3OOO | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	132
structure length	132
Chain Sequence	AMSKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFDGHFENLTPYIQNMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Streptococcus agalactiae
publication title	The structure of a proline dipeptidase from Streptococcus agalactiae 2603V rcsb
molecule keywords	Proline dipeptidase
total genus	42
structure length	132
sequence length	132
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-08-31

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.350.10	Alpha Beta	3-Layer(aba) Sandwich	Creatine Amidinohydrolase; Chain A, domain 1	Creatinase/prolidase N-terminal domain	3oooA00

2OKNA 3L7GA 3RVAA 2BWSA 4ZNGA 5CDLA 4QR8A 1CHMA 3PN9A 4ZWPA 3CB5A 3IG4A 2BH3A 2ZSGA 4S2RP 5CIKA 3OOOA 2IW2A 4FKCA 2BWTA 4RZYA 3I7MA 5CNXA 1WL6A 5CE6A 2V3ZA 1W7VA 2BHDA 2BWYA 2V3XA 1WN1A 4S01A 2BHCA 2BHBA 3BIPA 3CTZA 4RGZ1 2BHAA 4B28A 4ZWUA 3Q6DA 3IL0A 2BWWA 2BN7A 4S00A 4ZWOA 1W2MA 3CB6A 1A16A 4PV4A 3PEBA 3L24A 2BWXA 2BWUA 1WY2A 1WBQA 3BIQA 5E2CA 1PV9A 4S2TP 1N51A 4R60A 5FCHA 1M35A 1KP0A 1WL9A 5FCFA 4RZZA 5CDEA 2V3YA 5CDVA 5E5BA 3OVKA 2HOWA 1WLRA 2BWVA 1JAWA 3O5VA 3BITA 3QOCA 4EGEA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2OKN A;  3L7G A;  3RVA A;  2BWS A;  4ZNG A;  5CDL A;  4QR8 A;  1CHM A;  3PN9 A;  4ZWP A;  3CB5 A;  3IG4 A;  2BH3 A;  2ZSG A;  4S2R P;  5CIK A;  3OOO A;  2IW2 A;  4FKC A;  2BWT A;  4RZY A;  3I7M A;  5CNX A;  1WL6 A;  5CE6 A;  2V3Z A;  1W7V A;  2BHD A;  2BWY A;  2V3X A;  1WN1 A;  4S01 A;  2BHC A;  2BHB A;  3BIP A;  3CTZ A;  4RGZ 1;  2BHA A;  4B28 A;  4ZWU A;  3Q6D A;  3IL0 A;  2BWW A;  2BN7 A;  4S00 A;  4ZWO A;  1W2M A;  3CB6 A;  1A16 A;  4PV4 A;  3PEB A;  3L24 A;  2BWX A;  2BWU A;  1WY2 A;  1WBQ A;  3BIQ A;  5E2C A;  1PV9 A;  4S2T P;  1N51 A;  4R60 A;  5FCH A;  1M35 A;  1KP0 A;  1WL9 A;  5FCF A;  4RZZ A;  5CDE A;  2V3Y A;  5CDV A;  5E5B A;  3OVK A;  2HOW A;  1WLR A;  2BWV A;  1JAW A;  3O5V A;  3BIT A;  3QOC A;  4EGE A; 
#chains in the Genus database with same CATH topology
 2OKN A;  3L7G A;  3RVA A;  2BWS A;  4ZNG A;  5CDL A;  4QR8 A;  1CHM A;  3PN9 A;  4ZWP A;  3CB5 A;  3IG4 A;  2BH3 A;  2ZSG A;  4S2R P;  5CIK A;  3OOO A;  2IW2 A;  4FKC A;  2BWT A;  4RZY A;  3I7M A;  5CNX A;  1WL6 A;  5CE6 A;  2V3Z A;  1W7V A;  2BHD A;  2BWY A;  2V3X A;  1WN1 A;  4S01 A;  2BHC A;  2BHB A;  3BIP A;  3CTZ A;  4RGZ 1;  2BHA A;  4B28 A;  4ZWU A;  3Q6D A;  3IL0 A;  2BWW A;  2BN7 A;  4S00 A;  4ZWO A;  1W2M A;  3CB6 A;  1A16 A;  4PV4 A;  3PEB A;  3L24 A;  2BWX A;  2BWU A;  1WY2 A;  1WBQ A;  3BIQ A;  5E2C A;  1PV9 A;  4S2T P;  1N51 A;  4R60 A;  5FCH A;  1M35 A;  1KP0 A;  1WL9 A;  5FCF A;  4RZZ A;  5CDE A;  2V3Y A;  5CDV A;  5E5B A;  3OVK A;  2HOW A;  1WLR A;  2BWV A;  1JAW A;  3O5V A;  3BIT A;  3QOC A;  4EGE A; 
#chains in the Genus database with same CATH homology
 2OKN A;  3L7G A;  3RVA A;  2BWS A;  4ZNG A;  5CDL A;  4QR8 A;  1CHM A;  3PN9 A;  4ZWP A;  3CB5 A;  3IG4 A;  2BH3 A;  2ZSG A;  4S2R P;  5CIK A;  3OOO A;  2IW2 A;  4FKC A;  2BWT A;  4RZY A;  3I7M A;  5CNX A;  1WL6 A;  5CE6 A;  2V3Z A;  1W7V A;  2BHD A;  2BWY A;  2V3X A;  1WN1 A;  4S01 A;  2BHC A;  2BHB A;  3BIP A;  3CTZ A;  4RGZ 1;  2BHA A;  4B28 A;  4ZWU A;  3Q6D A;  3IL0 A;  2BWW A;  2BN7 A;  4S00 A;  4ZWO A;  1W2M A;  3CB6 A;  1A16 A;  4PV4 A;  3PEB A;  3L24 A;  2BWX A;  2BWU A;  1WY2 A;  1WBQ A;  3BIQ A;  5E2C A;  1PV9 A;  4S2T P;  1N51 A;  4R60 A;  5FCH A;  1M35 A;  1KP0 A;  1WL9 A;  5FCF A;  4RZZ A;  5CDE A;  2V3Y A;  5CDV A;  5E5B A;  3OVK A;  2HOW A;  1WLR A;  2BWV A;  1JAW A;  3O5V A;  3BIT A;  3QOC A;  4EGE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3OOOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN