2KGFA

N-terminal domain of capsid protein from the mason-pfizer monkey virus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
140
structure length
140
Chain Sequence
PVTETVDGQGQAWRHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLSGGDHLLWKSEFFENCRDTAKRNQQAGNGWDFDMLTGSGNYSSTDAQMQYDPGLFAQIQAAATKAWRKLPVKGD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Mason-pfizer monkey virus
publication title NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus
pubmed doi rcsb
molecule keywords Capsid protein p27
total genus 46
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2009-03-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2kgfA00
4DGEC 3BP9A 1AK4C 2EIAA 1M9FC 2XDEA 2X82A 3H47A 4QNBA 4PH2A 4INBA 3H4EA 4XFYA 1G03A 4PH0A 5HGKA 2M8NA 4HTWA 2XGVA 3NTEA 1EIAA 2Y4ZA 1D1DA 2X2DD 5HGLA 1GWPA 4E92A 1AFVA 1M9YC 4XFXA 4U0FA 1U7KA 5HGNA 2GOLB 1M9XC 5HGMA 4U0DA 3P05A 2LF4A 2KGFA 1M9DC 4XROA 4LQWC 4B4NA 4E91A 1P7NA 4XFZA 4DGAC 4J93A 1M9EC 4U0CA 4WYMA 2GONA 1QRJA 4PH3A 1L6NA 5HGOA 2PWOA 2M8LA 2XGYA 4XRQA 4U0BA 4NX4C 4U0EA 2WLVA 2PXRC 5JPAA 2XGUA 2V4XA 2JPRA 1M9CC 2X83A 3MGEA 1EM9A 4U0AA 1E6JP 2PWMA 2M8PA 2WLVB
chains in the Genus database with same CATH superfamily
4DGEC 3BP9A 1AK4C 2EIAA 1M9FC 2XDEA 2X82A 3H47A 4QNBA 4PH2A 4INBA 3H4EA 4XFYA 1G03A 4PH0A 5HGKA 2M8NA 4HTWA 2XGVA 3NTEA 1EIAA 2Y4ZA 1D1DA 2X2DD 5HGLA 1GWPA 4E92A 1AFVA 1M9YC 4XFXA 4U0FA 1U7KA 5HGNA 2GOLB 1M9XC 5HGMA 4U0DA 3P05A 2LF4A 2KGFA 1M9DC 4XROA 4LQWC 4B4NA 4E91A 1P7NA 4XFZA 4DGAC 4J93A 1M9EC 4U0CA 4WYMA 2GONA 1QRJA 4PH3A 1L6NA 5HGOA 2PWOA 2M8LA 2XGYA 4XRQA 4U0BA 4NX4C 4U0EA 2WLVA 2PXRC 5JPAA 2XGUA 2V4XA 2JPRA 1M9CC 2X83A 3MGEA 1EM9A 4U0AA 1E6JP 2PWMA 2M8PA 2WLVB
chains in the Genus database with same CATH topology
4DGEC 3BP9A 1AK4C 2EIAA 1M9FC 2XDEA 2X82A 3H47A 4QNBA 4PH2A 4INBA 3H4EA 4XFYA 1G03A 4PH0A 5HGKA 2M8NA 4HTWA 2XGVA 3NTEA 1EIAA 2Y4ZA 1D1DA 2X2DD 5HGLA 1GWPA 4E92A 1AFVA 1M9YC 4XFXA 4U0FA 1U7KA 5HGNA 2GOLB 1M9XC 5HGMA 4U0DA 3P05A 2LF4A 2KGFA 1M9DC 4XROA 4LQWC 4B4NA 4E91A 1P7NA 4XFZA 4DGAC 4J93A 1M9EC 4U0CA 4WYMA 2GONA 1QRJA 4PH3A 1L6NA 5HGOA 2PWOA 2M8LA 2XGYA 4XRQA 4U0BA 4NX4C 4U0EA 2WLVA 2PXRC 5JPAA 2XGUA 2V4XA 2JPRA 1M9CC 2X83A 3MGEA 1EM9A 4U0AA 1E6JP 2PWMA 2M8PA 2WLVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DGE C;  3BP9 A;  1AK4 C;  2EIA A;  1M9F C;  2XDE A;  2X82 A;  3H47 A;  4QNB A;  4PH2 A;  4INB A;  3H4E A;  4XFY A;  1G03 A;  4PH0 A;  5HGK A;  2M8N A;  4HTW A;  2XGV A;  3NTE A;  1EIA A;  2Y4Z A;  1D1D A;  2X2D D;  5HGL A;  1GWP A;  4E92 A;  1AFV A;  1M9Y C;  4XFX A;  4U0F A;  1U7K A;  5HGN A;  2GOL B;  1M9X C;  5HGM A;  4U0D A;  3P05 A;  2LF4 A;  2KGF A;  1M9D C;  4XRO A;  4LQW C;  4B4N A;  4E91 A;  1P7N A;  4XFZ A;  4DGA C;  4J93 A;  1M9E C;  4U0C A;  4WYM A;  2GON A;  1QRJ A;  4PH3 A;  1L6N A;  5HGO A;  2PWO A;  2M8L A;  2XGY A;  4XRQ A;  4U0B A;  4NX4 C;  4U0E A;  2WLV A;  2PXR C;  5JPA A;  2XGU A;  2V4X A;  2JPR A;  1M9C C;  2X83 A;  3MGE A;  1EM9 A;  4U0A A;  1E6J P;  2PWM A;  2M8P A;  2WLV B; 
#chains in the Genus database with same CATH topology
 4DGE C;  3BP9 A;  1AK4 C;  2EIA A;  1M9F C;  2XDE A;  2X82 A;  3H47 A;  4QNB A;  4PH2 A;  4INB A;  3H4E A;  4XFY A;  1G03 A;  4PH0 A;  5HGK A;  2M8N A;  4HTW A;  2XGV A;  3NTE A;  1EIA A;  2Y4Z A;  1D1D A;  2X2D D;  5HGL A;  1GWP A;  4E92 A;  1AFV A;  1M9Y C;  4XFX A;  4U0F A;  1U7K A;  5HGN A;  2GOL B;  1M9X C;  5HGM A;  4U0D A;  3P05 A;  2LF4 A;  2KGF A;  1M9D C;  4XRO A;  4LQW C;  4B4N A;  4E91 A;  1P7N A;  4XFZ A;  4DGA C;  4J93 A;  1M9E C;  4U0C A;  4WYM A;  2GON A;  1QRJ A;  4PH3 A;  1L6N A;  5HGO A;  2PWO A;  2M8L A;  2XGY A;  4XRQ A;  4U0B A;  4NX4 C;  4U0E A;  2WLV A;  2PXR C;  5JPA A;  2XGU A;  2V4X A;  2JPR A;  1M9C C;  2X83 A;  3MGE A;  1EM9 A;  4U0A A;  1E6J P;  2PWM A;  2M8P A;  2WLV B; 
#chains in the Genus database with same CATH homology
 4DGE C;  3BP9 A;  1AK4 C;  2EIA A;  1M9F C;  2XDE A;  2X82 A;  3H47 A;  4QNB A;  4PH2 A;  4INB A;  3H4E A;  4XFY A;  1G03 A;  4PH0 A;  5HGK A;  2M8N A;  4HTW A;  2XGV A;  3NTE A;  1EIA A;  2Y4Z A;  1D1D A;  2X2D D;  5HGL A;  1GWP A;  4E92 A;  1AFV A;  1M9Y C;  4XFX A;  4U0F A;  1U7K A;  5HGN A;  2GOL B;  1M9X C;  5HGM A;  4U0D A;  3P05 A;  2LF4 A;  2KGF A;  1M9D C;  4XRO A;  4LQW C;  4B4N A;  4E91 A;  1P7N A;  4XFZ A;  4DGA C;  4J93 A;  1M9E C;  4U0C A;  4WYM A;  2GON A;  1QRJ A;  4PH3 A;  1L6N A;  5HGO A;  2PWO A;  2M8L A;  2XGY A;  4XRQ A;  4U0B A;  4NX4 C;  4U0E A;  2WLV A;  2PXR C;  5JPA A;  2XGU A;  2V4X A;  2JPR A;  1M9C C;  2X83 A;  3MGE A;  1EM9 A;  4U0A A;  1E6J P;  2PWM A;  2M8P A;  2WLV B; 
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similar chains in the pdb database (?% sequence similarity)

 
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