1BHTA

Nk1 fragment of human hepatocyte growth factor
Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
176
structure length
176
Chain Sequence
RRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI4 (102-105)S2 (60-63)TVIII1 (52-55)TI1 (54-57)O1 (70-96)TII1 (77-80)S3 (86-90)TI2 (90-93)S4 (95-99)TII3 (167-170)O3 (128-206)TIV3 (168-171)TI7 (143-146)S7 (147-148)TII2 (105-108)S6 (142-143)S5 (108-121)3H2 (122-124)TIV2 (129-132)TII'1 (130-133)TI6 (133-136)TI8 (151-154)TVIb1 (155-158)3H3 (164-166)TVIII2 (156-159)TIV4 (173-176)S1 (42-52)AH1 (67-76)3H1 (39-41)Updating...
connected with : NaN
molecule tags Heparin-binding domain
source organism Homo sapiens
publication title Crystal structure of the NK1 fragment of human hepatocyte growth factor at 2.0 A resolution.
pubmed doi rcsb
molecule keywords HEPATOCYTE GROWTH FACTOR
total genus 45
structure length 176
sequence length 176
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1bhtA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1bhtA01
5CSQA 1BHTA 3SRIA 2I9AA 4Z0EA 1GMOA 1Z40A 3MKPA 4R1AA 3KIVA 3HMRA 5EOKA 4BVCA 2LL3A 1KDUA 3E6PL 3HN4A 5CS5A 2SPTA 4APLA 4HZHA 5HPGA 1A0HA 4R1BA 1GMNA 1KRNA 4R1CA 1I5KA 2J8LA 2KNFA 3ZWZA 3BT2A 5I25A 3U73A 3ZLEA 1W8KA 2J8JA 4O03A 2DOIA 4BVWA 4D3CA 1NL1A 2FEBA 5CS9A 2K13X 5CT1A 4BV5A 1CEBA 2HGFA 2I9BA 2QJ2A 1GP9A 5EODA 2FD6A 2HPPP 2LL4M 4Z0FA 1PK4A 1KIVA 2F83A 2PF2A 4UAOA 3NXPA 1I71A 1CEAA 1PKRA 1JFNA 1I8NA 2PF1A 5COEA 4APMA 5CT3A 2KJ4A 4BV7A 2Y8RA 4Z09A 2QJ4A 1YXEA 4IUAA 2HPQP 2Q8AA 4KIVA 1HPKA 3SP8A 1HKYA 2K4RA 4BVVA 4A5TS 2Z8VA 2YIPA 1NK1A 1URKA 1NL2A 3HMSA 1KI0A 5CS3A 1TPKA 1B2IA 1W81A 2Z8WA 2X2ZA 2DOHX 4UV6A 4R19A 2K51A 5CS1A 2YILA 2PK4A 1HPJA 1PK2A 4Z0DA 2YIOA 3SRJA 4CIKA 1PMLA 2Q8BA 3LAQA 4DURA 5CP9A 3BT1A 3K65A 2L0SA 1PMKA 3HMTA 4NZQA 5CT2A 4BVDA
chains in the Genus database with same CATH superfamily
5CSQA 1BHTA 3SRIA 2I9AA 4Z0EA 1GMOA 1Z40A 3MKPA 4R1AA 3KIVA 3HMRA 2KL5A 5EOKA 4BVCA 2LL3A 1KDUA 3E6PL 3HN4A 5CS5A 4YIVA 2SPTA 4APLA 4HZHA 5HPGA 1A0HA 4R1BA 1GMNA 1KRNA 4R1CA 1I5KA 2J8LA 2KNFA 3ZWZA 3BT2A 5I25A 3U73A 3ZLEA 1W8KA 2J8JA 4O03A 2DOIA 4BVWA 4D3CA 1NL1A 2FEBA 5CS9A 2K13X 5CT1A 4BV5A 1CEBA 2HGFA 2I9BA 2QJ2A 1GP9A 5EODA 2FD6A 2HPPP 2LL4M 4Z0FA 1PK4A 1KIVA 2F83A 2PF2A 4UAOA 3NXPA 1I71A 1CEAA 1PKRA 1JFNA 1I8NA 2PF1A 5COEA 4YIZA 4APMA 5CT3A 2KJ4A 4BV7A 2Y8RA 4Z09A 2QJ4A 1YXEA 4IUAA 2HPQP 2Q8AA 4KIVA 1HPKA 3SP8A 1HKYA 2K4RA 4BVVA 4A5TS 2Z8VA 2YIPA 1NK1A 1URKA 1NL2A 3HMSA 1KI0A 5CS3A 1TPKA 1B2IA 1W81A 2Z8WA 2X2ZA 2DOHX 4UV6A 4R19A 2K51A 5CS1A 2YILA 2PK4A 1HPJA 1PK2A 4Z0DA 2YIOA 3SRJA 4CIKA 1PMLA 2Q8BA 3LAQA 4DURA 5CP9A 3BT1A 3K65A 2L0SA 1PMKA 3HMTA 4NZQA 5CT2A 4BVDA
chains in the Genus database with same CATH topology
5CSQA 1BHTA 3SRIA 2I9AA 4Z0EA 1GMOA 1Z40A 3MKPA 4R1AA 3KIVA 3HMRA 2KL5A 5EOKA 4BVCA 2LL3A 1KDUA 3E6PL 3HN4A 5CS5A 4YIVA 2SPTA 4APLA 4HZHA 5HPGA 1A0HA 4R1BA 1GMNA 1KRNA 4R1CA 1I5KA 2J8LA 2KNFA 3ZWZA 3BT2A 5I25A 3U73A 3ZLEA 1W8KA 2J8JA 4O03A 2DOIA 4BVWA 4D3CA 1NL1A 2FEBA 5CS9A 2K13X 5CT1A 4BV5A 1CEBA 2HGFA 2I9BA 2QJ2A 1GP9A 5EODA 2FD6A 2HPPP 2LL4M 4Z0FA 1PK4A 1KIVA 2F83A 2PF2A 4UAOA 3NXPA 1I71A 1CEAA 1PKRA 1JFNA 1I8NA 2PF1A 5COEA 4YIZA 4APMA 5CT3A 2KJ4A 4BV7A 2Y8RA 4Z09A 2QJ4A 1YXEA 4IUAA 2HPQP 2Q8AA 4KIVA 1HPKA 3SP8A 1HKYA 2K4RA 4BVVA 4A5TS 2Z8VA 2YIPA 1NK1A 1URKA 1NL2A 3HMSA 1KI0A 5CS3A 1TPKA 1B2IA 1W81A 2Z8WA 2X2ZA 2DOHX 4UV6A 4R19A 2K51A 5CS1A 2YILA 2PK4A 1HPJA 1PK2A 4Z0DA 2YIOA 3SRJA 4CIKA 1PMLA 2Q8BA 3LAQA 4DURA 5CP9A 3BT1A 3K65A 2L0SA 1PMKA 3HMTA 4NZQA 5CT2A 4BVDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CSQ A;  1BHT A;  3SRI A;  2I9A A;  4Z0E A;  1GMO A;  1Z40 A;  3MKP A;  4R1A A;  3KIV A;  3HMR A;  5EOK A;  4BVC A;  2LL3 A;  1KDU A;  3E6P L;  3HN4 A;  5CS5 A;  2SPT A;  4APL A;  4HZH A;  5HPG A;  1A0H A;  4R1B A;  1GMN A;  1KRN A;  4R1C A;  1I5K A;  2J8L A;  2KNF A;  3ZWZ A;  3BT2 A;  5I25 A;  3U73 A;  3ZLE A;  1W8K A;  2J8J A;  4O03 A;  2DOI A;  4BVW A;  4D3C A;  1NL1 A;  2FEB A;  5CS9 A;  2K13 X;  5CT1 A;  4BV5 A;  1CEB A;  2HGF A;  2I9B A;  2QJ2 A;  1GP9 A;  5EOD A;  2FD6 A;  2HPP P;  2LL4 M;  4Z0F A;  1PK4 A;  1KIV A;  2F83 A;  2PF2 A;  4UAO A;  3NXP A;  1I71 A;  1CEA A;  1PKR A;  1JFN A;  1I8N A;  2PF1 A;  5COE A;  4APM A;  5CT3 A;  2KJ4 A;  4BV7 A;  2Y8R A;  4Z09 A;  2QJ4 A;  1YXE A;  4IUA A;  2HPQ P;  2Q8A A;  4KIV A;  1HPK A;  3SP8 A;  1HKY A;  2K4R A;  4BVV A;  4A5T S;  2Z8V A;  2YIP A;  1NK1 A;  1URK A;  1NL2 A;  3HMS A;  1KI0 A;  5CS3 A;  1TPK A;  1B2I A;  1W81 A;  2Z8W A;  2X2Z A;  2DOH X;  4UV6 A;  4R19 A;  2K51 A;  5CS1 A;  2YIL A;  2PK4 A;  1HPJ A;  1PK2 A;  4Z0D A;  2YIO A;  3SRJ A;  4CIK A;  1PML A;  2Q8B A;  3LAQ A;  4DUR A;  5CP9 A;  3BT1 A;  3K65 A;  2L0S A;  1PMK A;  3HMT A;  4NZQ A;  5CT2 A;  4BVD A; 
#chains in the Genus database with same CATH topology
 5CSQ A;  1BHT A;  3SRI A;  2I9A A;  4Z0E A;  1GMO A;  1Z40 A;  3MKP A;  4R1A A;  3KIV A;  3HMR A;  2KL5 A;  5EOK A;  4BVC A;  2LL3 A;  1KDU A;  3E6P L;  3HN4 A;  5CS5 A;  4YIV A;  2SPT A;  4APL A;  4HZH A;  5HPG A;  1A0H A;  4R1B A;  1GMN A;  1KRN A;  4R1C A;  1I5K A;  2J8L A;  2KNF A;  3ZWZ A;  3BT2 A;  5I25 A;  3U73 A;  3ZLE A;  1W8K A;  2J8J A;  4O03 A;  2DOI A;  4BVW A;  4D3C A;  1NL1 A;  2FEB A;  5CS9 A;  2K13 X;  5CT1 A;  4BV5 A;  1CEB A;  2HGF A;  2I9B A;  2QJ2 A;  1GP9 A;  5EOD A;  2FD6 A;  2HPP P;  2LL4 M;  4Z0F A;  1PK4 A;  1KIV A;  2F83 A;  2PF2 A;  4UAO A;  3NXP A;  1I71 A;  1CEA A;  1PKR A;  1JFN A;  1I8N A;  2PF1 A;  5COE A;  4YIZ A;  4APM A;  5CT3 A;  2KJ4 A;  4BV7 A;  2Y8R A;  4Z09 A;  2QJ4 A;  1YXE A;  4IUA A;  2HPQ P;  2Q8A A;  4KIV A;  1HPK A;  3SP8 A;  1HKY A;  2K4R A;  4BVV A;  4A5T S;  2Z8V A;  2YIP A;  1NK1 A;  1URK A;  1NL2 A;  3HMS A;  1KI0 A;  5CS3 A;  1TPK A;  1B2I A;  1W81 A;  2Z8W A;  2X2Z A;  2DOH X;  4UV6 A;  4R19 A;  2K51 A;  5CS1 A;  2YIL A;  2PK4 A;  1HPJ A;  1PK2 A;  4Z0D A;  2YIO A;  3SRJ A;  4CIK A;  1PML A;  2Q8B A;  3LAQ A;  4DUR A;  5CP9 A;  3BT1 A;  3K65 A;  2L0S A;  1PMK A;  3HMT A;  4NZQ A;  5CT2 A;  4BVD A; 
#chains in the Genus database with same CATH homology
 5CSQ A;  1BHT A;  3SRI A;  2I9A A;  4Z0E A;  1GMO A;  1Z40 A;  3MKP A;  4R1A A;  3KIV A;  3HMR A;  2KL5 A;  5EOK A;  4BVC A;  2LL3 A;  1KDU A;  3E6P L;  3HN4 A;  5CS5 A;  4YIV A;  2SPT A;  4APL A;  4HZH A;  5HPG A;  1A0H A;  4R1B A;  1GMN A;  1KRN A;  4R1C A;  1I5K A;  2J8L A;  2KNF A;  3ZWZ A;  3BT2 A;  5I25 A;  3U73 A;  3ZLE A;  1W8K A;  2J8J A;  4O03 A;  2DOI A;  4BVW A;  4D3C A;  1NL1 A;  2FEB A;  5CS9 A;  2K13 X;  5CT1 A;  4BV5 A;  1CEB A;  2HGF A;  2I9B A;  2QJ2 A;  1GP9 A;  5EOD A;  2FD6 A;  2HPP P;  2LL4 M;  4Z0F A;  1PK4 A;  1KIV A;  2F83 A;  2PF2 A;  4UAO A;  3NXP A;  1I71 A;  1CEA A;  1PKR A;  1JFN A;  1I8N A;  2PF1 A;  5COE A;  4YIZ A;  4APM A;  5CT3 A;  2KJ4 A;  4BV7 A;  2Y8R A;  4Z09 A;  2QJ4 A;  1YXE A;  4IUA A;  2HPQ P;  2Q8A A;  4KIV A;  1HPK A;  3SP8 A;  1HKY A;  2K4R A;  4BVV A;  4A5T S;  2Z8V A;  2YIP A;  1NK1 A;  1URK A;  1NL2 A;  3HMS A;  1KI0 A;  5CS3 A;  1TPK A;  1B2I A;  1W81 A;  2Z8W A;  2X2Z A;  2DOH X;  4UV6 A;  4R19 A;  2K51 A;  5CS1 A;  2YIL A;  2PK4 A;  1HPJ A;  1PK2 A;  4Z0D A;  2YIO A;  3SRJ A;  4CIK A;  1PML A;  2Q8B A;  3LAQ A;  4DUR A;  5CP9 A;  3BT1 A;  3K65 A;  2L0S A;  1PMK A;  3HMT A;  4NZQ A;  5CT2 A;  4BVD A; 
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