1M9YC

X-ray crystal structure of cyclophilin a/hiv-1 ca n-terminal domain (1-146) m-type h87a,g89a complex.
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVAAAPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/viral protein
source organism Homo sapiens
publication title Structural insights into the catalytic mechanism of cyclophilin A
pubmed doi rcsb
molecule keywords Cyclophilin A
total genus 48
structure length 146
sequence length 146
chains with identical sequence D, G, H
ec nomenclature
pdb deposition date 2002-07-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 1m9yC00
4DGEC 1U7KA 3NTEA 4E91A 4NX4C 2KGFA 3P05A 5HGMA 4PH0A 1M9DC 4E92A 4U0EA 2M8LA 4XROA 2X2DD 1AFVA 4U0FA 4INBA 4XRQA 2XGYA 4J93A 4HTWA 1EIAA 2PWMA 4LQWC 2X82A 2PXRC 2XGVA 4B4NA 1P7NA 2M8PA 4XFXA 1GWPA 1EM9A 5HGNA 5JPAA 2JPRA 2XDEA 1M9XC 5HGKA 4PH2A 4XFYA 2WLVB 4PH3A 1QRJA 3BP9A 2XGUA 4DGAC 4U0CA 4XFZA 2GOLB 1L6NA 2Y4ZA 1E6JP 4U0AA 2LF4A 3H4EA 2EIAA 3MGEA 5HGLA 2GONA 2PWOA 2WLVA 2M8NA 4U0DA 4QNBA 5HGOA 1M9FC 2V4XA 1AK4C 1M9CC 2X83A 4U0BA 1M9EC 1M9YC 4WYMA 1D1DA 3H47A 1G03A
chains in the Genus database with same CATH superfamily
4DGEC 1U7KA 3NTEA 4E91A 4NX4C 2KGFA 3P05A 5HGMA 4PH0A 1M9DC 4E92A 4U0EA 2M8LA 4XROA 2X2DD 1AFVA 4U0FA 4INBA 4XRQA 2XGYA 4J93A 4HTWA 1EIAA 2PWMA 4LQWC 2X82A 2PXRC 2XGVA 4B4NA 1P7NA 2M8PA 4XFXA 1GWPA 1EM9A 5HGNA 5JPAA 2JPRA 2XDEA 1M9XC 5HGKA 4PH2A 4XFYA 2WLVB 4PH3A 1QRJA 3BP9A 2XGUA 4DGAC 4U0CA 4XFZA 2GOLB 1L6NA 2Y4ZA 1E6JP 4U0AA 2LF4A 3H4EA 2EIAA 3MGEA 5HGLA 2GONA 2PWOA 2WLVA 2M8NA 4U0DA 4QNBA 5HGOA 1M9FC 2V4XA 1AK4C 1M9CC 2X83A 4U0BA 1M9EC 1M9YC 4WYMA 1D1DA 3H47A 1G03A
chains in the Genus database with same CATH topology
4DGEC 1U7KA 3NTEA 4E91A 4NX4C 2KGFA 3P05A 5HGMA 4PH0A 1M9DC 4E92A 4U0EA 2M8LA 4XROA 2X2DD 1AFVA 4U0FA 4INBA 4XRQA 2XGYA 4J93A 4HTWA 1EIAA 2PWMA 4LQWC 2X82A 2PXRC 2XGVA 4B4NA 1P7NA 2M8PA 4XFXA 1GWPA 1EM9A 5HGNA 5JPAA 2JPRA 2XDEA 1M9XC 5HGKA 4PH2A 4XFYA 2WLVB 4PH3A 1QRJA 3BP9A 2XGUA 4DGAC 4U0CA 4XFZA 2GOLB 1L6NA 2Y4ZA 1E6JP 4U0AA 2LF4A 3H4EA 2EIAA 3MGEA 5HGLA 2GONA 2PWOA 2WLVA 2M8NA 4U0DA 4QNBA 5HGOA 1M9FC 2V4XA 1AK4C 1M9CC 2X83A 4U0BA 1M9EC 1M9YC 4WYMA 1D1DA 3H47A 1G03A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DGE C;  1U7K A;  3NTE A;  4E91 A;  4NX4 C;  2KGF A;  3P05 A;  5HGM A;  4PH0 A;  1M9D C;  4E92 A;  4U0E A;  2M8L A;  4XRO A;  2X2D D;  1AFV A;  4U0F A;  4INB A;  4XRQ A;  2XGY A;  4J93 A;  4HTW A;  1EIA A;  2PWM A;  4LQW C;  2X82 A;  2PXR C;  2XGV A;  4B4N A;  1P7N A;  2M8P A;  4XFX A;  1GWP A;  1EM9 A;  5HGN A;  5JPA A;  2JPR A;  2XDE A;  1M9X C;  5HGK A;  4PH2 A;  4XFY A;  2WLV B;  4PH3 A;  1QRJ A;  3BP9 A;  2XGU A;  4DGA C;  4U0C A;  4XFZ A;  2GOL B;  1L6N A;  2Y4Z A;  1E6J P;  4U0A A;  2LF4 A;  3H4E A;  2EIA A;  3MGE A;  5HGL A;  2GON A;  2PWO A;  2WLV A;  2M8N A;  4U0D A;  4QNB A;  5HGO A;  1M9F C;  2V4X A;  1AK4 C;  1M9C C;  2X83 A;  4U0B A;  1M9E C;  1M9Y C;  4WYM A;  1D1D A;  3H47 A;  1G03 A; 
#chains in the Genus database with same CATH topology
 4DGE C;  1U7K A;  3NTE A;  4E91 A;  4NX4 C;  2KGF A;  3P05 A;  5HGM A;  4PH0 A;  1M9D C;  4E92 A;  4U0E A;  2M8L A;  4XRO A;  2X2D D;  1AFV A;  4U0F A;  4INB A;  4XRQ A;  2XGY A;  4J93 A;  4HTW A;  1EIA A;  2PWM A;  4LQW C;  2X82 A;  2PXR C;  2XGV A;  4B4N A;  1P7N A;  2M8P A;  4XFX A;  1GWP A;  1EM9 A;  5HGN A;  5JPA A;  2JPR A;  2XDE A;  1M9X C;  5HGK A;  4PH2 A;  4XFY A;  2WLV B;  4PH3 A;  1QRJ A;  3BP9 A;  2XGU A;  4DGA C;  4U0C A;  4XFZ A;  2GOL B;  1L6N A;  2Y4Z A;  1E6J P;  4U0A A;  2LF4 A;  3H4E A;  2EIA A;  3MGE A;  5HGL A;  2GON A;  2PWO A;  2WLV A;  2M8N A;  4U0D A;  4QNB A;  5HGO A;  1M9F C;  2V4X A;  1AK4 C;  1M9C C;  2X83 A;  4U0B A;  1M9E C;  1M9Y C;  4WYM A;  1D1D A;  3H47 A;  1G03 A; 
#chains in the Genus database with same CATH homology
 4DGE C;  1U7K A;  3NTE A;  4E91 A;  4NX4 C;  2KGF A;  3P05 A;  5HGM A;  4PH0 A;  1M9D C;  4E92 A;  4U0E A;  2M8L A;  4XRO A;  2X2D D;  1AFV A;  4U0F A;  4INB A;  4XRQ A;  2XGY A;  4J93 A;  4HTW A;  1EIA A;  2PWM A;  4LQW C;  2X82 A;  2PXR C;  2XGV A;  4B4N A;  1P7N A;  2M8P A;  4XFX A;  1GWP A;  1EM9 A;  5HGN A;  5JPA A;  2JPR A;  2XDE A;  1M9X C;  5HGK A;  4PH2 A;  4XFY A;  2WLV B;  4PH3 A;  1QRJ A;  3BP9 A;  2XGU A;  4DGA C;  4U0C A;  4XFZ A;  2GOL B;  1L6N A;  2Y4Z A;  1E6J P;  4U0A A;  2LF4 A;  3H4E A;  2EIA A;  3MGE A;  5HGL A;  2GON A;  2PWO A;  2WLV A;  2M8N A;  4U0D A;  4QNB A;  5HGO A;  1M9F C;  2V4X A;  1AK4 C;  1M9C C;  2X83 A;  4U0B A;  1M9E C;  1M9Y C;  4WYM A;  1D1D A;  3H47 A;  1G03 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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