3PN9A

Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
SNAMSKLQQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFETAEFDNLTPRIQRMRLIK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-14)AH2 (24-31)AH6 (124-130)S1 (18-21)TI1 (47-50)S2 (43-47)EMPTYTI4 (101-104)AH3 (61-67)TII'1 (37-40)TI2 (76-79)S3 (53-57)3H1 (58-60)AH4 (81-88)S4 (72-75)AH5 (106-115)TI5 (116-119)O1 (90-92)S6 (120-123)TI3 (100-103)O2 (130-133)S5 (96-99)Updating...
connected with : NaN
publication title Crystal structure of a proline dipeptidase from streptococcus pneumoniae tigr4
rcsb
molecule tags Hydrolase
source organism Streptococcus pneumoniae
molecule keywords Proline dipeptidase
total genus 45
structure length 138
sequence length 138
chains with identical sequence B, C, D
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2010-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3pn9A00
3OVKA 3OOOA 3PN9A 3IG4A 1PV9A 4S2RP 4RZZA 5CDEA 2OKNA 2HOWA 5FCFA 2BWYA 1W7VA 3BITA 3L7GA 4ZWOA 3BIQA 3I7MA 4B28A 1M35A 3L24A 5E5BA 2BHCA 1WY2A 1WLRA 3PEBA 2BHAA 2BHDA 3RVAA 2V3YA 2ZSGA 5E2CA 4ZWPA 2BWVA 5CDLA 2V3ZA 4QR8A 3CB5A 4S00A 5CIKA 1KP0A 3O5VA 4ZNGA 5CDVA 5FCHA 1N51A 2BN7A 2BWUA 2BHBA 1A16A 4RZYA 3CTZA 3Q6DA 1WBQA 2BWTA 2IW2A 4ZWUA 5CE6A 1WN1A 2BH3A 4EGEA 2BWXA 1JAWA 1WL6A 3IL0A 4FKCA 2BWWA 1W2MA 2BWSA 4S01A 4PV4A 4S2TP 5CNXA 3CB6A 3QOCA 3BIPA 1WL9A 4R60A 1CHMA 4RGZ1 2V3XA
chains in the Genus database with same CATH superfamily
3OVKA 3OOOA 3PN9A 3IG4A 1PV9A 4S2RP 4RZZA 5CDEA 2OKNA 2HOWA 5FCFA 2BWYA 1W7VA 3BITA 3L7GA 4ZWOA 3BIQA 3I7MA 4B28A 1M35A 3L24A 5E5BA 2BHCA 1WY2A 1WLRA 3PEBA 2BHAA 2BHDA 3RVAA 2V3YA 2ZSGA 5E2CA 4ZWPA 2BWVA 5CDLA 2V3ZA 4QR8A 3CB5A 4S00A 5CIKA 1KP0A 3O5VA 4ZNGA 5CDVA 5FCHA 1N51A 2BN7A 2BWUA 2BHBA 1A16A 4RZYA 3CTZA 3Q6DA 1WBQA 2BWTA 2IW2A 4ZWUA 5CE6A 1WN1A 2BH3A 4EGEA 2BWXA 1JAWA 1WL6A 3IL0A 4FKCA 2BWWA 1W2MA 2BWSA 4S01A 4PV4A 4S2TP 5CNXA 3CB6A 3QOCA 3BIPA 1WL9A 4R60A 1CHMA 4RGZ1 2V3XA
chains in the Genus database with same CATH topology
3OVKA 3OOOA 3PN9A 3IG4A 1PV9A 4S2RP 4RZZA 5CDEA 2OKNA 2HOWA 5FCFA 2BWYA 1W7VA 3BITA 3L7GA 4ZWOA 3BIQA 3I7MA 4B28A 1M35A 3L24A 5E5BA 2BHCA 1WY2A 1WLRA 3PEBA 2BHAA 2BHDA 3RVAA 2V3YA 2ZSGA 5E2CA 4ZWPA 2BWVA 5CDLA 2V3ZA 4QR8A 3CB5A 4S00A 5CIKA 1KP0A 3O5VA 4ZNGA 5CDVA 5FCHA 1N51A 2BN7A 2BWUA 2BHBA 1A16A 4RZYA 3CTZA 3Q6DA 1WBQA 2BWTA 2IW2A 4ZWUA 5CE6A 1WN1A 2BH3A 4EGEA 2BWXA 1JAWA 1WL6A 3IL0A 4FKCA 2BWWA 1W2MA 2BWSA 4S01A 4PV4A 4S2TP 5CNXA 3CB6A 3QOCA 3BIPA 1WL9A 4R60A 1CHMA 4RGZ1 2V3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OVK A;  3OOO A;  3PN9 A;  3IG4 A;  1PV9 A;  4S2R P;  4RZZ A;  5CDE A;  2OKN A;  2HOW A;  5FCF A;  2BWY A;  1W7V A;  3BIT A;  3L7G A;  4ZWO A;  3BIQ A;  3I7M A;  4B28 A;  1M35 A;  3L24 A;  5E5B A;  2BHC A;  1WY2 A;  1WLR A;  3PEB A;  2BHA A;  2BHD A;  3RVA A;  2V3Y A;  2ZSG A;  5E2C A;  4ZWP A;  2BWV A;  5CDL A;  2V3Z A;  4QR8 A;  3CB5 A;  4S00 A;  5CIK A;  1KP0 A;  3O5V A;  4ZNG A;  5CDV A;  5FCH A;  1N51 A;  2BN7 A;  2BWU A;  2BHB A;  1A16 A;  4RZY A;  3CTZ A;  3Q6D A;  1WBQ A;  2BWT A;  2IW2 A;  4ZWU A;  5CE6 A;  1WN1 A;  2BH3 A;  4EGE A;  2BWX A;  1JAW A;  1WL6 A;  3IL0 A;  4FKC A;  2BWW A;  1W2M A;  2BWS A;  4S01 A;  4PV4 A;  4S2T P;  5CNX A;  3CB6 A;  3QOC A;  3BIP A;  1WL9 A;  4R60 A;  1CHM A;  4RGZ 1;  2V3X A; 
#chains in the Genus database with same CATH topology
 3OVK A;  3OOO A;  3PN9 A;  3IG4 A;  1PV9 A;  4S2R P;  4RZZ A;  5CDE A;  2OKN A;  2HOW A;  5FCF A;  2BWY A;  1W7V A;  3BIT A;  3L7G A;  4ZWO A;  3BIQ A;  3I7M A;  4B28 A;  1M35 A;  3L24 A;  5E5B A;  2BHC A;  1WY2 A;  1WLR A;  3PEB A;  2BHA A;  2BHD A;  3RVA A;  2V3Y A;  2ZSG A;  5E2C A;  4ZWP A;  2BWV A;  5CDL A;  2V3Z A;  4QR8 A;  3CB5 A;  4S00 A;  5CIK A;  1KP0 A;  3O5V A;  4ZNG A;  5CDV A;  5FCH A;  1N51 A;  2BN7 A;  2BWU A;  2BHB A;  1A16 A;  4RZY A;  3CTZ A;  3Q6D A;  1WBQ A;  2BWT A;  2IW2 A;  4ZWU A;  5CE6 A;  1WN1 A;  2BH3 A;  4EGE A;  2BWX A;  1JAW A;  1WL6 A;  3IL0 A;  4FKC A;  2BWW A;  1W2M A;  2BWS A;  4S01 A;  4PV4 A;  4S2T P;  5CNX A;  3CB6 A;  3QOC A;  3BIP A;  1WL9 A;  4R60 A;  1CHM A;  4RGZ 1;  2V3X A; 
#chains in the Genus database with same CATH homology
 3OVK A;  3OOO A;  3PN9 A;  3IG4 A;  1PV9 A;  4S2R P;  4RZZ A;  5CDE A;  2OKN A;  2HOW A;  5FCF A;  2BWY A;  1W7V A;  3BIT A;  3L7G A;  4ZWO A;  3BIQ A;  3I7M A;  4B28 A;  1M35 A;  3L24 A;  5E5B A;  2BHC A;  1WY2 A;  1WLR A;  3PEB A;  2BHA A;  2BHD A;  3RVA A;  2V3Y A;  2ZSG A;  5E2C A;  4ZWP A;  2BWV A;  5CDL A;  2V3Z A;  4QR8 A;  3CB5 A;  4S00 A;  5CIK A;  1KP0 A;  3O5V A;  4ZNG A;  5CDV A;  5FCH A;  1N51 A;  2BN7 A;  2BWU A;  2BHB A;  1A16 A;  4RZY A;  3CTZ A;  3Q6D A;  1WBQ A;  2BWT A;  2IW2 A;  4ZWU A;  5CE6 A;  1WN1 A;  2BH3 A;  4EGE A;  2BWX A;  1JAW A;  1WL6 A;  3IL0 A;  4FKC A;  2BWW A;  1W2M A;  2BWS A;  4S01 A;  4PV4 A;  4S2T P;  5CNX A;  3CB6 A;  3QOC A;  3BIP A;  1WL9 A;  4R60 A;  1CHM A;  4RGZ 1;  2V3X A; 
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