5FCFA

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris, phosphate and mn bound
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Proline dipeptidase
publication title Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
pubmed doi rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
total genus 136
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5fcfA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5fcfA02
2OAZA 4ZWUA 2EVOA 4RZYA 3TB5A 2B3HA 2GU5A 4FUKA 2GG3A 1YW9A 1YW8A 3TAVA 3L24A 5CDVA 2B3LA 1C27A 1QXZA 1WL9A 2DFIA 4IDYA 2NQ7A 2G6PA 2Q95A 4FO8A 4U71A 4ZWOA 1QXYA 2GG0A 2B3KA 2V3YA 4U1BA 1YVMA 2V3ZA 3MATA 1BN5A 3FMRA 1XGSA 4IU6A 4U6CA 4FO7A 3BIPA 2GU6A 4R60A 4EGEA 2GG9A 2BWUA 5CIKA 3IG4A 5JFRA 1WKMA 2P9AA 1JAWA 1C24A 2V3XA 3I7MA 2BH3A 3PEBA 3CB5A 1WN1A 3IU9A 4IKRA 4IPAA 4JUQA 4QR8A 1WY2A 2BWTA 2HOWA 4S2RP 4FLJA 3PKAA 4U76A 4ZWPA 2EA4A 4IF7A 5CDLA 1YW7A 4A6WA 3D27A 1B6AA 5FCHA 1QZYA 2BWVA 3L7GA 3PKCA 3S6BA 4U70A 1XGNA 3OOOA 3BITA 4PNCA 5FCFA 1XNZA 4FLKA 2Q8KA 2GG8A 4RGZ1 2Q93A 1W7VA 4IECA 3FM3A 1WL6A 1MATA 5E5BA 4RZZA 2GG7A 4A6VA 2BWSA 2BHAA 4FLIA 1XGMA 4ZNGA 1M35A 4IKTA 3PN9A 2IW2A 3MR1A 4FLLA 4IKUA 1PV9A 3CB6A 2P99A 2BN7A 2EVCA 1BOAA 3PKEA 4U6WA 5CNXA 4FKCA 1R5GA 3RVAA 4U73A 5JHUA 4KM3A 4S2TP 1WLRA 1R58A 2BWXA 2GZ5A 3IU8A 2ADUA 4B28A 1CHMA 4S00A 3CTZA 1W2MA 2BHCA 5CE6A 2BWWA 3PKBA 5D6FA 2GA2A 2OKNA 2ZSGA 2GGBA 2GG5A 5CDEA 1C21A 1KQ9A 5CLSA 1C22A 4U6EA 2GG2A 2GGCA 1O0XA 3Q6DA 4S01A 4OOKA 4IKSA 1YJ3A 1Y1NA 2MATA 2BHBA 2Q96A 4Z7MA 1KQ0A 5E2CA 5JI6A 4U75A 4U6ZA 2P98A 3QOCA 1R5HA 2GU7A 2GTXA 2BB7A 2EA2A 1KP0A 2BWYA 2EVMA 3RORA 1QXWA 2NQ6A 2BHDA 4MATA 3FMQA 3O5VA 1B59A 3MX6A 1WBQA 1N51A 5D6EA 4HXXA 1XGOA 4U69A 2Q94A 3PKDA 4U6JA 3IU7A 2V6CA 3BIQA 2Q92A 1C23A 3OVKA 2GU4A 4PV4A 3IL0A 1A16A
chains in the Genus database with same CATH superfamily
2OAZA 4ZWUA 2EVOA 4RZYA 3TB5A 2B3HA 2GU5A 4FUKA 2GG3A 1YW9A 1YW8A 3TAVA 3L24A 5CDVA 2B3LA 1C27A 1QXZA 1WL9A 2DFIA 4IDYA 2NQ7A 2G6PA 2Q95A 4FO8A 4U71A 4ZWOA 1QXYA 2GG0A 2B3KA 2V3YA 4U1BA 1YVMA 2V3ZA 3MATA 1BN5A 3FMRA 1XGSA 4IU6A 4U6CA 4FO7A 3BIPA 2GU6A 4R60A 4EGEA 2GG9A 2BWUA 5CIKA 3IG4A 5JFRA 1WKMA 2P9AA 1JAWA 1C24A 2V3XA 3I7MA 2BH3A 3PEBA 3CB5A 1WN1A 3IU9A 4IKRA 4IPAA 4JUQA 4QR8A 1WY2A 2BWTA 2HOWA 4S2RP 4FLJA 3PKAA 4U76A 4ZWPA 2EA4A 4IF7A 5CDLA 1YW7A 4A6WA 3D27A 1B6AA 5FCHA 1QZYA 2BWVA 3L7GA 3PKCA 3S6BA 4U70A 1XGNA 3OOOA 3BITA 4PNCA 5FCFA 1XNZA 4FLKA 2Q8KA 2GG8A 4RGZ1 2Q93A 1W7VA 4IECA 3FM3A 1WL6A 1MATA 5E5BA 4RZZA 2GG7A 4A6VA 2BWSA 2BHAA 4FLIA 1XGMA 4ZNGA 1M35A 4IKTA 3PN9A 2IW2A 3MR1A 4FLLA 4IKUA 1PV9A 3CB6A 2P99A 2BN7A 2EVCA 1BOAA 3PKEA 4U6WA 5CNXA 4FKCA 1R5GA 3RVAA 4U73A 5JHUA 4KM3A 4S2TP 1WLRA 1R58A 2BWXA 2GZ5A 3IU8A 2ADUA 4B28A 1CHMA 4S00A 3CTZA 1W2MA 2BHCA 5CE6A 2BWWA 3PKBA 5D6FA 2GA2A 2OKNA 2ZSGA 2GGBA 2GG5A 5CDEA 1C21A 1KQ9A 5CLSA 1C22A 4U6EA 2GG2A 2GGCA 1O0XA 3Q6DA 4S01A 4OOKA 4IKSA 1YJ3A 1Y1NA 2MATA 2BHBA 2Q96A 4Z7MA 1KQ0A 5E2CA 5JI6A 4U75A 4U6ZA 2P98A 3QOCA 1R5HA 2GU7A 2GTXA 2BB7A 2EA2A 1KP0A 2BWYA 2EVMA 3RORA 1QXWA 2NQ6A 2BHDA 4MATA 3FMQA 3O5VA 1B59A 3MX6A 1WBQA 1N51A 5D6EA 4HXXA 1XGOA 4U69A 2Q94A 3PKDA 4U6JA 3IU7A 2V6CA 3BIQA 2Q92A 1C23A 3OVKA 2GU4A 4PV4A 3IL0A 1A16A
chains in the Genus database with same CATH topology
2OAZA 4ZWUA 2EVOA 4RZYA 3TB5A 2B3HA 2GU5A 4FUKA 2GG3A 1YW9A 1YW8A 3TAVA 3L24A 5CDVA 2B3LA 1C27A 1QXZA 1WL9A 2DFIA 4IDYA 2NQ7A 2G6PA 2Q95A 4FO8A 4U71A 4ZWOA 1QXYA 2GG0A 2B3KA 2V3YA 4U1BA 1YVMA 2V3ZA 3MATA 1BN5A 3FMRA 1XGSA 4IU6A 4U6CA 4FO7A 3BIPA 2GU6A 4R60A 4EGEA 2GG9A 2BWUA 5CIKA 3IG4A 5JFRA 1WKMA 2P9AA 1JAWA 1C24A 2V3XA 3I7MA 2BH3A 3PEBA 3CB5A 1WN1A 3IU9A 4IKRA 4IPAA 4JUQA 4QR8A 1WY2A 2BWTA 2HOWA 4S2RP 4FLJA 3PKAA 4U76A 4ZWPA 2EA4A 4IF7A 5CDLA 1YW7A 4A6WA 3D27A 1B6AA 5FCHA 1QZYA 2BWVA 3L7GA 3PKCA 3S6BA 4U70A 1XGNA 3OOOA 3BITA 4PNCA 5FCFA 1XNZA 4FLKA 2Q8KA 2GG8A 4RGZ1 2Q93A 1W7VA 4IECA 3FM3A 1WL6A 1MATA 5E5BA 4RZZA 2GG7A 4A6VA 2BWSA 2BHAA 4FLIA 1XGMA 4ZNGA 1M35A 4IKTA 3PN9A 2IW2A 3MR1A 4FLLA 4IKUA 1PV9A 3CB6A 2P99A 2BN7A 2EVCA 1BOAA 3PKEA 4U6WA 5CNXA 4FKCA 1R5GA 3RVAA 4U73A 5JHUA 4KM3A 4S2TP 1WLRA 1R58A 2BWXA 2GZ5A 3IU8A 2ADUA 4B28A 1CHMA 4S00A 3CTZA 1W2MA 2BHCA 5CE6A 2BWWA 3PKBA 5D6FA 2GA2A 2OKNA 2ZSGA 2GGBA 2GG5A 5CDEA 1C21A 1KQ9A 5CLSA 1C22A 4U6EA 2GG2A 2GGCA 1O0XA 3Q6DA 4S01A 4OOKA 4IKSA 1YJ3A 1Y1NA 2MATA 2BHBA 2Q96A 4Z7MA 1KQ0A 5E2CA 5JI6A 4U75A 4U6ZA 2P98A 3QOCA 1R5HA 2GU7A 2GTXA 2BB7A 2EA2A 1KP0A 2BWYA 2EVMA 3RORA 1QXWA 2NQ6A 2BHDA 4MATA 3FMQA 3O5VA 1B59A 3MX6A 1WBQA 1N51A 5D6EA 4HXXA 1XGOA 4U69A 2Q94A 3PKDA 4U6JA 3IU7A 2V6CA 3BIQA 2Q92A 1C23A 3OVKA 2GU4A 4PV4A 3IL0A 1A16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OAZ A;  4ZWU A;  2EVO A;  4RZY A;  3TB5 A;  2B3H A;  2GU5 A;  4FUK A;  2GG3 A;  1YW9 A;  1YW8 A;  3TAV A;  3L24 A;  5CDV A;  2B3L A;  1C27 A;  1QXZ A;  1WL9 A;  2DFI A;  4IDY A;  2NQ7 A;  2G6P A;  2Q95 A;  4FO8 A;  4U71 A;  4ZWO A;  1QXY A;  2GG0 A;  2B3K A;  2V3Y A;  4U1B A;  1YVM A;  2V3Z A;  3MAT A;  1BN5 A;  3FMR A;  1XGS A;  4IU6 A;  4U6C A;  4FO7 A;  3BIP A;  2GU6 A;  4R60 A;  4EGE A;  2GG9 A;  2BWU A;  5CIK A;  3IG4 A;  5JFR A;  1WKM A;  2P9A A;  1JAW A;  1C24 A;  2V3X A;  3I7M A;  2BH3 A;  3PEB A;  3CB5 A;  1WN1 A;  3IU9 A;  4IKR A;  4IPA A;  4JUQ A;  4QR8 A;  1WY2 A;  2BWT A;  2HOW A;  4S2R P;  4FLJ A;  3PKA A;  4U76 A;  4ZWP A;  2EA4 A;  4IF7 A;  5CDL A;  1YW7 A;  4A6W A;  3D27 A;  1B6A A;  5FCH A;  1QZY A;  2BWV A;  3L7G A;  3PKC A;  3S6B A;  4U70 A;  1XGN A;  3OOO A;  3BIT A;  4PNC A;  5FCF A;  1XNZ A;  4FLK A;  2Q8K A;  2GG8 A;  4RGZ 1;  2Q93 A;  1W7V A;  4IEC A;  3FM3 A;  1WL6 A;  1MAT A;  5E5B A;  4RZZ A;  2GG7 A;  4A6V A;  2BWS A;  2BHA A;  4FLI A;  1XGM A;  4ZNG A;  1M35 A;  4IKT A;  3PN9 A;  2IW2 A;  3MR1 A;  4FLL A;  4IKU A;  1PV9 A;  3CB6 A;  2P99 A;  2BN7 A;  2EVC A;  1BOA A;  3PKE A;  4U6W A;  5CNX A;  4FKC A;  1R5G A;  3RVA A;  4U73 A;  5JHU A;  4KM3 A;  4S2T P;  1WLR A;  1R58 A;  2BWX A;  2GZ5 A;  3IU8 A;  2ADU A;  4B28 A;  1CHM A;  4S00 A;  3CTZ A;  1W2M A;  2BHC A;  5CE6 A;  2BWW A;  3PKB A;  5D6F A;  2GA2 A;  2OKN A;  2ZSG A;  2GGB A;  2GG5 A;  5CDE A;  1C21 A;  1KQ9 A;  5CLS A;  1C22 A;  4U6E A;  2GG2 A;  2GGC A;  1O0X A;  3Q6D A;  4S01 A;  4OOK A;  4IKS A;  1YJ3 A;  1Y1N A;  2MAT A;  2BHB A;  2Q96 A;  4Z7M A;  1KQ0 A;  5E2C A;  5JI6 A;  4U75 A;  4U6Z A;  2P98 A;  3QOC A;  1R5H A;  2GU7 A;  2GTX A;  2BB7 A;  2EA2 A;  1KP0 A;  2BWY A;  2EVM A;  3ROR A;  1QXW A;  2NQ6 A;  2BHD A;  4MAT A;  3FMQ A;  3O5V A;  1B59 A;  3MX6 A;  1WBQ A;  1N51 A;  5D6E A;  4HXX A;  1XGO A;  4U69 A;  2Q94 A;  3PKD A;  4U6J A;  3IU7 A;  2V6C A;  3BIQ A;  2Q92 A;  1C23 A;  3OVK A;  2GU4 A;  4PV4 A;  3IL0 A;  1A16 A; 
#chains in the Genus database with same CATH topology
 2OAZ A;  4ZWU A;  2EVO A;  4RZY A;  3TB5 A;  2B3H A;  2GU5 A;  4FUK A;  2GG3 A;  1YW9 A;  1YW8 A;  3TAV A;  3L24 A;  5CDV A;  2B3L A;  1C27 A;  1QXZ A;  1WL9 A;  2DFI A;  4IDY A;  2NQ7 A;  2G6P A;  2Q95 A;  4FO8 A;  4U71 A;  4ZWO A;  1QXY A;  2GG0 A;  2B3K A;  2V3Y A;  4U1B A;  1YVM A;  2V3Z A;  3MAT A;  1BN5 A;  3FMR A;  1XGS A;  4IU6 A;  4U6C A;  4FO7 A;  3BIP A;  2GU6 A;  4R60 A;  4EGE A;  2GG9 A;  2BWU A;  5CIK A;  3IG4 A;  5JFR A;  1WKM A;  2P9A A;  1JAW A;  1C24 A;  2V3X A;  3I7M A;  2BH3 A;  3PEB A;  3CB5 A;  1WN1 A;  3IU9 A;  4IKR A;  4IPA A;  4JUQ A;  4QR8 A;  1WY2 A;  2BWT A;  2HOW A;  4S2R P;  4FLJ A;  3PKA A;  4U76 A;  4ZWP A;  2EA4 A;  4IF7 A;  5CDL A;  1YW7 A;  4A6W A;  3D27 A;  1B6A A;  5FCH A;  1QZY A;  2BWV A;  3L7G A;  3PKC A;  3S6B A;  4U70 A;  1XGN A;  3OOO A;  3BIT A;  4PNC A;  5FCF A;  1XNZ A;  4FLK A;  2Q8K A;  2GG8 A;  4RGZ 1;  2Q93 A;  1W7V A;  4IEC A;  3FM3 A;  1WL6 A;  1MAT A;  5E5B A;  4RZZ A;  2GG7 A;  4A6V A;  2BWS A;  2BHA A;  4FLI A;  1XGM A;  4ZNG A;  1M35 A;  4IKT A;  3PN9 A;  2IW2 A;  3MR1 A;  4FLL A;  4IKU A;  1PV9 A;  3CB6 A;  2P99 A;  2BN7 A;  2EVC A;  1BOA A;  3PKE A;  4U6W A;  5CNX A;  4FKC A;  1R5G A;  3RVA A;  4U73 A;  5JHU A;  4KM3 A;  4S2T P;  1WLR A;  1R58 A;  2BWX A;  2GZ5 A;  3IU8 A;  2ADU A;  4B28 A;  1CHM A;  4S00 A;  3CTZ A;  1W2M A;  2BHC A;  5CE6 A;  2BWW A;  3PKB A;  5D6F A;  2GA2 A;  2OKN A;  2ZSG A;  2GGB A;  2GG5 A;  5CDE A;  1C21 A;  1KQ9 A;  5CLS A;  1C22 A;  4U6E A;  2GG2 A;  2GGC A;  1O0X A;  3Q6D A;  4S01 A;  4OOK A;  4IKS A;  1YJ3 A;  1Y1N A;  2MAT A;  2BHB A;  2Q96 A;  4Z7M A;  1KQ0 A;  5E2C A;  5JI6 A;  4U75 A;  4U6Z A;  2P98 A;  3QOC A;  1R5H A;  2GU7 A;  2GTX A;  2BB7 A;  2EA2 A;  1KP0 A;  2BWY A;  2EVM A;  3ROR A;  1QXW A;  2NQ6 A;  2BHD A;  4MAT A;  3FMQ A;  3O5V A;  1B59 A;  3MX6 A;  1WBQ A;  1N51 A;  5D6E A;  4HXX A;  1XGO A;  4U69 A;  2Q94 A;  3PKD A;  4U6J A;  3IU7 A;  2V6C A;  3BIQ A;  2Q92 A;  1C23 A;  3OVK A;  2GU4 A;  4PV4 A;  3IL0 A;  1A16 A; 
#chains in the Genus database with same CATH homology
 2OAZ A;  4ZWU A;  2EVO A;  4RZY A;  3TB5 A;  2B3H A;  2GU5 A;  4FUK A;  2GG3 A;  1YW9 A;  1YW8 A;  3TAV A;  3L24 A;  5CDV A;  2B3L A;  1C27 A;  1QXZ A;  1WL9 A;  2DFI A;  4IDY A;  2NQ7 A;  2G6P A;  2Q95 A;  4FO8 A;  4U71 A;  4ZWO A;  1QXY A;  2GG0 A;  2B3K A;  2V3Y A;  4U1B A;  1YVM A;  2V3Z A;  3MAT A;  1BN5 A;  3FMR A;  1XGS A;  4IU6 A;  4U6C A;  4FO7 A;  3BIP A;  2GU6 A;  4R60 A;  4EGE A;  2GG9 A;  2BWU A;  5CIK A;  3IG4 A;  5JFR A;  1WKM A;  2P9A A;  1JAW A;  1C24 A;  2V3X A;  3I7M A;  2BH3 A;  3PEB A;  3CB5 A;  1WN1 A;  3IU9 A;  4IKR A;  4IPA A;  4JUQ A;  4QR8 A;  1WY2 A;  2BWT A;  2HOW A;  4S2R P;  4FLJ A;  3PKA A;  4U76 A;  4ZWP A;  2EA4 A;  4IF7 A;  5CDL A;  1YW7 A;  4A6W A;  3D27 A;  1B6A A;  5FCH A;  1QZY A;  2BWV A;  3L7G A;  3PKC A;  3S6B A;  4U70 A;  1XGN A;  3OOO A;  3BIT A;  4PNC A;  5FCF A;  1XNZ A;  4FLK A;  2Q8K A;  2GG8 A;  4RGZ 1;  2Q93 A;  1W7V A;  4IEC A;  3FM3 A;  1WL6 A;  1MAT A;  5E5B A;  4RZZ A;  2GG7 A;  4A6V A;  2BWS A;  2BHA A;  4FLI A;  1XGM A;  4ZNG A;  1M35 A;  4IKT A;  3PN9 A;  2IW2 A;  3MR1 A;  4FLL A;  4IKU A;  1PV9 A;  3CB6 A;  2P99 A;  2BN7 A;  2EVC A;  1BOA A;  3PKE A;  4U6W A;  5CNX A;  4FKC A;  1R5G A;  3RVA A;  4U73 A;  5JHU A;  4KM3 A;  4S2T P;  1WLR A;  1R58 A;  2BWX A;  2GZ5 A;  3IU8 A;  2ADU A;  4B28 A;  1CHM A;  4S00 A;  3CTZ A;  1W2M A;  2BHC A;  5CE6 A;  2BWW A;  3PKB A;  5D6F A;  2GA2 A;  2OKN A;  2ZSG A;  2GGB A;  2GG5 A;  5CDE A;  1C21 A;  1KQ9 A;  5CLS A;  1C22 A;  4U6E A;  2GG2 A;  2GGC A;  1O0X A;  3Q6D A;  4S01 A;  4OOK A;  4IKS A;  1YJ3 A;  1Y1N A;  2MAT A;  2BHB A;  2Q96 A;  4Z7M A;  1KQ0 A;  5E2C A;  5JI6 A;  4U75 A;  4U6Z A;  2P98 A;  3QOC A;  1R5H A;  2GU7 A;  2GTX A;  2BB7 A;  2EA2 A;  1KP0 A;  2BWY A;  2EVM A;  3ROR A;  1QXW A;  2NQ6 A;  2BHD A;  4MAT A;  3FMQ A;  3O5V A;  1B59 A;  3MX6 A;  1WBQ A;  1N51 A;  5D6E A;  4HXX A;  1XGO A;  4U69 A;  2Q94 A;  3PKD A;  4U6J A;  3IU7 A;  2V6C A;  3BIQ A;  2Q92 A;  1C23 A;  3OVK A;  2GU4 A;  4PV4 A;  3IL0 A;  1A16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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