5FCFA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris, phosphate and mn bound
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Xanthomonas campestris pv. campestris str. atcc 33913
publication title Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
pubmed doi rcsb
molecule keywords Proline dipeptidase
total genus 136
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5fcfA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5fcfA02
3CTZA 2BWYA 4RZZA 2B3HA 5E2CA 3MR1A 4S2TP 3IU9A 4IKSA 3IU8A 4FUKA 3BIPA 1KP0A 2BWXA 1W7VA 1YJ3A 4U69A 4HXXA 2Q96A 2V3ZA 1KQ0A 3FMQA 4KM3A 1C27A 2V3XA 1XGMA 4IKRA 4PNCA 4JUQA 1WY2A 1R5GA 2GG7A 1YW8A 4OOKA 4S01A 1XGNA 4IU6A 3RVAA 4EGEA 1B6AA 4IDYA 4A6WA 2GU7A 1R58A 3BIQA 4IF7A 3PKAA 3MX6A 4U75A 4U76A 3TB5A 5CIKA 2P98A 2GG8A 1C23A 2NQ7A 2P9AA 1QXYA 2GG9A 2BWSA 1C22A 4FLIA 2BWTA 3I7MA 2GG2A 4IECA 1N51A 4U73A 4ZWPA 5CE6A 2GU6A 4FKCA 5CLSA 3D27A 4FLLA 3IL0A 4IKUA 3PKCA 3RORA 2BWUA 2NQ6A 2ZSGA 1Y1NA 4Z7MA 2BN7A 3L24A 2DFIA 2EVOA 4MATA 2Q93A 5CNXA 1MATA 3OVKA 3L7GA 1A16A 4IKTA 2GG3A 2ADUA 1W2MA 1YW9A 4U6ZA 3FMRA 1JAWA 3O5VA 2GTXA 1CHMA 1WLRA 5E5BA 2BHCA 2GGBA 5D6EA 2HOWA 3PEBA 4ZNGA 1YVMA 1BN5A 4U1BA 5CDEA 1B59A 2GG0A 4B28A 5CDLA 5JFRA 3Q6DA 1BOAA 2BH3A 2Q94A 4S2RP 4FLKA 2GU4A 4U70A 4RGZ1 4R60A 2GA2A 1XGSA 1WN1A 1XNZA 4S00A 1WL9A 1C21A 3S6BA 1XGOA 4U6CA 2G6PA 4U6EA 3OOOA 4QR8A 1YW7A 2OAZA 2P99A 3IG4A 5JHUA 1WKMA 2MATA 4U6JA 1QZYA 2GU5A 4FLJA 1QXZA 3QOCA 4FO7A 5CDVA 2BWWA 3FM3A 3PKEA 5JI6A 3BITA 4A6VA 3CB5A 2Q92A 2IW2A 5FCHA 2GZ5A 1R5HA 3MATA 1PV9A 4PV4A 3TAVA 1WBQA 2BHDA 4FO8A 2B3LA 2BB7A 3IU7A 3PKBA 1O0XA 2B3KA 2BHAA 2EA2A 4U71A 3CB6A 1M35A 2BWVA 1WL6A 2EVCA 5D6FA 1QXWA 4U6WA 3PKDA 2BHBA 4ZWUA 2Q95A 4RZYA 4ZWOA 2OKNA 2EVMA 4IPAA 2Q8KA 2V6CA 1KQ9A 3PN9A 2V3YA 5FCFA 2EA4A 1C24A 2GGCA 2GG5A
chains in the Genus database with same CATH superfamily
3CTZA 2BWYA 4RZZA 2B3HA 5E2CA 3MR1A 4S2TP 3IU9A 4IKSA 3IU8A 4FUKA 3BIPA 1KP0A 2BWXA 1W7VA 1YJ3A 4U69A 4HXXA 2Q96A 2V3ZA 1KQ0A 3FMQA 4KM3A 1C27A 2V3XA 1XGMA 4IKRA 4PNCA 4JUQA 1WY2A 1R5GA 2GG7A 1YW8A 4OOKA 4S01A 1XGNA 4IU6A 3RVAA 4EGEA 1B6AA 4IDYA 4A6WA 2GU7A 1R58A 3BIQA 4IF7A 3PKAA 3MX6A 4U75A 4U76A 3TB5A 5CIKA 2P98A 2GG8A 1C23A 2NQ7A 2P9AA 1QXYA 2GG9A 2BWSA 1C22A 4FLIA 2BWTA 3I7MA 2GG2A 4IECA 1N51A 4U73A 4ZWPA 5CE6A 2GU6A 4FKCA 5CLSA 3D27A 4FLLA 3IL0A 4IKUA 3PKCA 3RORA 2BWUA 2NQ6A 2ZSGA 1Y1NA 4Z7MA 2BN7A 3L24A 2DFIA 2EVOA 4MATA 2Q93A 5CNXA 1MATA 3OVKA 3L7GA 1A16A 4IKTA 2GG3A 2ADUA 1W2MA 1YW9A 4U6ZA 3FMRA 1JAWA 3O5VA 2GTXA 1CHMA 1WLRA 5E5BA 2BHCA 2GGBA 5D6EA 2HOWA 3PEBA 4ZNGA 1YVMA 1BN5A 4U1BA 5CDEA 1B59A 2GG0A 4B28A 5CDLA 5JFRA 3Q6DA 1BOAA 2BH3A 2Q94A 4S2RP 4FLKA 2GU4A 4U70A 4RGZ1 4R60A 2GA2A 1XGSA 1WN1A 1XNZA 4S00A 1WL9A 1C21A 3S6BA 1XGOA 4U6CA 2G6PA 4U6EA 3OOOA 4QR8A 1YW7A 2OAZA 2P99A 3IG4A 5JHUA 1WKMA 2MATA 4U6JA 1QZYA 2GU5A 4FLJA 1QXZA 3QOCA 4FO7A 5CDVA 2BWWA 3FM3A 3PKEA 5JI6A 3BITA 4A6VA 3CB5A 2Q92A 2IW2A 5FCHA 2GZ5A 1R5HA 3MATA 1PV9A 4PV4A 3TAVA 1WBQA 2BHDA 4FO8A 2B3LA 2BB7A 3IU7A 3PKBA 1O0XA 2B3KA 2BHAA 2EA2A 4U71A 3CB6A 1M35A 2BWVA 1WL6A 2EVCA 5D6FA 1QXWA 4U6WA 3PKDA 2BHBA 4ZWUA 2Q95A 4RZYA 4ZWOA 2OKNA 2EVMA 4IPAA 2Q8KA 2V6CA 1KQ9A 3PN9A 2V3YA 5FCFA 2EA4A 1C24A 2GGCA 2GG5A
chains in the Genus database with same CATH topology
3CTZA 2BWYA 4RZZA 2B3HA 5E2CA 3MR1A 4S2TP 3IU9A 4IKSA 3IU8A 4FUKA 3BIPA 1KP0A 2BWXA 1W7VA 1YJ3A 4U69A 4HXXA 2Q96A 2V3ZA 1KQ0A 3FMQA 4KM3A 1C27A 2V3XA 1XGMA 4IKRA 4PNCA 4JUQA 1WY2A 1R5GA 2GG7A 1YW8A 4OOKA 4S01A 1XGNA 4IU6A 3RVAA 4EGEA 1B6AA 4IDYA 4A6WA 2GU7A 1R58A 3BIQA 4IF7A 3PKAA 3MX6A 4U75A 4U76A 3TB5A 5CIKA 2P98A 2GG8A 1C23A 2NQ7A 2P9AA 1QXYA 2GG9A 2BWSA 1C22A 4FLIA 2BWTA 3I7MA 2GG2A 4IECA 1N51A 4U73A 4ZWPA 5CE6A 2GU6A 4FKCA 5CLSA 3D27A 4FLLA 3IL0A 4IKUA 3PKCA 3RORA 2BWUA 2NQ6A 2ZSGA 1Y1NA 4Z7MA 2BN7A 3L24A 2DFIA 2EVOA 4MATA 2Q93A 5CNXA 1MATA 3OVKA 3L7GA 1A16A 4IKTA 2GG3A 2ADUA 1W2MA 1YW9A 4U6ZA 3FMRA 1JAWA 3O5VA 2GTXA 1CHMA 1WLRA 5E5BA 2BHCA 2GGBA 5D6EA 2HOWA 3PEBA 4ZNGA 1YVMA 1BN5A 4U1BA 5CDEA 1B59A 2GG0A 4B28A 5CDLA 5JFRA 3Q6DA 1BOAA 2BH3A 2Q94A 4S2RP 4FLKA 2GU4A 4U70A 4RGZ1 4R60A 2GA2A 1XGSA 1WN1A 1XNZA 4S00A 1WL9A 1C21A 3S6BA 1XGOA 4U6CA 2G6PA 4U6EA 3OOOA 4QR8A 1YW7A 2OAZA 2P99A 3IG4A 5JHUA 1WKMA 2MATA 4U6JA 1QZYA 2GU5A 4FLJA 1QXZA 3QOCA 4FO7A 5CDVA 2BWWA 3FM3A 3PKEA 5JI6A 3BITA 4A6VA 3CB5A 2Q92A 2IW2A 5FCHA 2GZ5A 1R5HA 3MATA 1PV9A 4PV4A 3TAVA 1WBQA 2BHDA 4FO8A 2B3LA 2BB7A 3IU7A 3PKBA 1O0XA 2B3KA 2BHAA 2EA2A 4U71A 3CB6A 1M35A 2BWVA 1WL6A 2EVCA 5D6FA 1QXWA 4U6WA 3PKDA 2BHBA 4ZWUA 2Q95A 4RZYA 4ZWOA 2OKNA 2EVMA 4IPAA 2Q8KA 2V6CA 1KQ9A 3PN9A 2V3YA 5FCFA 2EA4A 1C24A 2GGCA 2GG5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CTZ A;  2BWY A;  4RZZ A;  2B3H A;  5E2C A;  3MR1 A;  4S2T P;  3IU9 A;  4IKS A;  3IU8 A;  4FUK A;  3BIP A;  1KP0 A;  2BWX A;  1W7V A;  1YJ3 A;  4U69 A;  4HXX A;  2Q96 A;  2V3Z A;  1KQ0 A;  3FMQ A;  4KM3 A;  1C27 A;  2V3X A;  1XGM A;  4IKR A;  4PNC A;  4JUQ A;  1WY2 A;  1R5G A;  2GG7 A;  1YW8 A;  4OOK A;  4S01 A;  1XGN A;  4IU6 A;  3RVA A;  4EGE A;  1B6A A;  4IDY A;  4A6W A;  2GU7 A;  1R58 A;  3BIQ A;  4IF7 A;  3PKA A;  3MX6 A;  4U75 A;  4U76 A;  3TB5 A;  5CIK A;  2P98 A;  2GG8 A;  1C23 A;  2NQ7 A;  2P9A A;  1QXY A;  2GG9 A;  2BWS A;  1C22 A;  4FLI A;  2BWT A;  3I7M A;  2GG2 A;  4IEC A;  1N51 A;  4U73 A;  4ZWP A;  5CE6 A;  2GU6 A;  4FKC A;  5CLS A;  3D27 A;  4FLL A;  3IL0 A;  4IKU A;  3PKC A;  3ROR A;  2BWU A;  2NQ6 A;  2ZSG A;  1Y1N A;  4Z7M A;  2BN7 A;  3L24 A;  2DFI A;  2EVO A;  4MAT A;  2Q93 A;  5CNX A;  1MAT A;  3OVK A;  3L7G A;  1A16 A;  4IKT A;  2GG3 A;  2ADU A;  1W2M A;  1YW9 A;  4U6Z A;  3FMR A;  1JAW A;  3O5V A;  2GTX A;  1CHM A;  1WLR A;  5E5B A;  2BHC A;  2GGB A;  5D6E A;  2HOW A;  3PEB A;  4ZNG A;  1YVM A;  1BN5 A;  4U1B A;  5CDE A;  1B59 A;  2GG0 A;  4B28 A;  5CDL A;  5JFR A;  3Q6D A;  1BOA A;  2BH3 A;  2Q94 A;  4S2R P;  4FLK A;  2GU4 A;  4U70 A;  4RGZ 1;  4R60 A;  2GA2 A;  1XGS A;  1WN1 A;  1XNZ A;  4S00 A;  1WL9 A;  1C21 A;  3S6B A;  1XGO A;  4U6C A;  2G6P A;  4U6E A;  3OOO A;  4QR8 A;  1YW7 A;  2OAZ A;  2P99 A;  3IG4 A;  5JHU A;  1WKM A;  2MAT A;  4U6J A;  1QZY A;  2GU5 A;  4FLJ A;  1QXZ A;  3QOC A;  4FO7 A;  5CDV A;  2BWW A;  3FM3 A;  3PKE A;  5JI6 A;  3BIT A;  4A6V A;  3CB5 A;  2Q92 A;  2IW2 A;  5FCH A;  2GZ5 A;  1R5H A;  3MAT A;  1PV9 A;  4PV4 A;  3TAV A;  1WBQ A;  2BHD A;  4FO8 A;  2B3L A;  2BB7 A;  3IU7 A;  3PKB A;  1O0X A;  2B3K A;  2BHA A;  2EA2 A;  4U71 A;  3CB6 A;  1M35 A;  2BWV A;  1WL6 A;  2EVC A;  5D6F A;  1QXW A;  4U6W A;  3PKD A;  2BHB A;  4ZWU A;  2Q95 A;  4RZY A;  4ZWO A;  2OKN A;  2EVM A;  4IPA A;  2Q8K A;  2V6C A;  1KQ9 A;  3PN9 A;  2V3Y A;  5FCF A;  2EA4 A;  1C24 A;  2GGC A;  2GG5 A; 
#chains in the Genus database with same CATH topology
 3CTZ A;  2BWY A;  4RZZ A;  2B3H A;  5E2C A;  3MR1 A;  4S2T P;  3IU9 A;  4IKS A;  3IU8 A;  4FUK A;  3BIP A;  1KP0 A;  2BWX A;  1W7V A;  1YJ3 A;  4U69 A;  4HXX A;  2Q96 A;  2V3Z A;  1KQ0 A;  3FMQ A;  4KM3 A;  1C27 A;  2V3X A;  1XGM A;  4IKR A;  4PNC A;  4JUQ A;  1WY2 A;  1R5G A;  2GG7 A;  1YW8 A;  4OOK A;  4S01 A;  1XGN A;  4IU6 A;  3RVA A;  4EGE A;  1B6A A;  4IDY A;  4A6W A;  2GU7 A;  1R58 A;  3BIQ A;  4IF7 A;  3PKA A;  3MX6 A;  4U75 A;  4U76 A;  3TB5 A;  5CIK A;  2P98 A;  2GG8 A;  1C23 A;  2NQ7 A;  2P9A A;  1QXY A;  2GG9 A;  2BWS A;  1C22 A;  4FLI A;  2BWT A;  3I7M A;  2GG2 A;  4IEC A;  1N51 A;  4U73 A;  4ZWP A;  5CE6 A;  2GU6 A;  4FKC A;  5CLS A;  3D27 A;  4FLL A;  3IL0 A;  4IKU A;  3PKC A;  3ROR A;  2BWU A;  2NQ6 A;  2ZSG A;  1Y1N A;  4Z7M A;  2BN7 A;  3L24 A;  2DFI A;  2EVO A;  4MAT A;  2Q93 A;  5CNX A;  1MAT A;  3OVK A;  3L7G A;  1A16 A;  4IKT A;  2GG3 A;  2ADU A;  1W2M A;  1YW9 A;  4U6Z A;  3FMR A;  1JAW A;  3O5V A;  2GTX A;  1CHM A;  1WLR A;  5E5B A;  2BHC A;  2GGB A;  5D6E A;  2HOW A;  3PEB A;  4ZNG A;  1YVM A;  1BN5 A;  4U1B A;  5CDE A;  1B59 A;  2GG0 A;  4B28 A;  5CDL A;  5JFR A;  3Q6D A;  1BOA A;  2BH3 A;  2Q94 A;  4S2R P;  4FLK A;  2GU4 A;  4U70 A;  4RGZ 1;  4R60 A;  2GA2 A;  1XGS A;  1WN1 A;  1XNZ A;  4S00 A;  1WL9 A;  1C21 A;  3S6B A;  1XGO A;  4U6C A;  2G6P A;  4U6E A;  3OOO A;  4QR8 A;  1YW7 A;  2OAZ A;  2P99 A;  3IG4 A;  5JHU A;  1WKM A;  2MAT A;  4U6J A;  1QZY A;  2GU5 A;  4FLJ A;  1QXZ A;  3QOC A;  4FO7 A;  5CDV A;  2BWW A;  3FM3 A;  3PKE A;  5JI6 A;  3BIT A;  4A6V A;  3CB5 A;  2Q92 A;  2IW2 A;  5FCH A;  2GZ5 A;  1R5H A;  3MAT A;  1PV9 A;  4PV4 A;  3TAV A;  1WBQ A;  2BHD A;  4FO8 A;  2B3L A;  2BB7 A;  3IU7 A;  3PKB A;  1O0X A;  2B3K A;  2BHA A;  2EA2 A;  4U71 A;  3CB6 A;  1M35 A;  2BWV A;  1WL6 A;  2EVC A;  5D6F A;  1QXW A;  4U6W A;  3PKD A;  2BHB A;  4ZWU A;  2Q95 A;  4RZY A;  4ZWO A;  2OKN A;  2EVM A;  4IPA A;  2Q8K A;  2V6C A;  1KQ9 A;  3PN9 A;  2V3Y A;  5FCF A;  2EA4 A;  1C24 A;  2GGC A;  2GG5 A; 
#chains in the Genus database with same CATH homology
 3CTZ A;  2BWY A;  4RZZ A;  2B3H A;  5E2C A;  3MR1 A;  4S2T P;  3IU9 A;  4IKS A;  3IU8 A;  4FUK A;  3BIP A;  1KP0 A;  2BWX A;  1W7V A;  1YJ3 A;  4U69 A;  4HXX A;  2Q96 A;  2V3Z A;  1KQ0 A;  3FMQ A;  4KM3 A;  1C27 A;  2V3X A;  1XGM A;  4IKR A;  4PNC A;  4JUQ A;  1WY2 A;  1R5G A;  2GG7 A;  1YW8 A;  4OOK A;  4S01 A;  1XGN A;  4IU6 A;  3RVA A;  4EGE A;  1B6A A;  4IDY A;  4A6W A;  2GU7 A;  1R58 A;  3BIQ A;  4IF7 A;  3PKA A;  3MX6 A;  4U75 A;  4U76 A;  3TB5 A;  5CIK A;  2P98 A;  2GG8 A;  1C23 A;  2NQ7 A;  2P9A A;  1QXY A;  2GG9 A;  2BWS A;  1C22 A;  4FLI A;  2BWT A;  3I7M A;  2GG2 A;  4IEC A;  1N51 A;  4U73 A;  4ZWP A;  5CE6 A;  2GU6 A;  4FKC A;  5CLS A;  3D27 A;  4FLL A;  3IL0 A;  4IKU A;  3PKC A;  3ROR A;  2BWU A;  2NQ6 A;  2ZSG A;  1Y1N A;  4Z7M A;  2BN7 A;  3L24 A;  2DFI A;  2EVO A;  4MAT A;  2Q93 A;  5CNX A;  1MAT A;  3OVK A;  3L7G A;  1A16 A;  4IKT A;  2GG3 A;  2ADU A;  1W2M A;  1YW9 A;  4U6Z A;  3FMR A;  1JAW A;  3O5V A;  2GTX A;  1CHM A;  1WLR A;  5E5B A;  2BHC A;  2GGB A;  5D6E A;  2HOW A;  3PEB A;  4ZNG A;  1YVM A;  1BN5 A;  4U1B A;  5CDE A;  1B59 A;  2GG0 A;  4B28 A;  5CDL A;  5JFR A;  3Q6D A;  1BOA A;  2BH3 A;  2Q94 A;  4S2R P;  4FLK A;  2GU4 A;  4U70 A;  4RGZ 1;  4R60 A;  2GA2 A;  1XGS A;  1WN1 A;  1XNZ A;  4S00 A;  1WL9 A;  1C21 A;  3S6B A;  1XGO A;  4U6C A;  2G6P A;  4U6E A;  3OOO A;  4QR8 A;  1YW7 A;  2OAZ A;  2P99 A;  3IG4 A;  5JHU A;  1WKM A;  2MAT A;  4U6J A;  1QZY A;  2GU5 A;  4FLJ A;  1QXZ A;  3QOC A;  4FO7 A;  5CDV A;  2BWW A;  3FM3 A;  3PKE A;  5JI6 A;  3BIT A;  4A6V A;  3CB5 A;  2Q92 A;  2IW2 A;  5FCH A;  2GZ5 A;  1R5H A;  3MAT A;  1PV9 A;  4PV4 A;  3TAV A;  1WBQ A;  2BHD A;  4FO8 A;  2B3L A;  2BB7 A;  3IU7 A;  3PKB A;  1O0X A;  2B3K A;  2BHA A;  2EA2 A;  4U71 A;  3CB6 A;  1M35 A;  2BWV A;  1WL6 A;  2EVC A;  5D6F A;  1QXW A;  4U6W A;  3PKD A;  2BHB A;  4ZWU A;  2Q95 A;  4RZY A;  4ZWO A;  2OKN A;  2EVM A;  4IPA A;  2Q8K A;  2V6C A;  1KQ9 A;  3PN9 A;  2V3Y A;  5FCF A;  2EA4 A;  1C24 A;  2GGC A;  2GG5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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