3IL0A

The crystal structure of the aminopeptidase p,xaa-pro aminopeptidase from streptococcus thermophilus
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
128
structure length
128
Chain Sequence
NAMQRRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTNATVFITKNRRLFLTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVDKLETIGFDNQVSFAYYQALQAIFEGYTLSPQTNFMEELRM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (0-15)AH2 (25-32)S1 (19-22)EMPTYS2 (39-44)TIV1 (36-39)S3 (48-52)TIV3 (72-75)AH4 (75-86)S5 (90-94)S6 (113-117)TI3 (94-97)AH5 (99-109)TII1 (109-112)TIV4 (117-120)AH6 (120-125)TI1 (44-47)TI2 (53-56)AH3 (56-63)S4 (68-71)TIV2 (64-67)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Streptococcus thermophilus
publication title The crystal structure of the aminopeptidase P,XAA-pro aminopeptidase from Streptococcus thermophilus
rcsb
molecule keywords Aminopeptidase P; XAA-pro aminopeptidase
total genus 40
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3il0A00
2BWSA 3BITA 3PN9A 5CDEA 2BN7A 3Q6DA 1WBQA 2V3YA 1KP0A 3I7MA 3OVKA 3RVAA 1WN1A 2BH3A 5CNXA 2ZSGA 1PV9A 1N51A 2BWWA 4EGEA 1WL9A 3QOCA 4S00A 1M35A 4PV4A 1JAWA 4ZWOA 3BIPA 3PEBA 4RZZA 4ZNGA 3BIQA 1A16A 2BWUA 2BWTA 2BWVA 2BHAA 4S2TP 3O5VA 5CDVA 1CHMA 2IW2A 3CB5A 4RGZ1 4S2RP 2HOWA 4FKCA 2BWYA 2BWXA 3L24A 5CE6A 1WLRA 2V3ZA 4RZYA 5FCHA 4B28A 4ZWPA 4ZWUA 3OOOA 2BHDA 3IL0A 4QR8A 1WY2A 5CDLA 5E2CA 2BHBA 2BHCA 4R60A 2V3XA 3L7GA 4S01A 3CB6A 5E5BA 2OKNA 5FCFA 1W7VA 3IG4A 3CTZA 5CIKA 1WL6A 1W2MA
chains in the Genus database with same CATH superfamily
2BWSA 3BITA 3PN9A 5CDEA 2BN7A 3Q6DA 1WBQA 2V3YA 1KP0A 3I7MA 3OVKA 3RVAA 1WN1A 2BH3A 5CNXA 2ZSGA 1PV9A 1N51A 2BWWA 4EGEA 1WL9A 3QOCA 4S00A 1M35A 4PV4A 1JAWA 4ZWOA 3BIPA 3PEBA 4RZZA 4ZNGA 3BIQA 1A16A 2BWUA 2BWTA 2BWVA 2BHAA 4S2TP 3O5VA 5CDVA 1CHMA 2IW2A 3CB5A 4RGZ1 4S2RP 2HOWA 4FKCA 2BWYA 2BWXA 3L24A 5CE6A 1WLRA 2V3ZA 4RZYA 5FCHA 4B28A 4ZWPA 4ZWUA 3OOOA 2BHDA 3IL0A 4QR8A 1WY2A 5CDLA 5E2CA 2BHBA 2BHCA 4R60A 2V3XA 3L7GA 4S01A 3CB6A 5E5BA 2OKNA 5FCFA 1W7VA 3IG4A 3CTZA 5CIKA 1WL6A 1W2MA
chains in the Genus database with same CATH topology
2BWSA 3BITA 3PN9A 5CDEA 2BN7A 3Q6DA 1WBQA 2V3YA 1KP0A 3I7MA 3OVKA 3RVAA 1WN1A 2BH3A 5CNXA 2ZSGA 1PV9A 1N51A 2BWWA 4EGEA 1WL9A 3QOCA 4S00A 1M35A 4PV4A 1JAWA 4ZWOA 3BIPA 3PEBA 4RZZA 4ZNGA 3BIQA 1A16A 2BWUA 2BWTA 2BWVA 2BHAA 4S2TP 3O5VA 5CDVA 1CHMA 2IW2A 3CB5A 4RGZ1 4S2RP 2HOWA 4FKCA 2BWYA 2BWXA 3L24A 5CE6A 1WLRA 2V3ZA 4RZYA 5FCHA 4B28A 4ZWPA 4ZWUA 3OOOA 2BHDA 3IL0A 4QR8A 1WY2A 5CDLA 5E2CA 2BHBA 2BHCA 4R60A 2V3XA 3L7GA 4S01A 3CB6A 5E5BA 2OKNA 5FCFA 1W7VA 3IG4A 3CTZA 5CIKA 1WL6A 1W2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWS A;  3BIT A;  3PN9 A;  5CDE A;  2BN7 A;  3Q6D A;  1WBQ A;  2V3Y A;  1KP0 A;  3I7M A;  3OVK A;  3RVA A;  1WN1 A;  2BH3 A;  5CNX A;  2ZSG A;  1PV9 A;  1N51 A;  2BWW A;  4EGE A;  1WL9 A;  3QOC A;  4S00 A;  1M35 A;  4PV4 A;  1JAW A;  4ZWO A;  3BIP A;  3PEB A;  4RZZ A;  4ZNG A;  3BIQ A;  1A16 A;  2BWU A;  2BWT A;  2BWV A;  2BHA A;  4S2T P;  3O5V A;  5CDV A;  1CHM A;  2IW2 A;  3CB5 A;  4RGZ 1;  4S2R P;  2HOW A;  4FKC A;  2BWY A;  2BWX A;  3L24 A;  5CE6 A;  1WLR A;  2V3Z A;  4RZY A;  5FCH A;  4B28 A;  4ZWP A;  4ZWU A;  3OOO A;  2BHD A;  3IL0 A;  4QR8 A;  1WY2 A;  5CDL A;  5E2C A;  2BHB A;  2BHC A;  4R60 A;  2V3X A;  3L7G A;  4S01 A;  3CB6 A;  5E5B A;  2OKN A;  5FCF A;  1W7V A;  3IG4 A;  3CTZ A;  5CIK A;  1WL6 A;  1W2M A; 
#chains in the Genus database with same CATH topology
 2BWS A;  3BIT A;  3PN9 A;  5CDE A;  2BN7 A;  3Q6D A;  1WBQ A;  2V3Y A;  1KP0 A;  3I7M A;  3OVK A;  3RVA A;  1WN1 A;  2BH3 A;  5CNX A;  2ZSG A;  1PV9 A;  1N51 A;  2BWW A;  4EGE A;  1WL9 A;  3QOC A;  4S00 A;  1M35 A;  4PV4 A;  1JAW A;  4ZWO A;  3BIP A;  3PEB A;  4RZZ A;  4ZNG A;  3BIQ A;  1A16 A;  2BWU A;  2BWT A;  2BWV A;  2BHA A;  4S2T P;  3O5V A;  5CDV A;  1CHM A;  2IW2 A;  3CB5 A;  4RGZ 1;  4S2R P;  2HOW A;  4FKC A;  2BWY A;  2BWX A;  3L24 A;  5CE6 A;  1WLR A;  2V3Z A;  4RZY A;  5FCH A;  4B28 A;  4ZWP A;  4ZWU A;  3OOO A;  2BHD A;  3IL0 A;  4QR8 A;  1WY2 A;  5CDL A;  5E2C A;  2BHB A;  2BHC A;  4R60 A;  2V3X A;  3L7G A;  4S01 A;  3CB6 A;  5E5B A;  2OKN A;  5FCF A;  1W7V A;  3IG4 A;  3CTZ A;  5CIK A;  1WL6 A;  1W2M A; 
#chains in the Genus database with same CATH homology
 2BWS A;  3BIT A;  3PN9 A;  5CDE A;  2BN7 A;  3Q6D A;  1WBQ A;  2V3Y A;  1KP0 A;  3I7M A;  3OVK A;  3RVA A;  1WN1 A;  2BH3 A;  5CNX A;  2ZSG A;  1PV9 A;  1N51 A;  2BWW A;  4EGE A;  1WL9 A;  3QOC A;  4S00 A;  1M35 A;  4PV4 A;  1JAW A;  4ZWO A;  3BIP A;  3PEB A;  4RZZ A;  4ZNG A;  3BIQ A;  1A16 A;  2BWU A;  2BWT A;  2BWV A;  2BHA A;  4S2T P;  3O5V A;  5CDV A;  1CHM A;  2IW2 A;  3CB5 A;  4RGZ 1;  4S2R P;  2HOW A;  4FKC A;  2BWY A;  2BWX A;  3L24 A;  5CE6 A;  1WLR A;  2V3Z A;  4RZY A;  5FCH A;  4B28 A;  4ZWP A;  4ZWU A;  3OOO A;  2BHD A;  3IL0 A;  4QR8 A;  1WY2 A;  5CDL A;  5E2C A;  2BHB A;  2BHC A;  4R60 A;  2V3X A;  3L7G A;  4S01 A;  3CB6 A;  5E5B A;  2OKN A;  5FCF A;  1W7V A;  3IG4 A;  3CTZ A;  5CIK A;  1WL6 A;  1W2M A; 
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