1EM9A

Rous sarcoma virus capsid protein: n-terminal domain
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
147
structure length
147
Chain Sequence
PVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords GAG POLYPROTEIN CAPSID PROTEIN P27
publication title Structure and self-association of the Rous sarcoma virus capsid protein.
pubmed doi rcsb
source organism Rous sarcoma virus - prague c
total genus 53
structure length 147
sequence length 147
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-03-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 1em9A00
3BP9A 2GONA 2V4XA 5JPAA 2PWOA 1EIAA 1G03A 4PH3A 1P7NA 4QNBA 4XROA 4INBA 4NX4C 2X83A 3P05A 4J93A 2XGUA 2XGYA 4U0CA 4E92A 4DGEC 5HGNA 2EIAA 5HGOA 1QRJA 4WYMA 5HGLA 3H4EA 2M8LA 4U0FA 2Y4ZA 4PH0A 4XFXA 1M9XC 4U0BA 2WLVB 1M9DC 2WLVA 4U0AA 1M9FC 4XFYA 2M8PA 2M8NA 2KGFA 1GWPA 2X82A 3H47A 4XRQA 1L6NA 1AFVA 1M9YC 2XDEA 1M9EC 5HGMA 1U7KA 1E6JP 4E91A 1AK4C 2JPRA 5HGKA 4LQWC 1M9CC 4U0EA 2PWMA 2XGVA 3NTEA 4HTWA 2X2DD 1EM9A 2LF4A 2GOLB 4U0DA 1D1DA 2PXRC 4DGAC 4XFZA 4B4NA 4PH2A 3MGEA
chains in the Genus database with same CATH superfamily
3BP9A 2GONA 2V4XA 5JPAA 2PWOA 1EIAA 1G03A 4PH3A 1P7NA 4QNBA 4XROA 4INBA 4NX4C 2X83A 3P05A 4J93A 2XGUA 2XGYA 4U0CA 4E92A 4DGEC 5HGNA 2EIAA 5HGOA 1QRJA 4WYMA 5HGLA 3H4EA 2M8LA 4U0FA 2Y4ZA 4PH0A 4XFXA 1M9XC 4U0BA 2WLVB 1M9DC 2WLVA 4U0AA 1M9FC 4XFYA 2M8PA 2M8NA 2KGFA 1GWPA 2X82A 3H47A 4XRQA 1L6NA 1AFVA 1M9YC 2XDEA 1M9EC 5HGMA 1U7KA 1E6JP 4E91A 1AK4C 2JPRA 5HGKA 4LQWC 1M9CC 4U0EA 2PWMA 2XGVA 3NTEA 4HTWA 2X2DD 1EM9A 2LF4A 2GOLB 4U0DA 1D1DA 2PXRC 4DGAC 4XFZA 4B4NA 4PH2A 3MGEA
chains in the Genus database with same CATH topology
3BP9A 2GONA 2V4XA 5JPAA 2PWOA 1EIAA 1G03A 4PH3A 1P7NA 4QNBA 4XROA 4INBA 4NX4C 2X83A 3P05A 4J93A 2XGUA 2XGYA 4U0CA 4E92A 4DGEC 5HGNA 2EIAA 5HGOA 1QRJA 4WYMA 5HGLA 3H4EA 2M8LA 4U0FA 2Y4ZA 4PH0A 4XFXA 1M9XC 4U0BA 2WLVB 1M9DC 2WLVA 4U0AA 1M9FC 4XFYA 2M8PA 2M8NA 2KGFA 1GWPA 2X82A 3H47A 4XRQA 1L6NA 1AFVA 1M9YC 2XDEA 1M9EC 5HGMA 1U7KA 1E6JP 4E91A 1AK4C 2JPRA 5HGKA 4LQWC 1M9CC 4U0EA 2PWMA 2XGVA 3NTEA 4HTWA 2X2DD 1EM9A 2LF4A 2GOLB 4U0DA 1D1DA 2PXRC 4DGAC 4XFZA 4B4NA 4PH2A 3MGEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BP9 A;  2GON A;  2V4X A;  5JPA A;  2PWO A;  1EIA A;  1G03 A;  4PH3 A;  1P7N A;  4QNB A;  4XRO A;  4INB A;  4NX4 C;  2X83 A;  3P05 A;  4J93 A;  2XGU A;  2XGY A;  4U0C A;  4E92 A;  4DGE C;  5HGN A;  2EIA A;  5HGO A;  1QRJ A;  4WYM A;  5HGL A;  3H4E A;  2M8L A;  4U0F A;  2Y4Z A;  4PH0 A;  4XFX A;  1M9X C;  4U0B A;  2WLV B;  1M9D C;  2WLV A;  4U0A A;  1M9F C;  4XFY A;  2M8P A;  2M8N A;  2KGF A;  1GWP A;  2X82 A;  3H47 A;  4XRQ A;  1L6N A;  1AFV A;  1M9Y C;  2XDE A;  1M9E C;  5HGM A;  1U7K A;  1E6J P;  4E91 A;  1AK4 C;  2JPR A;  5HGK A;  4LQW C;  1M9C C;  4U0E A;  2PWM A;  2XGV A;  3NTE A;  4HTW A;  2X2D D;  1EM9 A;  2LF4 A;  2GOL B;  4U0D A;  1D1D A;  2PXR C;  4DGA C;  4XFZ A;  4B4N A;  4PH2 A;  3MGE A; 
#chains in the Genus database with same CATH topology
 3BP9 A;  2GON A;  2V4X A;  5JPA A;  2PWO A;  1EIA A;  1G03 A;  4PH3 A;  1P7N A;  4QNB A;  4XRO A;  4INB A;  4NX4 C;  2X83 A;  3P05 A;  4J93 A;  2XGU A;  2XGY A;  4U0C A;  4E92 A;  4DGE C;  5HGN A;  2EIA A;  5HGO A;  1QRJ A;  4WYM A;  5HGL A;  3H4E A;  2M8L A;  4U0F A;  2Y4Z A;  4PH0 A;  4XFX A;  1M9X C;  4U0B A;  2WLV B;  1M9D C;  2WLV A;  4U0A A;  1M9F C;  4XFY A;  2M8P A;  2M8N A;  2KGF A;  1GWP A;  2X82 A;  3H47 A;  4XRQ A;  1L6N A;  1AFV A;  1M9Y C;  2XDE A;  1M9E C;  5HGM A;  1U7K A;  1E6J P;  4E91 A;  1AK4 C;  2JPR A;  5HGK A;  4LQW C;  1M9C C;  4U0E A;  2PWM A;  2XGV A;  3NTE A;  4HTW A;  2X2D D;  1EM9 A;  2LF4 A;  2GOL B;  4U0D A;  1D1D A;  2PXR C;  4DGA C;  4XFZ A;  4B4N A;  4PH2 A;  3MGE A; 
#chains in the Genus database with same CATH homology
 3BP9 A;  2GON A;  2V4X A;  5JPA A;  2PWO A;  1EIA A;  1G03 A;  4PH3 A;  1P7N A;  4QNB A;  4XRO A;  4INB A;  4NX4 C;  2X83 A;  3P05 A;  4J93 A;  2XGU A;  2XGY A;  4U0C A;  4E92 A;  4DGE C;  5HGN A;  2EIA A;  5HGO A;  1QRJ A;  4WYM A;  5HGL A;  3H4E A;  2M8L A;  4U0F A;  2Y4Z A;  4PH0 A;  4XFX A;  1M9X C;  4U0B A;  2WLV B;  1M9D C;  2WLV A;  4U0A A;  1M9F C;  4XFY A;  2M8P A;  2M8N A;  2KGF A;  1GWP A;  2X82 A;  3H47 A;  4XRQ A;  1L6N A;  1AFV A;  1M9Y C;  2XDE A;  1M9E C;  5HGM A;  1U7K A;  1E6J P;  4E91 A;  1AK4 C;  2JPR A;  5HGK A;  4LQW C;  1M9C C;  4U0E A;  2PWM A;  2XGV A;  3NTE A;  4HTW A;  2X2D D;  1EM9 A;  2LF4 A;  2GOL B;  4U0D A;  1D1D A;  2PXR C;  4DGA C;  4XFZ A;  4B4N A;  4PH2 A;  3MGE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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