4LQWC

Crystal structure of hiv-1 capsid n-terminal domain in complex with nup358 cyclophilin
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title HIV-1 capsid undergoes coupled binding and isomerization by the nuclear pore protein NUP358.
pubmed doi rcsb
molecule tags Isomerase
source organism Homo sapiens
molecule keywords E3 SUMO-protein ligase RanBP2
total genus 49
structure length 146
sequence length 146
chains with identical sequence D
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2013-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 4lqwC00
2XGYA 1AFVA 2Y4ZA 3MGEA 5HGMA 4U0CA 2X82A 1GWPA 5HGLA 4DGAC 5HGOA 3BP9A 1G03A 1QRJA 4PH3A 4XRQA 1L6NA 2V4XA 1M9DC 1D1DA 2PWOA 4U0BA 4XROA 1AK4C 1EIAA 4U0DA 1M9EC 2LF4A 4WYMA 4XFZA 1M9XC 2WLVB 4XFYA 1P7NA 2X83A 3P05A 4LQWC 4PH0A 5HGNA 4NX4C 4DGEC 4PH2A 3NTEA 4B4NA 2M8NA 5JPAA 4U0FA 1EM9A 4E92A 2PWMA 4J93A 2JPRA 1M9CC 1M9YC 2X2DD 2XDEA 5HGKA 1M9FC 1E6JP 4INBA 2GONA 2M8LA 4HTWA 2PXRC 2XGUA 2M8PA 2GOLB 3H47A 2WLVA 2XGVA 2KGFA 4E91A 2EIAA 4QNBA 4XFXA 4U0AA 3H4EA 1U7KA 4U0EA
chains in the Genus database with same CATH superfamily
2XGYA 1AFVA 2Y4ZA 3MGEA 5HGMA 4U0CA 2X82A 1GWPA 5HGLA 4DGAC 5HGOA 3BP9A 1G03A 1QRJA 4PH3A 4XRQA 1L6NA 2V4XA 1M9DC 1D1DA 2PWOA 4U0BA 4XROA 1AK4C 1EIAA 4U0DA 1M9EC 2LF4A 4WYMA 4XFZA 1M9XC 2WLVB 4XFYA 1P7NA 2X83A 3P05A 4LQWC 4PH0A 5HGNA 4NX4C 4DGEC 4PH2A 3NTEA 4B4NA 2M8NA 5JPAA 4U0FA 1EM9A 4E92A 2PWMA 4J93A 2JPRA 1M9CC 1M9YC 2X2DD 2XDEA 5HGKA 1M9FC 1E6JP 4INBA 2GONA 2M8LA 4HTWA 2PXRC 2XGUA 2M8PA 2GOLB 3H47A 2WLVA 2XGVA 2KGFA 4E91A 2EIAA 4QNBA 4XFXA 4U0AA 3H4EA 1U7KA 4U0EA
chains in the Genus database with same CATH topology
2XGYA 1AFVA 2Y4ZA 3MGEA 5HGMA 4U0CA 2X82A 1GWPA 5HGLA 4DGAC 5HGOA 3BP9A 1G03A 1QRJA 4PH3A 4XRQA 1L6NA 2V4XA 1M9DC 1D1DA 2PWOA 4U0BA 4XROA 1AK4C 1EIAA 4U0DA 1M9EC 2LF4A 4WYMA 4XFZA 1M9XC 2WLVB 4XFYA 1P7NA 2X83A 3P05A 4LQWC 4PH0A 5HGNA 4NX4C 4DGEC 4PH2A 3NTEA 4B4NA 2M8NA 5JPAA 4U0FA 1EM9A 4E92A 2PWMA 4J93A 2JPRA 1M9CC 1M9YC 2X2DD 2XDEA 5HGKA 1M9FC 1E6JP 4INBA 2GONA 2M8LA 4HTWA 2PXRC 2XGUA 2M8PA 2GOLB 3H47A 2WLVA 2XGVA 2KGFA 4E91A 2EIAA 4QNBA 4XFXA 4U0AA 3H4EA 1U7KA 4U0EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XGY A;  1AFV A;  2Y4Z A;  3MGE A;  5HGM A;  4U0C A;  2X82 A;  1GWP A;  5HGL A;  4DGA C;  5HGO A;  3BP9 A;  1G03 A;  1QRJ A;  4PH3 A;  4XRQ A;  1L6N A;  2V4X A;  1M9D C;  1D1D A;  2PWO A;  4U0B A;  4XRO A;  1AK4 C;  1EIA A;  4U0D A;  1M9E C;  2LF4 A;  4WYM A;  4XFZ A;  1M9X C;  2WLV B;  4XFY A;  1P7N A;  2X83 A;  3P05 A;  4LQW C;  4PH0 A;  5HGN A;  4NX4 C;  4DGE C;  4PH2 A;  3NTE A;  4B4N A;  2M8N A;  5JPA A;  4U0F A;  1EM9 A;  4E92 A;  2PWM A;  4J93 A;  2JPR A;  1M9C C;  1M9Y C;  2X2D D;  2XDE A;  5HGK A;  1M9F C;  1E6J P;  4INB A;  2GON A;  2M8L A;  4HTW A;  2PXR C;  2XGU A;  2M8P A;  2GOL B;  3H47 A;  2WLV A;  2XGV A;  2KGF A;  4E91 A;  2EIA A;  4QNB A;  4XFX A;  4U0A A;  3H4E A;  1U7K A;  4U0E A; 
#chains in the Genus database with same CATH topology
 2XGY A;  1AFV A;  2Y4Z A;  3MGE A;  5HGM A;  4U0C A;  2X82 A;  1GWP A;  5HGL A;  4DGA C;  5HGO A;  3BP9 A;  1G03 A;  1QRJ A;  4PH3 A;  4XRQ A;  1L6N A;  2V4X A;  1M9D C;  1D1D A;  2PWO A;  4U0B A;  4XRO A;  1AK4 C;  1EIA A;  4U0D A;  1M9E C;  2LF4 A;  4WYM A;  4XFZ A;  1M9X C;  2WLV B;  4XFY A;  1P7N A;  2X83 A;  3P05 A;  4LQW C;  4PH0 A;  5HGN A;  4NX4 C;  4DGE C;  4PH2 A;  3NTE A;  4B4N A;  2M8N A;  5JPA A;  4U0F A;  1EM9 A;  4E92 A;  2PWM A;  4J93 A;  2JPR A;  1M9C C;  1M9Y C;  2X2D D;  2XDE A;  5HGK A;  1M9F C;  1E6J P;  4INB A;  2GON A;  2M8L A;  4HTW A;  2PXR C;  2XGU A;  2M8P A;  2GOL B;  3H47 A;  2WLV A;  2XGV A;  2KGF A;  4E91 A;  2EIA A;  4QNB A;  4XFX A;  4U0A A;  3H4E A;  1U7K A;  4U0E A; 
#chains in the Genus database with same CATH homology
 2XGY A;  1AFV A;  2Y4Z A;  3MGE A;  5HGM A;  4U0C A;  2X82 A;  1GWP A;  5HGL A;  4DGA C;  5HGO A;  3BP9 A;  1G03 A;  1QRJ A;  4PH3 A;  4XRQ A;  1L6N A;  2V4X A;  1M9D C;  1D1D A;  2PWO A;  4U0B A;  4XRO A;  1AK4 C;  1EIA A;  4U0D A;  1M9E C;  2LF4 A;  4WYM A;  4XFZ A;  1M9X C;  2WLV B;  4XFY A;  1P7N A;  2X83 A;  3P05 A;  4LQW C;  4PH0 A;  5HGN A;  4NX4 C;  4DGE C;  4PH2 A;  3NTE A;  4B4N A;  2M8N A;  5JPA A;  4U0F A;  1EM9 A;  4E92 A;  2PWM A;  4J93 A;  2JPR A;  1M9C C;  1M9Y C;  2X2D D;  2XDE A;  5HGK A;  1M9F C;  1E6J P;  4INB A;  2GON A;  2M8L A;  4HTW A;  2PXR C;  2XGU A;  2M8P A;  2GOL B;  3H47 A;  2WLV A;  2XGV A;  2KGF A;  4E91 A;  2EIA A;  4QNB A;  4XFX A;  4U0A A;  3H4E A;  1U7K A;  4U0E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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