5FCFA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris, phosphate and mn bound
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Proline dipeptidase
publication title Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
pubmed doi rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
total genus 136
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5fcfA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5fcfA02
3PKBA 1N51A 3RVAA 4U6CA 2GA2A 4ZWUA 4RGZ1 4U75A 4IKSA 2BWWA 4U6JA 4ZNGA 4ZWOA 1WBQA 2GU7A 4IKRA 2ZSGA 3S6BA 2BHDA 3IL0A 1M35A 1A16A 4FKCA 1KP0A 2BHBA 3O5VA 3OOOA 1QXYA 5CE6A 1C21A 3PKDA 4FLJA 4IPAA 4U71A 1C22A 4U70A 3PEBA 2IW2A 2BWUA 2GG5A 4FUKA 4FLKA 2OKNA 1B59A 1YW7A 1WN1A 4IF7A 3BIPA 3CB5A 2B3LA 2Q8KA 1Y1NA 4U76A 4FO7A 4ZWPA 3MX6A 2GG2A 1KQ0A 1YW9A 4IKUA 1QXWA 1W7VA 3QOCA 2BWYA 2GGCA 1BOAA 4FO8A 2OAZA 2Q95A 1C24A 1WY2A 3L7GA 2ADUA 4U1BA 3CTZA 2B3HA 3L24A 2BHCA 2BWSA 2EA2A 2V3ZA 1XNZA 3BITA 1QXZA 2GU4A 1R5GA 1XGOA 3MATA 2NQ7A 3OVKA 3IG4A 4IDYA 2BHAA 1O0XA 2BH3A 4IU6A 4IECA 4B28A 1WL6A 3I7MA 2NQ6A 3PKAA 3CB6A 2Q93A 2GZ5A 3MR1A 2GU5A 2V3XA 5CIKA 4U69A 3FMQA 3TAVA 5CLSA 4IKTA 4KM3A 4R60A 2B3KA 3PKCA 3FM3A 1CHMA 4FLLA 1BN5A 2BWVA 4OOKA 1W2MA 4PV4A 2HOWA 4RZZA 4RZYA 2BB7A 2P99A 5JI6A 4PNCA 2EVCA 3BIQA 4HXXA 4QR8A 1YVMA 1WLRA 2EA4A 2BWXA 2G6PA 2GG0A 2P9AA 2GG8A 3PN9A 4U6ZA 4U6WA 2GTXA 5D6EA 2GG7A 1R5HA 1XGSA 2EVMA 2GGBA 2P98A 1WKMA 3IU9A 5FCHA 3IU8A 2GG3A 4EGEA 5FCFA 1YJ3A 4S2RP 3TB5A 2V6CA 4JUQA 1JAWA 4S2TP 4A6VA 5E2CA 5JHUA 2BWTA 2GG9A 3D27A 5CDLA 1QZYA 4S00A 2GU6A 1MATA 2DFIA 1C27A 2Q96A 3IU7A 1C23A 2EVOA 2Q94A 2MATA 5E5BA 1XGNA 4FLIA 1PV9A 2BN7A 2V3YA 3Q6DA 1XGMA 4U73A 5CDVA 2Q92A 1WL9A 5CNXA 3FMRA 4MATA 5D6FA 1KQ9A 3RORA 4U6EA 3PKEA 5JFRA 5CDEA 4Z7MA 1YW8A 4S01A 1R58A 4A6WA 1B6AA
chains in the Genus database with same CATH superfamily
3PKBA 1N51A 3RVAA 4U6CA 2GA2A 4ZWUA 4RGZ1 4U75A 4IKSA 2BWWA 4U6JA 4ZNGA 4ZWOA 1WBQA 2GU7A 4IKRA 2ZSGA 3S6BA 2BHDA 3IL0A 1M35A 1A16A 4FKCA 1KP0A 2BHBA 3O5VA 3OOOA 1QXYA 5CE6A 1C21A 3PKDA 4FLJA 4IPAA 4U71A 1C22A 4U70A 3PEBA 2IW2A 2BWUA 2GG5A 4FUKA 4FLKA 2OKNA 1B59A 1YW7A 1WN1A 4IF7A 3BIPA 3CB5A 2B3LA 2Q8KA 1Y1NA 4U76A 4FO7A 4ZWPA 3MX6A 2GG2A 1KQ0A 1YW9A 4IKUA 1QXWA 1W7VA 3QOCA 2BWYA 2GGCA 1BOAA 4FO8A 2OAZA 2Q95A 1C24A 1WY2A 3L7GA 2ADUA 4U1BA 3CTZA 2B3HA 3L24A 2BHCA 2BWSA 2EA2A 2V3ZA 1XNZA 3BITA 1QXZA 2GU4A 1R5GA 1XGOA 3MATA 2NQ7A 3OVKA 3IG4A 4IDYA 2BHAA 1O0XA 2BH3A 4IU6A 4IECA 4B28A 1WL6A 3I7MA 2NQ6A 3PKAA 3CB6A 2Q93A 2GZ5A 3MR1A 2GU5A 2V3XA 5CIKA 4U69A 3FMQA 3TAVA 5CLSA 4IKTA 4KM3A 4R60A 2B3KA 3PKCA 3FM3A 1CHMA 4FLLA 1BN5A 2BWVA 4OOKA 1W2MA 4PV4A 2HOWA 4RZZA 4RZYA 2BB7A 2P99A 5JI6A 4PNCA 2EVCA 3BIQA 4HXXA 4QR8A 1YVMA 1WLRA 2EA4A 2BWXA 2G6PA 2GG0A 2P9AA 2GG8A 3PN9A 4U6ZA 4U6WA 2GTXA 5D6EA 2GG7A 1R5HA 1XGSA 2EVMA 2GGBA 2P98A 1WKMA 3IU9A 5FCHA 3IU8A 2GG3A 4EGEA 5FCFA 1YJ3A 4S2RP 3TB5A 2V6CA 4JUQA 1JAWA 4S2TP 4A6VA 5E2CA 5JHUA 2BWTA 2GG9A 3D27A 5CDLA 1QZYA 4S00A 2GU6A 1MATA 2DFIA 1C27A 2Q96A 3IU7A 1C23A 2EVOA 2Q94A 2MATA 5E5BA 1XGNA 4FLIA 1PV9A 2BN7A 2V3YA 3Q6DA 1XGMA 4U73A 5CDVA 2Q92A 1WL9A 5CNXA 3FMRA 4MATA 5D6FA 1KQ9A 3RORA 4U6EA 3PKEA 5JFRA 5CDEA 4Z7MA 1YW8A 4S01A 1R58A 4A6WA 1B6AA
chains in the Genus database with same CATH topology
3PKBA 1N51A 3RVAA 4U6CA 2GA2A 4ZWUA 4RGZ1 4U75A 4IKSA 2BWWA 4U6JA 4ZNGA 4ZWOA 1WBQA 2GU7A 4IKRA 2ZSGA 3S6BA 2BHDA 3IL0A 1M35A 1A16A 4FKCA 1KP0A 2BHBA 3O5VA 3OOOA 1QXYA 5CE6A 1C21A 3PKDA 4FLJA 4IPAA 4U71A 1C22A 4U70A 3PEBA 2IW2A 2BWUA 2GG5A 4FUKA 4FLKA 2OKNA 1B59A 1YW7A 1WN1A 4IF7A 3BIPA 3CB5A 2B3LA 2Q8KA 1Y1NA 4U76A 4FO7A 4ZWPA 3MX6A 2GG2A 1KQ0A 1YW9A 4IKUA 1QXWA 1W7VA 3QOCA 2BWYA 2GGCA 1BOAA 4FO8A 2OAZA 2Q95A 1C24A 1WY2A 3L7GA 2ADUA 4U1BA 3CTZA 2B3HA 3L24A 2BHCA 2BWSA 2EA2A 2V3ZA 1XNZA 3BITA 1QXZA 2GU4A 1R5GA 1XGOA 3MATA 2NQ7A 3OVKA 3IG4A 4IDYA 2BHAA 1O0XA 2BH3A 4IU6A 4IECA 4B28A 1WL6A 3I7MA 2NQ6A 3PKAA 3CB6A 2Q93A 2GZ5A 3MR1A 2GU5A 2V3XA 5CIKA 4U69A 3FMQA 3TAVA 5CLSA 4IKTA 4KM3A 4R60A 2B3KA 3PKCA 3FM3A 1CHMA 4FLLA 1BN5A 2BWVA 4OOKA 1W2MA 4PV4A 2HOWA 4RZZA 4RZYA 2BB7A 2P99A 5JI6A 4PNCA 2EVCA 3BIQA 4HXXA 4QR8A 1YVMA 1WLRA 2EA4A 2BWXA 2G6PA 2GG0A 2P9AA 2GG8A 3PN9A 4U6ZA 4U6WA 2GTXA 5D6EA 2GG7A 1R5HA 1XGSA 2EVMA 2GGBA 2P98A 1WKMA 3IU9A 5FCHA 3IU8A 2GG3A 4EGEA 5FCFA 1YJ3A 4S2RP 3TB5A 2V6CA 4JUQA 1JAWA 4S2TP 4A6VA 5E2CA 5JHUA 2BWTA 2GG9A 3D27A 5CDLA 1QZYA 4S00A 2GU6A 1MATA 2DFIA 1C27A 2Q96A 3IU7A 1C23A 2EVOA 2Q94A 2MATA 5E5BA 1XGNA 4FLIA 1PV9A 2BN7A 2V3YA 3Q6DA 1XGMA 4U73A 5CDVA 2Q92A 1WL9A 5CNXA 3FMRA 4MATA 5D6FA 1KQ9A 3RORA 4U6EA 3PKEA 5JFRA 5CDEA 4Z7MA 1YW8A 4S01A 1R58A 4A6WA 1B6AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PKB A;  1N51 A;  3RVA A;  4U6C A;  2GA2 A;  4ZWU A;  4RGZ 1;  4U75 A;  4IKS A;  2BWW A;  4U6J A;  4ZNG A;  4ZWO A;  1WBQ A;  2GU7 A;  4IKR A;  2ZSG A;  3S6B A;  2BHD A;  3IL0 A;  1M35 A;  1A16 A;  4FKC A;  1KP0 A;  2BHB A;  3O5V A;  3OOO A;  1QXY A;  5CE6 A;  1C21 A;  3PKD A;  4FLJ A;  4IPA A;  4U71 A;  1C22 A;  4U70 A;  3PEB A;  2IW2 A;  2BWU A;  2GG5 A;  4FUK A;  4FLK A;  2OKN A;  1B59 A;  1YW7 A;  1WN1 A;  4IF7 A;  3BIP A;  3CB5 A;  2B3L A;  2Q8K A;  1Y1N A;  4U76 A;  4FO7 A;  4ZWP A;  3MX6 A;  2GG2 A;  1KQ0 A;  1YW9 A;  4IKU A;  1QXW A;  1W7V A;  3QOC A;  2BWY A;  2GGC A;  1BOA A;  4FO8 A;  2OAZ A;  2Q95 A;  1C24 A;  1WY2 A;  3L7G A;  2ADU A;  4U1B A;  3CTZ A;  2B3H A;  3L24 A;  2BHC A;  2BWS A;  2EA2 A;  2V3Z A;  1XNZ A;  3BIT A;  1QXZ A;  2GU4 A;  1R5G A;  1XGO A;  3MAT A;  2NQ7 A;  3OVK A;  3IG4 A;  4IDY A;  2BHA A;  1O0X A;  2BH3 A;  4IU6 A;  4IEC A;  4B28 A;  1WL6 A;  3I7M A;  2NQ6 A;  3PKA A;  3CB6 A;  2Q93 A;  2GZ5 A;  3MR1 A;  2GU5 A;  2V3X A;  5CIK A;  4U69 A;  3FMQ A;  3TAV A;  5CLS A;  4IKT A;  4KM3 A;  4R60 A;  2B3K A;  3PKC A;  3FM3 A;  1CHM A;  4FLL A;  1BN5 A;  2BWV A;  4OOK A;  1W2M A;  4PV4 A;  2HOW A;  4RZZ A;  4RZY A;  2BB7 A;  2P99 A;  5JI6 A;  4PNC A;  2EVC A;  3BIQ A;  4HXX A;  4QR8 A;  1YVM A;  1WLR A;  2EA4 A;  2BWX A;  2G6P A;  2GG0 A;  2P9A A;  2GG8 A;  3PN9 A;  4U6Z A;  4U6W A;  2GTX A;  5D6E A;  2GG7 A;  1R5H A;  1XGS A;  2EVM A;  2GGB A;  2P98 A;  1WKM A;  3IU9 A;  5FCH A;  3IU8 A;  2GG3 A;  4EGE A;  5FCF A;  1YJ3 A;  4S2R P;  3TB5 A;  2V6C A;  4JUQ A;  1JAW A;  4S2T P;  4A6V A;  5E2C A;  5JHU A;  2BWT A;  2GG9 A;  3D27 A;  5CDL A;  1QZY A;  4S00 A;  2GU6 A;  1MAT A;  2DFI A;  1C27 A;  2Q96 A;  3IU7 A;  1C23 A;  2EVO A;  2Q94 A;  2MAT A;  5E5B A;  1XGN A;  4FLI A;  1PV9 A;  2BN7 A;  2V3Y A;  3Q6D A;  1XGM A;  4U73 A;  5CDV A;  2Q92 A;  1WL9 A;  5CNX A;  3FMR A;  4MAT A;  5D6F A;  1KQ9 A;  3ROR A;  4U6E A;  3PKE A;  5JFR A;  5CDE A;  4Z7M A;  1YW8 A;  4S01 A;  1R58 A;  4A6W A;  1B6A A; 
#chains in the Genus database with same CATH topology
 3PKB A;  1N51 A;  3RVA A;  4U6C A;  2GA2 A;  4ZWU A;  4RGZ 1;  4U75 A;  4IKS A;  2BWW A;  4U6J A;  4ZNG A;  4ZWO A;  1WBQ A;  2GU7 A;  4IKR A;  2ZSG A;  3S6B A;  2BHD A;  3IL0 A;  1M35 A;  1A16 A;  4FKC A;  1KP0 A;  2BHB A;  3O5V A;  3OOO A;  1QXY A;  5CE6 A;  1C21 A;  3PKD A;  4FLJ A;  4IPA A;  4U71 A;  1C22 A;  4U70 A;  3PEB A;  2IW2 A;  2BWU A;  2GG5 A;  4FUK A;  4FLK A;  2OKN A;  1B59 A;  1YW7 A;  1WN1 A;  4IF7 A;  3BIP A;  3CB5 A;  2B3L A;  2Q8K A;  1Y1N A;  4U76 A;  4FO7 A;  4ZWP A;  3MX6 A;  2GG2 A;  1KQ0 A;  1YW9 A;  4IKU A;  1QXW A;  1W7V A;  3QOC A;  2BWY A;  2GGC A;  1BOA A;  4FO8 A;  2OAZ A;  2Q95 A;  1C24 A;  1WY2 A;  3L7G A;  2ADU A;  4U1B A;  3CTZ A;  2B3H A;  3L24 A;  2BHC A;  2BWS A;  2EA2 A;  2V3Z A;  1XNZ A;  3BIT A;  1QXZ A;  2GU4 A;  1R5G A;  1XGO A;  3MAT A;  2NQ7 A;  3OVK A;  3IG4 A;  4IDY A;  2BHA A;  1O0X A;  2BH3 A;  4IU6 A;  4IEC A;  4B28 A;  1WL6 A;  3I7M A;  2NQ6 A;  3PKA A;  3CB6 A;  2Q93 A;  2GZ5 A;  3MR1 A;  2GU5 A;  2V3X A;  5CIK A;  4U69 A;  3FMQ A;  3TAV A;  5CLS A;  4IKT A;  4KM3 A;  4R60 A;  2B3K A;  3PKC A;  3FM3 A;  1CHM A;  4FLL A;  1BN5 A;  2BWV A;  4OOK A;  1W2M A;  4PV4 A;  2HOW A;  4RZZ A;  4RZY A;  2BB7 A;  2P99 A;  5JI6 A;  4PNC A;  2EVC A;  3BIQ A;  4HXX A;  4QR8 A;  1YVM A;  1WLR A;  2EA4 A;  2BWX A;  2G6P A;  2GG0 A;  2P9A A;  2GG8 A;  3PN9 A;  4U6Z A;  4U6W A;  2GTX A;  5D6E A;  2GG7 A;  1R5H A;  1XGS A;  2EVM A;  2GGB A;  2P98 A;  1WKM A;  3IU9 A;  5FCH A;  3IU8 A;  2GG3 A;  4EGE A;  5FCF A;  1YJ3 A;  4S2R P;  3TB5 A;  2V6C A;  4JUQ A;  1JAW A;  4S2T P;  4A6V A;  5E2C A;  5JHU A;  2BWT A;  2GG9 A;  3D27 A;  5CDL A;  1QZY A;  4S00 A;  2GU6 A;  1MAT A;  2DFI A;  1C27 A;  2Q96 A;  3IU7 A;  1C23 A;  2EVO A;  2Q94 A;  2MAT A;  5E5B A;  1XGN A;  4FLI A;  1PV9 A;  2BN7 A;  2V3Y A;  3Q6D A;  1XGM A;  4U73 A;  5CDV A;  2Q92 A;  1WL9 A;  5CNX A;  3FMR A;  4MAT A;  5D6F A;  1KQ9 A;  3ROR A;  4U6E A;  3PKE A;  5JFR A;  5CDE A;  4Z7M A;  1YW8 A;  4S01 A;  1R58 A;  4A6W A;  1B6A A; 
#chains in the Genus database with same CATH homology
 3PKB A;  1N51 A;  3RVA A;  4U6C A;  2GA2 A;  4ZWU A;  4RGZ 1;  4U75 A;  4IKS A;  2BWW A;  4U6J A;  4ZNG A;  4ZWO A;  1WBQ A;  2GU7 A;  4IKR A;  2ZSG A;  3S6B A;  2BHD A;  3IL0 A;  1M35 A;  1A16 A;  4FKC A;  1KP0 A;  2BHB A;  3O5V A;  3OOO A;  1QXY A;  5CE6 A;  1C21 A;  3PKD A;  4FLJ A;  4IPA A;  4U71 A;  1C22 A;  4U70 A;  3PEB A;  2IW2 A;  2BWU A;  2GG5 A;  4FUK A;  4FLK A;  2OKN A;  1B59 A;  1YW7 A;  1WN1 A;  4IF7 A;  3BIP A;  3CB5 A;  2B3L A;  2Q8K A;  1Y1N A;  4U76 A;  4FO7 A;  4ZWP A;  3MX6 A;  2GG2 A;  1KQ0 A;  1YW9 A;  4IKU A;  1QXW A;  1W7V A;  3QOC A;  2BWY A;  2GGC A;  1BOA A;  4FO8 A;  2OAZ A;  2Q95 A;  1C24 A;  1WY2 A;  3L7G A;  2ADU A;  4U1B A;  3CTZ A;  2B3H A;  3L24 A;  2BHC A;  2BWS A;  2EA2 A;  2V3Z A;  1XNZ A;  3BIT A;  1QXZ A;  2GU4 A;  1R5G A;  1XGO A;  3MAT A;  2NQ7 A;  3OVK A;  3IG4 A;  4IDY A;  2BHA A;  1O0X A;  2BH3 A;  4IU6 A;  4IEC A;  4B28 A;  1WL6 A;  3I7M A;  2NQ6 A;  3PKA A;  3CB6 A;  2Q93 A;  2GZ5 A;  3MR1 A;  2GU5 A;  2V3X A;  5CIK A;  4U69 A;  3FMQ A;  3TAV A;  5CLS A;  4IKT A;  4KM3 A;  4R60 A;  2B3K A;  3PKC A;  3FM3 A;  1CHM A;  4FLL A;  1BN5 A;  2BWV A;  4OOK A;  1W2M A;  4PV4 A;  2HOW A;  4RZZ A;  4RZY A;  2BB7 A;  2P99 A;  5JI6 A;  4PNC A;  2EVC A;  3BIQ A;  4HXX A;  4QR8 A;  1YVM A;  1WLR A;  2EA4 A;  2BWX A;  2G6P A;  2GG0 A;  2P9A A;  2GG8 A;  3PN9 A;  4U6Z A;  4U6W A;  2GTX A;  5D6E A;  2GG7 A;  1R5H A;  1XGS A;  2EVM A;  2GGB A;  2P98 A;  1WKM A;  3IU9 A;  5FCH A;  3IU8 A;  2GG3 A;  4EGE A;  5FCF A;  1YJ3 A;  4S2R P;  3TB5 A;  2V6C A;  4JUQ A;  1JAW A;  4S2T P;  4A6V A;  5E2C A;  5JHU A;  2BWT A;  2GG9 A;  3D27 A;  5CDL A;  1QZY A;  4S00 A;  2GU6 A;  1MAT A;  2DFI A;  1C27 A;  2Q96 A;  3IU7 A;  1C23 A;  2EVO A;  2Q94 A;  2MAT A;  5E5B A;  1XGN A;  4FLI A;  1PV9 A;  2BN7 A;  2V3Y A;  3Q6D A;  1XGM A;  4U73 A;  5CDV A;  2Q92 A;  1WL9 A;  5CNX A;  3FMR A;  4MAT A;  5D6F A;  1KQ9 A;  3ROR A;  4U6E A;  3PKE A;  5JFR A;  5CDE A;  4Z7M A;  1YW8 A;  4S01 A;  1R58 A;  4A6W A;  1B6A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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