3QOC | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	129
structure length	129
Chain Sequence	APLADTRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGSDVELIPVTGAI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Corynebacterium diphtheriae
publication title	Crystal structure of N-terminal domain (Creatinase/Prolidase like domain) of putative metallopeptidase from Corynebacterium diphtheriae rcsb
molecule keywords	Putative metallopeptidase
total genus	39
structure length	129
sequence length	129
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2011-02-09

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.350.10	Alpha Beta	3-Layer(aba) Sandwich	Creatine Amidinohydrolase; Chain A, domain 1	Creatinase/prolidase N-terminal domain	3qocA00

4RGZ1 1WN1A 2BHAA 4ZWOA 4RZYA 2BN7A 3IL0A 4ZNGA 4S01A 1WY2A 3CB5A 1WL6A 2BHCA 3BITA 2BWUA 3O5VA 2BH3A 1WBQA 2IW2A 3Q6DA 4B28A 2BWVA 1KP0A 2V3YA 4S2TP 2BHBA 3L7GA 3OOOA 2BWSA 3BIPA 4ZWUA 2BWXA 3BIQA 4S00A 2BWWA 5E2CA 3QOCA 4EGEA 3IG4A 1WL9A 3CTZA 3PN9A 5CDVA 4RZZA 2V3XA 1WLRA 4R60A 3I7MA 1N51A 3CB6A 5FCFA 5CIKA 4ZWPA 1W7VA 1M35A 3L24A 5CNXA 2BHDA 5CDEA 5CE6A 3OVKA 5FCHA 1A16A 3RVAA 1W2MA 2ZSGA 2OKNA 4QR8A 1PV9A 2BWYA 5E5BA 2HOWA 2BWTA 2V3ZA 1CHMA 4S2RP 4FKCA 5CDLA 3PEBA 4PV4A 1JAWA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4RGZ 1;  1WN1 A;  2BHA A;  4ZWO A;  4RZY A;  2BN7 A;  3IL0 A;  4ZNG A;  4S01 A;  1WY2 A;  3CB5 A;  1WL6 A;  2BHC A;  3BIT A;  2BWU A;  3O5V A;  2BH3 A;  1WBQ A;  2IW2 A;  3Q6D A;  4B28 A;  2BWV A;  1KP0 A;  2V3Y A;  4S2T P;  2BHB A;  3L7G A;  3OOO A;  2BWS A;  3BIP A;  4ZWU A;  2BWX A;  3BIQ A;  4S00 A;  2BWW A;  5E2C A;  3QOC A;  4EGE A;  3IG4 A;  1WL9 A;  3CTZ A;  3PN9 A;  5CDV A;  4RZZ A;  2V3X A;  1WLR A;  4R60 A;  3I7M A;  1N51 A;  3CB6 A;  5FCF A;  5CIK A;  4ZWP A;  1W7V A;  1M35 A;  3L24 A;  5CNX A;  2BHD A;  5CDE A;  5CE6 A;  3OVK A;  5FCH A;  1A16 A;  3RVA A;  1W2M A;  2ZSG A;  2OKN A;  4QR8 A;  1PV9 A;  2BWY A;  5E5B A;  2HOW A;  2BWT A;  2V3Z A;  1CHM A;  4S2R P;  4FKC A;  5CDL A;  3PEB A;  4PV4 A;  1JAW A; 
#chains in the Genus database with same CATH topology
 4RGZ 1;  1WN1 A;  2BHA A;  4ZWO A;  4RZY A;  2BN7 A;  3IL0 A;  4ZNG A;  4S01 A;  1WY2 A;  3CB5 A;  1WL6 A;  2BHC A;  3BIT A;  2BWU A;  3O5V A;  2BH3 A;  1WBQ A;  2IW2 A;  3Q6D A;  4B28 A;  2BWV A;  1KP0 A;  2V3Y A;  4S2T P;  2BHB A;  3L7G A;  3OOO A;  2BWS A;  3BIP A;  4ZWU A;  2BWX A;  3BIQ A;  4S00 A;  2BWW A;  5E2C A;  3QOC A;  4EGE A;  3IG4 A;  1WL9 A;  3CTZ A;  3PN9 A;  5CDV A;  4RZZ A;  2V3X A;  1WLR A;  4R60 A;  3I7M A;  1N51 A;  3CB6 A;  5FCF A;  5CIK A;  4ZWP A;  1W7V A;  1M35 A;  3L24 A;  5CNX A;  2BHD A;  5CDE A;  5CE6 A;  3OVK A;  5FCH A;  1A16 A;  3RVA A;  1W2M A;  2ZSG A;  2OKN A;  4QR8 A;  1PV9 A;  2BWY A;  5E5B A;  2HOW A;  2BWT A;  2V3Z A;  1CHM A;  4S2R P;  4FKC A;  5CDL A;  3PEB A;  4PV4 A;  1JAW A; 
#chains in the Genus database with same CATH homology
 4RGZ 1;  1WN1 A;  2BHA A;  4ZWO A;  4RZY A;  2BN7 A;  3IL0 A;  4ZNG A;  4S01 A;  1WY2 A;  3CB5 A;  1WL6 A;  2BHC A;  3BIT A;  2BWU A;  3O5V A;  2BH3 A;  1WBQ A;  2IW2 A;  3Q6D A;  4B28 A;  2BWV A;  1KP0 A;  2V3Y A;  4S2T P;  2BHB A;  3L7G A;  3OOO A;  2BWS A;  3BIP A;  4ZWU A;  2BWX A;  3BIQ A;  4S00 A;  2BWW A;  5E2C A;  3QOC A;  4EGE A;  3IG4 A;  1WL9 A;  3CTZ A;  3PN9 A;  5CDV A;  4RZZ A;  2V3X A;  1WLR A;  4R60 A;  3I7M A;  1N51 A;  3CB6 A;  5FCF A;  5CIK A;  4ZWP A;  1W7V A;  1M35 A;  3L24 A;  5CNX A;  2BHD A;  5CDE A;  5CE6 A;  3OVK A;  5FCH A;  1A16 A;  3RVA A;  1W2M A;  2ZSG A;  2OKN A;  4QR8 A;  1PV9 A;  2BWY A;  5E5B A;  2HOW A;  2BWT A;  2V3Z A;  1CHM A;  4S2R P;  4FKC A;  5CDL A;  3PEB A;  4PV4 A;  1JAW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3QOCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN