2KGFA

N-terminal domain of capsid protein from the mason-pfizer monkey virus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
140
structure length
140
Chain Sequence
PVTETVDGQGQAWRHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLSGGDHLLWKSEFFENCRDTAKRNQQAGNGWDFDMLTGSGNYSSTDAQMQYDPGLFAQIQAAATKAWRKLPVKGD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Capsid protein p27
publication title NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus
pubmed doi rcsb
source organism Mason-pfizer monkey virus
molecule tags Viral protein
total genus 46
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2009-03-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2kgfA00
5HGOA 4XFYA 4U0BA 3P05A 1AK4C 1M9YC 1E6JP 1M9CC 4NX4C 2LF4A 2KGFA 1G03A 4U0EA 1U7KA 4DGEC 2M8PA 2PXRC 1M9XC 2XGYA 4J93A 5HGMA 2M8LA 2PWMA 1M9EC 2PWOA 2JPRA 2Y4ZA 4E91A 3H47A 4E92A 4PH0A 4DGAC 2GONA 4XRQA 4QNBA 4PH3A 2X83A 5HGLA 1D1DA 4XROA 2X2DD 4XFXA 1QRJA 2EIAA 4U0AA 2XGVA 1L6NA 4INBA 1AFVA 1EIAA 3H4EA 2X82A 4XFZA 3MGEA 2XGUA 5HGNA 1GWPA 5JPAA 1M9DC 1P7NA 5HGKA 2XDEA 1EM9A 4LQWC 2M8NA 3BP9A 2WLVA 3NTEA 4U0DA 4HTWA 4WYMA 4PH2A 2GOLB 2WLVB 4U0CA 4B4NA 1M9FC 4U0FA 2V4XA
chains in the Genus database with same CATH superfamily
5HGOA 4XFYA 4U0BA 3P05A 1AK4C 1M9YC 1E6JP 1M9CC 4NX4C 2LF4A 2KGFA 1G03A 4U0EA 1U7KA 4DGEC 2M8PA 2PXRC 1M9XC 2XGYA 4J93A 5HGMA 2M8LA 2PWMA 1M9EC 2PWOA 2JPRA 2Y4ZA 4E91A 3H47A 4E92A 4PH0A 4DGAC 2GONA 4XRQA 4QNBA 4PH3A 2X83A 5HGLA 1D1DA 4XROA 2X2DD 4XFXA 1QRJA 2EIAA 4U0AA 2XGVA 1L6NA 4INBA 1AFVA 1EIAA 3H4EA 2X82A 4XFZA 3MGEA 2XGUA 5HGNA 1GWPA 5JPAA 1M9DC 1P7NA 5HGKA 2XDEA 1EM9A 4LQWC 2M8NA 3BP9A 2WLVA 3NTEA 4U0DA 4HTWA 4WYMA 4PH2A 2GOLB 2WLVB 4U0CA 4B4NA 1M9FC 4U0FA 2V4XA
chains in the Genus database with same CATH topology
5HGOA 4XFYA 4U0BA 3P05A 1AK4C 1M9YC 1E6JP 1M9CC 4NX4C 2LF4A 2KGFA 1G03A 4U0EA 1U7KA 4DGEC 2M8PA 2PXRC 1M9XC 2XGYA 4J93A 5HGMA 2M8LA 2PWMA 1M9EC 2PWOA 2JPRA 2Y4ZA 4E91A 3H47A 4E92A 4PH0A 4DGAC 2GONA 4XRQA 4QNBA 4PH3A 2X83A 5HGLA 1D1DA 4XROA 2X2DD 4XFXA 1QRJA 2EIAA 4U0AA 2XGVA 1L6NA 4INBA 1AFVA 1EIAA 3H4EA 2X82A 4XFZA 3MGEA 2XGUA 5HGNA 1GWPA 5JPAA 1M9DC 1P7NA 5HGKA 2XDEA 1EM9A 4LQWC 2M8NA 3BP9A 2WLVA 3NTEA 4U0DA 4HTWA 4WYMA 4PH2A 2GOLB 2WLVB 4U0CA 4B4NA 1M9FC 4U0FA 2V4XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HGO A;  4XFY A;  4U0B A;  3P05 A;  1AK4 C;  1M9Y C;  1E6J P;  1M9C C;  4NX4 C;  2LF4 A;  2KGF A;  1G03 A;  4U0E A;  1U7K A;  4DGE C;  2M8P A;  2PXR C;  1M9X C;  2XGY A;  4J93 A;  5HGM A;  2M8L A;  2PWM A;  1M9E C;  2PWO A;  2JPR A;  2Y4Z A;  4E91 A;  3H47 A;  4E92 A;  4PH0 A;  4DGA C;  2GON A;  4XRQ A;  4QNB A;  4PH3 A;  2X83 A;  5HGL A;  1D1D A;  4XRO A;  2X2D D;  4XFX A;  1QRJ A;  2EIA A;  4U0A A;  2XGV A;  1L6N A;  4INB A;  1AFV A;  1EIA A;  3H4E A;  2X82 A;  4XFZ A;  3MGE A;  2XGU A;  5HGN A;  1GWP A;  5JPA A;  1M9D C;  1P7N A;  5HGK A;  2XDE A;  1EM9 A;  4LQW C;  2M8N A;  3BP9 A;  2WLV A;  3NTE A;  4U0D A;  4HTW A;  4WYM A;  4PH2 A;  2GOL B;  2WLV B;  4U0C A;  4B4N A;  1M9F C;  4U0F A;  2V4X A; 
#chains in the Genus database with same CATH topology
 5HGO A;  4XFY A;  4U0B A;  3P05 A;  1AK4 C;  1M9Y C;  1E6J P;  1M9C C;  4NX4 C;  2LF4 A;  2KGF A;  1G03 A;  4U0E A;  1U7K A;  4DGE C;  2M8P A;  2PXR C;  1M9X C;  2XGY A;  4J93 A;  5HGM A;  2M8L A;  2PWM A;  1M9E C;  2PWO A;  2JPR A;  2Y4Z A;  4E91 A;  3H47 A;  4E92 A;  4PH0 A;  4DGA C;  2GON A;  4XRQ A;  4QNB A;  4PH3 A;  2X83 A;  5HGL A;  1D1D A;  4XRO A;  2X2D D;  4XFX A;  1QRJ A;  2EIA A;  4U0A A;  2XGV A;  1L6N A;  4INB A;  1AFV A;  1EIA A;  3H4E A;  2X82 A;  4XFZ A;  3MGE A;  2XGU A;  5HGN A;  1GWP A;  5JPA A;  1M9D C;  1P7N A;  5HGK A;  2XDE A;  1EM9 A;  4LQW C;  2M8N A;  3BP9 A;  2WLV A;  3NTE A;  4U0D A;  4HTW A;  4WYM A;  4PH2 A;  2GOL B;  2WLV B;  4U0C A;  4B4N A;  1M9F C;  4U0F A;  2V4X A; 
#chains in the Genus database with same CATH homology
 5HGO A;  4XFY A;  4U0B A;  3P05 A;  1AK4 C;  1M9Y C;  1E6J P;  1M9C C;  4NX4 C;  2LF4 A;  2KGF A;  1G03 A;  4U0E A;  1U7K A;  4DGE C;  2M8P A;  2PXR C;  1M9X C;  2XGY A;  4J93 A;  5HGM A;  2M8L A;  2PWM A;  1M9E C;  2PWO A;  2JPR A;  2Y4Z A;  4E91 A;  3H47 A;  4E92 A;  4PH0 A;  4DGA C;  2GON A;  4XRQ A;  4QNB A;  4PH3 A;  2X83 A;  5HGL A;  1D1D A;  4XRO A;  2X2D D;  4XFX A;  1QRJ A;  2EIA A;  4U0A A;  2XGV A;  1L6N A;  4INB A;  1AFV A;  1EIA A;  3H4E A;  2X82 A;  4XFZ A;  3MGE A;  2XGU A;  5HGN A;  1GWP A;  5JPA A;  1M9D C;  1P7N A;  5HGK A;  2XDE A;  1EM9 A;  4LQW C;  2M8N A;  3BP9 A;  2WLV A;  3NTE A;  4U0D A;  4HTW A;  4WYM A;  4PH2 A;  2GOL B;  2WLV B;  4U0C A;  4B4N A;  1M9F C;  4U0F A;  2V4X A; 
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