3I7MA

N-terminal domain of xaa-pro dipeptidase from lactobacillus brevis.
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
134
structure length
134
Chain Sequence
TKLEQIQQWTAQHHASMTYLSNPKTIEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEVEVIKETGWQFPVIGYLDHENPWAMIADQVKQRHVNPEHVAIEKGQLQVARMEALAAQFSAPSFDLDITSFIEHM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray crystal structure of N-terminal domain of Xaa-Pro dipeptidase from Lactobacillus brevis.
rcsb
molecule tags Hydrolase
source organism Lactobacillus brevis
molecule keywords Xaa-Pro dipeptidase
total genus 39
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2009-07-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3i7mA00
3BIPA 5CE6A 2V3XA 1WL6A 3BITA 2BWYA 4R60A 2BWVA 5CNXA 2ZSGA 3I7MA 3L7GA 2BWSA 4QR8A 1WL9A 5E5BA 3CB5A 3OOOA 1WLRA 5FCHA 3O5VA 2V3YA 3BIQA 5CIKA 4ZNGA 2BWTA 1W7VA 4PV4A 1A16A 3L24A 2BHBA 3Q6DA 3PN9A 4FKCA 2BH3A 3IG4A 4S00A 1M35A 5CDVA 4S2RP 3OVKA 1WY2A 2IW2A 4S2TP 3RVAA 4RZZA 2BHDA 2HOWA 4RZYA 1PV9A 5E2CA 5CDLA 1N51A 4EGEA 3CB6A 4S01A 3PEBA 4B28A 4ZWPA 3IL0A 1W2MA 2BHCA 4RGZ1 3QOCA 5CDEA 1WBQA 2BN7A 4ZWOA 2BHAA 3CTZA 1JAWA 1CHMA 4ZWUA 2BWWA 2V3ZA 5FCFA 1WN1A 2BWUA 2OKNA 2BWXA 1KP0A
chains in the Genus database with same CATH superfamily
3BIPA 5CE6A 2V3XA 1WL6A 3BITA 2BWYA 4R60A 2BWVA 5CNXA 2ZSGA 3I7MA 3L7GA 2BWSA 4QR8A 1WL9A 5E5BA 3CB5A 3OOOA 1WLRA 5FCHA 3O5VA 2V3YA 3BIQA 5CIKA 4ZNGA 2BWTA 1W7VA 4PV4A 1A16A 3L24A 2BHBA 3Q6DA 3PN9A 4FKCA 2BH3A 3IG4A 4S00A 1M35A 5CDVA 4S2RP 3OVKA 1WY2A 2IW2A 4S2TP 3RVAA 4RZZA 2BHDA 2HOWA 4RZYA 1PV9A 5E2CA 5CDLA 1N51A 4EGEA 3CB6A 4S01A 3PEBA 4B28A 4ZWPA 3IL0A 1W2MA 2BHCA 4RGZ1 3QOCA 5CDEA 1WBQA 2BN7A 4ZWOA 2BHAA 3CTZA 1JAWA 1CHMA 4ZWUA 2BWWA 2V3ZA 5FCFA 1WN1A 2BWUA 2OKNA 2BWXA 1KP0A
chains in the Genus database with same CATH topology
3BIPA 5CE6A 2V3XA 1WL6A 3BITA 2BWYA 4R60A 2BWVA 5CNXA 2ZSGA 3I7MA 3L7GA 2BWSA 4QR8A 1WL9A 5E5BA 3CB5A 3OOOA 1WLRA 5FCHA 3O5VA 2V3YA 3BIQA 5CIKA 4ZNGA 2BWTA 1W7VA 4PV4A 1A16A 3L24A 2BHBA 3Q6DA 3PN9A 4FKCA 2BH3A 3IG4A 4S00A 1M35A 5CDVA 4S2RP 3OVKA 1WY2A 2IW2A 4S2TP 3RVAA 4RZZA 2BHDA 2HOWA 4RZYA 1PV9A 5E2CA 5CDLA 1N51A 4EGEA 3CB6A 4S01A 3PEBA 4B28A 4ZWPA 3IL0A 1W2MA 2BHCA 4RGZ1 3QOCA 5CDEA 1WBQA 2BN7A 4ZWOA 2BHAA 3CTZA 1JAWA 1CHMA 4ZWUA 2BWWA 2V3ZA 5FCFA 1WN1A 2BWUA 2OKNA 2BWXA 1KP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BIP A;  5CE6 A;  2V3X A;  1WL6 A;  3BIT A;  2BWY A;  4R60 A;  2BWV A;  5CNX A;  2ZSG A;  3I7M A;  3L7G A;  2BWS A;  4QR8 A;  1WL9 A;  5E5B A;  3CB5 A;  3OOO A;  1WLR A;  5FCH A;  3O5V A;  2V3Y A;  3BIQ A;  5CIK A;  4ZNG A;  2BWT A;  1W7V A;  4PV4 A;  1A16 A;  3L24 A;  2BHB A;  3Q6D A;  3PN9 A;  4FKC A;  2BH3 A;  3IG4 A;  4S00 A;  1M35 A;  5CDV A;  4S2R P;  3OVK A;  1WY2 A;  2IW2 A;  4S2T P;  3RVA A;  4RZZ A;  2BHD A;  2HOW A;  4RZY A;  1PV9 A;  5E2C A;  5CDL A;  1N51 A;  4EGE A;  3CB6 A;  4S01 A;  3PEB A;  4B28 A;  4ZWP A;  3IL0 A;  1W2M A;  2BHC A;  4RGZ 1;  3QOC A;  5CDE A;  1WBQ A;  2BN7 A;  4ZWO A;  2BHA A;  3CTZ A;  1JAW A;  1CHM A;  4ZWU A;  2BWW A;  2V3Z A;  5FCF A;  1WN1 A;  2BWU A;  2OKN A;  2BWX A;  1KP0 A; 
#chains in the Genus database with same CATH topology
 3BIP A;  5CE6 A;  2V3X A;  1WL6 A;  3BIT A;  2BWY A;  4R60 A;  2BWV A;  5CNX A;  2ZSG A;  3I7M A;  3L7G A;  2BWS A;  4QR8 A;  1WL9 A;  5E5B A;  3CB5 A;  3OOO A;  1WLR A;  5FCH A;  3O5V A;  2V3Y A;  3BIQ A;  5CIK A;  4ZNG A;  2BWT A;  1W7V A;  4PV4 A;  1A16 A;  3L24 A;  2BHB A;  3Q6D A;  3PN9 A;  4FKC A;  2BH3 A;  3IG4 A;  4S00 A;  1M35 A;  5CDV A;  4S2R P;  3OVK A;  1WY2 A;  2IW2 A;  4S2T P;  3RVA A;  4RZZ A;  2BHD A;  2HOW A;  4RZY A;  1PV9 A;  5E2C A;  5CDL A;  1N51 A;  4EGE A;  3CB6 A;  4S01 A;  3PEB A;  4B28 A;  4ZWP A;  3IL0 A;  1W2M A;  2BHC A;  4RGZ 1;  3QOC A;  5CDE A;  1WBQ A;  2BN7 A;  4ZWO A;  2BHA A;  3CTZ A;  1JAW A;  1CHM A;  4ZWU A;  2BWW A;  2V3Z A;  5FCF A;  1WN1 A;  2BWU A;  2OKN A;  2BWX A;  1KP0 A; 
#chains in the Genus database with same CATH homology
 3BIP A;  5CE6 A;  2V3X A;  1WL6 A;  3BIT A;  2BWY A;  4R60 A;  2BWV A;  5CNX A;  2ZSG A;  3I7M A;  3L7G A;  2BWS A;  4QR8 A;  1WL9 A;  5E5B A;  3CB5 A;  3OOO A;  1WLR A;  5FCH A;  3O5V A;  2V3Y A;  3BIQ A;  5CIK A;  4ZNG A;  2BWT A;  1W7V A;  4PV4 A;  1A16 A;  3L24 A;  2BHB A;  3Q6D A;  3PN9 A;  4FKC A;  2BH3 A;  3IG4 A;  4S00 A;  1M35 A;  5CDV A;  4S2R P;  3OVK A;  1WY2 A;  2IW2 A;  4S2T P;  3RVA A;  4RZZ A;  2BHD A;  2HOW A;  4RZY A;  1PV9 A;  5E2C A;  5CDL A;  1N51 A;  4EGE A;  3CB6 A;  4S01 A;  3PEB A;  4B28 A;  4ZWP A;  3IL0 A;  1W2M A;  2BHC A;  4RGZ 1;  3QOC A;  5CDE A;  1WBQ A;  2BN7 A;  4ZWO A;  2BHA A;  3CTZ A;  1JAW A;  1CHM A;  4ZWU A;  2BWW A;  2V3Z A;  5FCF A;  1WN1 A;  2BWU A;  2OKN A;  2BWX A;  1KP0 A; 
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