1M9YC

X-ray crystal structure of cyclophilin a/hiv-1 ca n-terminal domain (1-146) m-type h87a,g89a complex.
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVAAAPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cyclophilin A
publication title Structural insights into the catalytic mechanism of cyclophilin A
pubmed doi rcsb
source organism Homo sapiens
molecule tags Isomerase/viral protein
total genus 48
structure length 146
sequence length 146
chains with identical sequence D, G, H
ec nomenclature
pdb deposition date 2002-07-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 1m9yC00
1EM9A 2LF4A 5HGMA 2X2DD 5JPAA 1E6JP 2X83A 1AFVA 3NTEA 5HGOA 4U0FA 2PXRC 4XRQA 4XFZA 3H4EA 1U7KA 3H47A 4U0BA 4U0EA 2EIAA 4B4NA 1GWPA 4NX4C 2Y4ZA 1M9YC 4INBA 2XGYA 2XDEA 4PH3A 1M9EC 1M9FC 1M9XC 4PH2A 1QRJA 2V4XA 2GOLB 4XFYA 3P05A 4LQWC 1G03A 1EIAA 2M8PA 2M8LA 5HGKA 4J93A 1L6NA 2JPRA 2X82A 1M9DC 2XGUA 4HTWA 4XROA 5HGNA 2XGVA 1AK4C 2WLVA 1M9CC 2M8NA 4E92A 3MGEA 4QNBA 4DGEC 4WYMA 4U0AA 4PH0A 2GONA 4U0DA 2WLVB 4DGAC 2KGFA 4XFXA 3BP9A 4U0CA 1P7NA 5HGLA 2PWOA 1D1DA 4E91A 2PWMA
chains in the Genus database with same CATH superfamily
1EM9A 2LF4A 5HGMA 2X2DD 5JPAA 1E6JP 2X83A 1AFVA 3NTEA 5HGOA 4U0FA 2PXRC 4XRQA 4XFZA 3H4EA 1U7KA 3H47A 4U0BA 4U0EA 2EIAA 4B4NA 1GWPA 4NX4C 2Y4ZA 1M9YC 4INBA 2XGYA 2XDEA 4PH3A 1M9EC 1M9FC 1M9XC 4PH2A 1QRJA 2V4XA 2GOLB 4XFYA 3P05A 4LQWC 1G03A 1EIAA 2M8PA 2M8LA 5HGKA 4J93A 1L6NA 2JPRA 2X82A 1M9DC 2XGUA 4HTWA 4XROA 5HGNA 2XGVA 1AK4C 2WLVA 1M9CC 2M8NA 4E92A 3MGEA 4QNBA 4DGEC 4WYMA 4U0AA 4PH0A 2GONA 4U0DA 2WLVB 4DGAC 2KGFA 4XFXA 3BP9A 4U0CA 1P7NA 5HGLA 2PWOA 1D1DA 4E91A 2PWMA
chains in the Genus database with same CATH topology
1EM9A 2LF4A 5HGMA 2X2DD 5JPAA 1E6JP 2X83A 1AFVA 3NTEA 5HGOA 4U0FA 2PXRC 4XRQA 4XFZA 3H4EA 1U7KA 3H47A 4U0BA 4U0EA 2EIAA 4B4NA 1GWPA 4NX4C 2Y4ZA 1M9YC 4INBA 2XGYA 2XDEA 4PH3A 1M9EC 1M9FC 1M9XC 4PH2A 1QRJA 2V4XA 2GOLB 4XFYA 3P05A 4LQWC 1G03A 1EIAA 2M8PA 2M8LA 5HGKA 4J93A 1L6NA 2JPRA 2X82A 1M9DC 2XGUA 4HTWA 4XROA 5HGNA 2XGVA 1AK4C 2WLVA 1M9CC 2M8NA 4E92A 3MGEA 4QNBA 4DGEC 4WYMA 4U0AA 4PH0A 2GONA 4U0DA 2WLVB 4DGAC 2KGFA 4XFXA 3BP9A 4U0CA 1P7NA 5HGLA 2PWOA 1D1DA 4E91A 2PWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EM9 A;  2LF4 A;  5HGM A;  2X2D D;  5JPA A;  1E6J P;  2X83 A;  1AFV A;  3NTE A;  5HGO A;  4U0F A;  2PXR C;  4XRQ A;  4XFZ A;  3H4E A;  1U7K A;  3H47 A;  4U0B A;  4U0E A;  2EIA A;  4B4N A;  1GWP A;  4NX4 C;  2Y4Z A;  1M9Y C;  4INB A;  2XGY A;  2XDE A;  4PH3 A;  1M9E C;  1M9F C;  1M9X C;  4PH2 A;  1QRJ A;  2V4X A;  2GOL B;  4XFY A;  3P05 A;  4LQW C;  1G03 A;  1EIA A;  2M8P A;  2M8L A;  5HGK A;  4J93 A;  1L6N A;  2JPR A;  2X82 A;  1M9D C;  2XGU A;  4HTW A;  4XRO A;  5HGN A;  2XGV A;  1AK4 C;  2WLV A;  1M9C C;  2M8N A;  4E92 A;  3MGE A;  4QNB A;  4DGE C;  4WYM A;  4U0A A;  4PH0 A;  2GON A;  4U0D A;  2WLV B;  4DGA C;  2KGF A;  4XFX A;  3BP9 A;  4U0C A;  1P7N A;  5HGL A;  2PWO A;  1D1D A;  4E91 A;  2PWM A; 
#chains in the Genus database with same CATH topology
 1EM9 A;  2LF4 A;  5HGM A;  2X2D D;  5JPA A;  1E6J P;  2X83 A;  1AFV A;  3NTE A;  5HGO A;  4U0F A;  2PXR C;  4XRQ A;  4XFZ A;  3H4E A;  1U7K A;  3H47 A;  4U0B A;  4U0E A;  2EIA A;  4B4N A;  1GWP A;  4NX4 C;  2Y4Z A;  1M9Y C;  4INB A;  2XGY A;  2XDE A;  4PH3 A;  1M9E C;  1M9F C;  1M9X C;  4PH2 A;  1QRJ A;  2V4X A;  2GOL B;  4XFY A;  3P05 A;  4LQW C;  1G03 A;  1EIA A;  2M8P A;  2M8L A;  5HGK A;  4J93 A;  1L6N A;  2JPR A;  2X82 A;  1M9D C;  2XGU A;  4HTW A;  4XRO A;  5HGN A;  2XGV A;  1AK4 C;  2WLV A;  1M9C C;  2M8N A;  4E92 A;  3MGE A;  4QNB A;  4DGE C;  4WYM A;  4U0A A;  4PH0 A;  2GON A;  4U0D A;  2WLV B;  4DGA C;  2KGF A;  4XFX A;  3BP9 A;  4U0C A;  1P7N A;  5HGL A;  2PWO A;  1D1D A;  4E91 A;  2PWM A; 
#chains in the Genus database with same CATH homology
 1EM9 A;  2LF4 A;  5HGM A;  2X2D D;  5JPA A;  1E6J P;  2X83 A;  1AFV A;  3NTE A;  5HGO A;  4U0F A;  2PXR C;  4XRQ A;  4XFZ A;  3H4E A;  1U7K A;  3H47 A;  4U0B A;  4U0E A;  2EIA A;  4B4N A;  1GWP A;  4NX4 C;  2Y4Z A;  1M9Y C;  4INB A;  2XGY A;  2XDE A;  4PH3 A;  1M9E C;  1M9F C;  1M9X C;  4PH2 A;  1QRJ A;  2V4X A;  2GOL B;  4XFY A;  3P05 A;  4LQW C;  1G03 A;  1EIA A;  2M8P A;  2M8L A;  5HGK A;  4J93 A;  1L6N A;  2JPR A;  2X82 A;  1M9D C;  2XGU A;  4HTW A;  4XRO A;  5HGN A;  2XGV A;  1AK4 C;  2WLV A;  1M9C C;  2M8N A;  4E92 A;  3MGE A;  4QNB A;  4DGE C;  4WYM A;  4U0A A;  4PH0 A;  2GON A;  4U0D A;  2WLV B;  4DGA C;  2KGF A;  4XFX A;  3BP9 A;  4U0C A;  1P7N A;  5HGL A;  2PWO A;  1D1D A;  4E91 A;  2PWM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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