ZNGA 1W2MA 3CB6A 5FCHA 3O5VA 3L7GA 5E5BA 4S2RP 4S01A 3CTZA 4RGZ1 4S00A 1WLRA 3PN9A 1WY2A 2BHDA 4PV4A 1WL9A 2BWWA 2BN7A 4S2TP 2BWUA 2BHAA 2BWTA 4RZYA 3I7MA 4B28A 1PV9A 5CIKA 2BWYA 4ZWUA 3QOCA 2BWVA 2BHCA 3BITA 2BH3A 2OKNA 5E2CA 2BHBA 4ZWOA 3IL0A 4FKCA 2V3XA 3PEBA 3Q6DA 1M35A 1WBQA 1CHMA 2V3ZA 3BIPA 1JAWA 3OVKA 2HOWA 2ZSGA 3BIQA 3CB5A 5CDVA 4RZZA 2IW2A 2V3YA 1A16A 4ZWPA 1WN1A 5FCFA 4EGEA 3L24A 2BWSA 5CDLA 1WL6A 4QR8A 4R60A 2BWXA 3RVAA 5CNXA 3IG4A
chains in the Genus database with same CATH superfamily
1KP0A 1N51A 5CE6A 3OOOA 5CDEA 1W7VA 4ZNGA 1W2MA 3CB6A 5FCHA 3O5VA 3L7GA 5E5BA 4S2RP 4S01A 3CTZA 4RGZ1 4S00A 1WLRA 3PN9A 1WY2A 2BHDA 4PV4A 1WL9A 2BWWA 2BN7A 4S2TP 2BWUA 2BHAA 2BWTA 4RZYA 3I7MA 4B28A 1PV9A 5CIKA 2BWYA 4ZWUA 3QOCA 2BWVA 2BHCA 3BITA 2BH3A 2OKNA 5E2CA 2BHBA 4ZWOA 3IL0A 4FKCA 2V3XA 3PEBA 3Q6DA 1M35A 1WBQA 1CHMA 2V3ZA 3BIPA 1JAWA 3OVKA 2HOWA 2ZSGA 3BIQA 3CB5A 5CDVA 4RZZA 2IW2A 2V3YA 1A16A 4ZWPA 1WN1A 5FCFA 4EGEA 3L24A 2BWSA 5CDLA 1WL6A 4QR8A 4R60A 2BWXA 3RVAA 5CNXA 3IG4A
chains in the Genus database with same CATH topology
1KP0A 1N51A 5CE6A 3OOOA 5CDEA 1W7VA 4ZNGA 1W2MA 3CB6A 5FCHA 3O5VA 3L7GA 5E5BA 4S2RP 4S01A 3CTZA 4RGZ1 4S00A 1WLRA 3PN9A 1WY2A 2BHDA 4PV4A 1WL9A 2BWWA 2BN7A 4S2TP 2BWUA 2BHAA 2BWTA 4RZYA 3I7MA 4B28A 1PV9A 5CIKA 2BWYA 4ZWUA 3QOCA 2BWVA 2BHCA 3BITA 2BH3A 2OKNA 5E2CA 2BHBA 4ZWOA 3IL0A 4FKCA 2V3XA 3PEBA 3Q6DA 1M35A 1WBQA 1CHMA 2V3ZA 3BIPA 1JAWA 3OVKA 2HOWA 2ZSGA 3BIQA 3CB5A 5CDVA 4RZZA 2IW2A 2V3YA 1A16A 4ZWPA 1WN1A 5FCFA 4EGEA 3L24A 2BWSA 5CDLA 1WL6A 4QR8A 4R60A 2BWXA 3RVAA 5CNXA 3IG4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KP0 A;  1N51 A;  5CE6 A;  3OOO A;  5CDE A;  1W7V A;  4ZNG A;  1W2M A;  3CB6 A;  5FCH A;  3O5V A;  3L7G A;  5E5B A;  4S2R P;  4S01 A;  3CTZ A;  4RGZ 1;  4S00 A;  1WLR A;  3PN9 A;  1WY2 A;  2BHD A;  4PV4 A;  1WL9 A;  2BWW A;  2BN7 A;  4S2T P;  2BWU A;  2BHA A;  2BWT A;  4RZY A;  3I7M A;  4B28 A;  1PV9 A;  5CIK A;  2BWY A;  4ZWU A;  3QOC A;  2BWV A;  2BHC A;  3BIT A;  2BH3 A;  2OKN A;  5E2C A;  2BHB A;  4ZWO A;  3IL0 A;  4FKC A;  2V3X A;  3PEB A;  3Q6D A;  1M35 A;  1WBQ A;  1CHM A;  2V3Z A;  3BIP A;  1JAW A;  3OVK A;  2HOW A;  2ZSG A;  3BIQ A;  3CB5 A;  5CDV A;  4RZZ A;  2IW2 A;  2V3Y A;  1A16 A;  4ZWP A;  1WN1 A;  5FCF A;  4EGE A;  3L24 A;  2BWS A;  5CDL A;  1WL6 A;  4QR8 A;  4R60 A;  2BWX A;  3RVA A;  5CNX A;  3IG4 A; 
#chains in the Genus database with same CATH topology
 1KP0 A;  1N51 A;  5CE6 A;  3OOO A;  5CDE A;  1W7V A;  4ZNG A;  1W2M A;  3CB6 A;  5FCH A;  3O5V A;  3L7G A;  5E5B A;  4S2R P;  4S01 A;  3CTZ A;  4RGZ 1;  4S00 A;  1WLR A;  3PN9 A;  1WY2 A;  2BHD A;  4PV4 A;  1WL9 A;  2BWW A;  2BN7 A;  4S2T P;  2BWU A;  2BHA A;  2BWT A;  4RZY A;  3I7M A;  4B28 A;  1PV9 A;  5CIK A;  2BWY A;  4ZWU A;  3QOC A;  2BWV A;  2BHC A;  3BIT A;  2BH3 A;  2OKN A;  5E2C A;  2BHB A;  4ZWO A;  3IL0 A;  4FKC A;  2V3X A;  3PEB A;  3Q6D A;  1M35 A;  1WBQ A;  1CHM A;  2V3Z A;  3BIP A;  1JAW A;  3OVK A;  2HOW A;  2ZSG A;  3BIQ A;  3CB5 A;  5CDV A;  4RZZ A;  2IW2 A;  2V3Y A;  1A16 A;  4ZWP A;  1WN1 A;  5FCF A;  4EGE A;  3L24 A;  2BWS A;  5CDL A;  1WL6 A;  4QR8 A;  4R60 A;  2BWX A;  3RVA A;  5CNX A;  3IG4 A; 
#chains in the Genus database with same CATH homology
 1KP0 A;  1N51 A;  5CE6 A;  3OOO A;  5CDE A;  1W7V A;  4ZNG A;  1W2M A;  3CB6 A;  5FCH A;  3O5V A;  3L7G A;  5E5B A;  4S2R P;  4S01 A;  3CTZ A;  4RGZ 1;  4S00 A;  1WLR A;  3PN9 A;  1WY2 A;  2BHD A;  4PV4 A;  1WL9 A;  2BWW A;  2BN7 A;  4S2T P;  2BWU A;  2BHA A;  2BWT A;  4RZY A;  3I7M A;  4B28 A;  1PV9 A;  5CIK A;  2BWY A;  4ZWU A;  3QOC A;  2BWV A;  2BHC A;  3BIT A;  2BH3 A;  2OKN A;  5E2C A;  2BHB A;  4ZWO A;  3IL0 A;  4FKC A;  2V3X A;  3PEB A;  3Q6D A;  1M35 A;  1WBQ A;  1CHM A;  2V3Z A;  3BIP A;  1JAW A;  3OVK A;  2HOW A;  2ZSG A;  3BIQ A;  3CB5 A;  5CDV A;  4RZZ A;  2IW2 A;  2V3Y A;  1A16 A;  4ZWP A;  1WN1 A;  5FCF A;  4EGE A;  3L24 A;  2BWS A;  5CDL A;  1WL6 A;  4QR8 A;  4R60 A;  2BWX A;  3RVA A;  5CNX A;  3IG4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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