3IL0A

The crystal structure of the aminopeptidase p,xaa-pro aminopeptidase from streptococcus thermophilus
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
128
structure length
128
Chain Sequence
NAMQRRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTNATVFITKNRRLFLTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVDKLETIGFDNQVSFAYYQALQAIFEGYTLSPQTNFMEELRM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (0-15)AH2 (25-32)S1 (19-22)EMPTYS2 (39-44)TIV1 (36-39)S3 (48-52)TIV3 (72-75)AH4 (75-86)S5 (90-94)S6 (113-117)TI3 (94-97)AH5 (99-109)TII1 (109-112)TIV4 (117-120)AH6 (120-125)TI1 (44-47)TI2 (53-56)AH3 (56-63)S4 (68-71)TIV2 (64-67)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Streptococcus thermophilus
publication title The crystal structure of the aminopeptidase P,XAA-pro aminopeptidase from Streptococcus thermophilus
rcsb
molecule keywords Aminopeptidase P; XAA-pro aminopeptidase
total genus 40
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3il0A00
3BIQA 2OKNA 3CB6A 3IG4A 2BH3A 3BITA 2BWSA 1WLRA 1KP0A 5CNXA 4EGEA 2ZSGA 4S2TP 1W7VA 5FCHA 5CDLA 3Q6DA 4PV4A 1WL6A 3BIPA 5CE6A 2HOWA 2BWYA 1CHMA 4FKCA 4ZWOA 3PN9A 2BHCA 3QOCA 2BHAA 1WN1A 1JAWA 4R60A 2V3XA 1A16A 1WBQA 4RGZ1 2V3ZA 1WL9A 2BWVA 3CTZA 3L7GA 2BHDA 3PEBA 3CB5A 4ZNGA 2BHBA 4QR8A 2BWUA 2BWTA 2BWXA 2IW2A 1WY2A 5FCFA 4ZWUA 2BWWA 5CDEA 5E5BA 4S01A 3IL0A 5CDVA 4S2RP 4ZWPA 3L24A 4B28A 3OVKA 5E2CA 4S00A 3OOOA 2BN7A 4RZYA 1W2MA 2V3YA 3O5VA 1N51A 3I7MA 3RVAA 4RZZA 1M35A 1PV9A 5CIKA
chains in the Genus database with same CATH superfamily
3BIQA 2OKNA 3CB6A 3IG4A 2BH3A 3BITA 2BWSA 1WLRA 1KP0A 5CNXA 4EGEA 2ZSGA 4S2TP 1W7VA 5FCHA 5CDLA 3Q6DA 4PV4A 1WL6A 3BIPA 5CE6A 2HOWA 2BWYA 1CHMA 4FKCA 4ZWOA 3PN9A 2BHCA 3QOCA 2BHAA 1WN1A 1JAWA 4R60A 2V3XA 1A16A 1WBQA 4RGZ1 2V3ZA 1WL9A 2BWVA 3CTZA 3L7GA 2BHDA 3PEBA 3CB5A 4ZNGA 2BHBA 4QR8A 2BWUA 2BWTA 2BWXA 2IW2A 1WY2A 5FCFA 4ZWUA 2BWWA 5CDEA 5E5BA 4S01A 3IL0A 5CDVA 4S2RP 4ZWPA 3L24A 4B28A 3OVKA 5E2CA 4S00A 3OOOA 2BN7A 4RZYA 1W2MA 2V3YA 3O5VA 1N51A 3I7MA 3RVAA 4RZZA 1M35A 1PV9A 5CIKA
chains in the Genus database with same CATH topology
3BIQA 2OKNA 3CB6A 3IG4A 2BH3A 3BITA 2BWSA 1WLRA 1KP0A 5CNXA 4EGEA 2ZSGA 4S2TP 1W7VA 5FCHA 5CDLA 3Q6DA 4PV4A 1WL6A 3BIPA 5CE6A 2HOWA 2BWYA 1CHMA 4FKCA 4ZWOA 3PN9A 2BHCA 3QOCA 2BHAA 1WN1A 1JAWA 4R60A 2V3XA 1A16A 1WBQA 4RGZ1 2V3ZA 1WL9A 2BWVA 3CTZA 3L7GA 2BHDA 3PEBA 3CB5A 4ZNGA 2BHBA 4QR8A 2BWUA 2BWTA 2BWXA 2IW2A 1WY2A 5FCFA 4ZWUA 2BWWA 5CDEA 5E5BA 4S01A 3IL0A 5CDVA 4S2RP 4ZWPA 3L24A 4B28A 3OVKA 5E2CA 4S00A 3OOOA 2BN7A 4RZYA 1W2MA 2V3YA 3O5VA 1N51A 3I7MA 3RVAA 4RZZA 1M35A 1PV9A 5CIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BIQ A;  2OKN A;  3CB6 A;  3IG4 A;  2BH3 A;  3BIT A;  2BWS A;  1WLR A;  1KP0 A;  5CNX A;  4EGE A;  2ZSG A;  4S2T P;  1W7V A;  5FCH A;  5CDL A;  3Q6D A;  4PV4 A;  1WL6 A;  3BIP A;  5CE6 A;  2HOW A;  2BWY A;  1CHM A;  4FKC A;  4ZWO A;  3PN9 A;  2BHC A;  3QOC A;  2BHA A;  1WN1 A;  1JAW A;  4R60 A;  2V3X A;  1A16 A;  1WBQ A;  4RGZ 1;  2V3Z A;  1WL9 A;  2BWV A;  3CTZ A;  3L7G A;  2BHD A;  3PEB A;  3CB5 A;  4ZNG A;  2BHB A;  4QR8 A;  2BWU A;  2BWT A;  2BWX A;  2IW2 A;  1WY2 A;  5FCF A;  4ZWU A;  2BWW A;  5CDE A;  5E5B A;  4S01 A;  3IL0 A;  5CDV A;  4S2R P;  4ZWP A;  3L24 A;  4B28 A;  3OVK A;  5E2C A;  4S00 A;  3OOO A;  2BN7 A;  4RZY A;  1W2M A;  2V3Y A;  3O5V A;  1N51 A;  3I7M A;  3RVA A;  4RZZ A;  1M35 A;  1PV9 A;  5CIK A; 
#chains in the Genus database with same CATH topology
 3BIQ A;  2OKN A;  3CB6 A;  3IG4 A;  2BH3 A;  3BIT A;  2BWS A;  1WLR A;  1KP0 A;  5CNX A;  4EGE A;  2ZSG A;  4S2T P;  1W7V A;  5FCH A;  5CDL A;  3Q6D A;  4PV4 A;  1WL6 A;  3BIP A;  5CE6 A;  2HOW A;  2BWY A;  1CHM A;  4FKC A;  4ZWO A;  3PN9 A;  2BHC A;  3QOC A;  2BHA A;  1WN1 A;  1JAW A;  4R60 A;  2V3X A;  1A16 A;  1WBQ A;  4RGZ 1;  2V3Z A;  1WL9 A;  2BWV A;  3CTZ A;  3L7G A;  2BHD A;  3PEB A;  3CB5 A;  4ZNG A;  2BHB A;  4QR8 A;  2BWU A;  2BWT A;  2BWX A;  2IW2 A;  1WY2 A;  5FCF A;  4ZWU A;  2BWW A;  5CDE A;  5E5B A;  4S01 A;  3IL0 A;  5CDV A;  4S2R P;  4ZWP A;  3L24 A;  4B28 A;  3OVK A;  5E2C A;  4S00 A;  3OOO A;  2BN7 A;  4RZY A;  1W2M A;  2V3Y A;  3O5V A;  1N51 A;  3I7M A;  3RVA A;  4RZZ A;  1M35 A;  1PV9 A;  5CIK A; 
#chains in the Genus database with same CATH homology
 3BIQ A;  2OKN A;  3CB6 A;  3IG4 A;  2BH3 A;  3BIT A;  2BWS A;  1WLR A;  1KP0 A;  5CNX A;  4EGE A;  2ZSG A;  4S2T P;  1W7V A;  5FCH A;  5CDL A;  3Q6D A;  4PV4 A;  1WL6 A;  3BIP A;  5CE6 A;  2HOW A;  2BWY A;  1CHM A;  4FKC A;  4ZWO A;  3PN9 A;  2BHC A;  3QOC A;  2BHA A;  1WN1 A;  1JAW A;  4R60 A;  2V3X A;  1A16 A;  1WBQ A;  4RGZ 1;  2V3Z A;  1WL9 A;  2BWV A;  3CTZ A;  3L7G A;  2BHD A;  3PEB A;  3CB5 A;  4ZNG A;  2BHB A;  4QR8 A;  2BWU A;  2BWT A;  2BWX A;  2IW2 A;  1WY2 A;  5FCF A;  4ZWU A;  2BWW A;  5CDE A;  5E5B A;  4S01 A;  3IL0 A;  5CDV A;  4S2R P;  4ZWP A;  3L24 A;  4B28 A;  3OVK A;  5E2C A;  4S00 A;  3OOO A;  2BN7 A;  4RZY A;  1W2M A;  2V3Y A;  3O5V A;  1N51 A;  3I7M A;  3RVA A;  4RZZ A;  1M35 A;  1PV9 A;  5CIK A; 
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