2X2DD

Acetyl-cypa:hiv-1 n-term capsid domain complex
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/viral protein
molecule keywords PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
publication title Acetylation Regulates Cyclophilin a Catalysis, Immunosuppression and HIV Isomerisation
pubmed doi rcsb
source organism Homo sapiens
total genus 50
structure length 146
sequence length 146
chains with identical sequence E
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-01-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2x2dD00
2M8LA 2V4XA 1M9EC 1M9DC 1E6JP 1M9CC 1AK4C 2XGYA 1QRJA 2LF4A 5HGMA 4U0BA 2PWOA 2M8NA 4INBA 2X82A 3H4EA 4NX4C 4J93A 4DGEC 2PXRC 2EIAA 1M9FC 4HTWA 4U0AA 5HGOA 4XFYA 4U0CA 4PH2A 4U0DA 4QNBA 4PH3A 3NTEA 2XGVA 3H47A 2WLVB 1L6NA 4U0EA 4DGAC 2M8PA 3P05A 4XRQA 5JPAA 1M9YC 5HGLA 4E92A 1P7NA 5HGNA 5HGKA 2X83A 1AFVA 2JPRA 2PWMA 4B4NA 4E91A 1D1DA 2XGUA 2XDEA 1U7KA 2GOLB 1EM9A 2GONA 4XFXA 4WYMA 4U0FA 1G03A 4PH0A 1M9XC 3BP9A 4XROA 4XFZA 1GWPA 2Y4ZA 2KGFA 2WLVA 2X2DD 4LQWC 3MGEA 1EIAA
chains in the Genus database with same CATH superfamily
2M8LA 2V4XA 1M9EC 1M9DC 1E6JP 1M9CC 1AK4C 2XGYA 1QRJA 2LF4A 5HGMA 4U0BA 2PWOA 2M8NA 4INBA 2X82A 3H4EA 4NX4C 4J93A 4DGEC 2PXRC 2EIAA 1M9FC 4HTWA 4U0AA 5HGOA 4XFYA 4U0CA 4PH2A 4U0DA 4QNBA 4PH3A 3NTEA 2XGVA 3H47A 2WLVB 1L6NA 4U0EA 4DGAC 2M8PA 3P05A 4XRQA 5JPAA 1M9YC 5HGLA 4E92A 1P7NA 5HGNA 5HGKA 2X83A 1AFVA 2JPRA 2PWMA 4B4NA 4E91A 1D1DA 2XGUA 2XDEA 1U7KA 2GOLB 1EM9A 2GONA 4XFXA 4WYMA 4U0FA 1G03A 4PH0A 1M9XC 3BP9A 4XROA 4XFZA 1GWPA 2Y4ZA 2KGFA 2WLVA 2X2DD 4LQWC 3MGEA 1EIAA
chains in the Genus database with same CATH topology
2M8LA 2V4XA 1M9EC 1M9DC 1E6JP 1M9CC 1AK4C 2XGYA 1QRJA 2LF4A 5HGMA 4U0BA 2PWOA 2M8NA 4INBA 2X82A 3H4EA 4NX4C 4J93A 4DGEC 2PXRC 2EIAA 1M9FC 4HTWA 4U0AA 5HGOA 4XFYA 4U0CA 4PH2A 4U0DA 4QNBA 4PH3A 3NTEA 2XGVA 3H47A 2WLVB 1L6NA 4U0EA 4DGAC 2M8PA 3P05A 4XRQA 5JPAA 1M9YC 5HGLA 4E92A 1P7NA 5HGNA 5HGKA 2X83A 1AFVA 2JPRA 2PWMA 4B4NA 4E91A 1D1DA 2XGUA 2XDEA 1U7KA 2GOLB 1EM9A 2GONA 4XFXA 4WYMA 4U0FA 1G03A 4PH0A 1M9XC 3BP9A 4XROA 4XFZA 1GWPA 2Y4ZA 2KGFA 2WLVA 2X2DD 4LQWC 3MGEA 1EIAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M8L A;  2V4X A;  1M9E C;  1M9D C;  1E6J P;  1M9C C;  1AK4 C;  2XGY A;  1QRJ A;  2LF4 A;  5HGM A;  4U0B A;  2PWO A;  2M8N A;  4INB A;  2X82 A;  3H4E A;  4NX4 C;  4J93 A;  4DGE C;  2PXR C;  2EIA A;  1M9F C;  4HTW A;  4U0A A;  5HGO A;  4XFY A;  4U0C A;  4PH2 A;  4U0D A;  4QNB A;  4PH3 A;  3NTE A;  2XGV A;  3H47 A;  2WLV B;  1L6N A;  4U0E A;  4DGA C;  2M8P A;  3P05 A;  4XRQ A;  5JPA A;  1M9Y C;  5HGL A;  4E92 A;  1P7N A;  5HGN A;  5HGK A;  2X83 A;  1AFV A;  2JPR A;  2PWM A;  4B4N A;  4E91 A;  1D1D A;  2XGU A;  2XDE A;  1U7K A;  2GOL B;  1EM9 A;  2GON A;  4XFX A;  4WYM A;  4U0F A;  1G03 A;  4PH0 A;  1M9X C;  3BP9 A;  4XRO A;  4XFZ A;  1GWP A;  2Y4Z A;  2KGF A;  2WLV A;  2X2D D;  4LQW C;  3MGE A;  1EIA A; 
#chains in the Genus database with same CATH topology
 2M8L A;  2V4X A;  1M9E C;  1M9D C;  1E6J P;  1M9C C;  1AK4 C;  2XGY A;  1QRJ A;  2LF4 A;  5HGM A;  4U0B A;  2PWO A;  2M8N A;  4INB A;  2X82 A;  3H4E A;  4NX4 C;  4J93 A;  4DGE C;  2PXR C;  2EIA A;  1M9F C;  4HTW A;  4U0A A;  5HGO A;  4XFY A;  4U0C A;  4PH2 A;  4U0D A;  4QNB A;  4PH3 A;  3NTE A;  2XGV A;  3H47 A;  2WLV B;  1L6N A;  4U0E A;  4DGA C;  2M8P A;  3P05 A;  4XRQ A;  5JPA A;  1M9Y C;  5HGL A;  4E92 A;  1P7N A;  5HGN A;  5HGK A;  2X83 A;  1AFV A;  2JPR A;  2PWM A;  4B4N A;  4E91 A;  1D1D A;  2XGU A;  2XDE A;  1U7K A;  2GOL B;  1EM9 A;  2GON A;  4XFX A;  4WYM A;  4U0F A;  1G03 A;  4PH0 A;  1M9X C;  3BP9 A;  4XRO A;  4XFZ A;  1GWP A;  2Y4Z A;  2KGF A;  2WLV A;  2X2D D;  4LQW C;  3MGE A;  1EIA A; 
#chains in the Genus database with same CATH homology
 2M8L A;  2V4X A;  1M9E C;  1M9D C;  1E6J P;  1M9C C;  1AK4 C;  2XGY A;  1QRJ A;  2LF4 A;  5HGM A;  4U0B A;  2PWO A;  2M8N A;  4INB A;  2X82 A;  3H4E A;  4NX4 C;  4J93 A;  4DGE C;  2PXR C;  2EIA A;  1M9F C;  4HTW A;  4U0A A;  5HGO A;  4XFY A;  4U0C A;  4PH2 A;  4U0D A;  4QNB A;  4PH3 A;  3NTE A;  2XGV A;  3H47 A;  2WLV B;  1L6N A;  4U0E A;  4DGA C;  2M8P A;  3P05 A;  4XRQ A;  5JPA A;  1M9Y C;  5HGL A;  4E92 A;  1P7N A;  5HGN A;  5HGK A;  2X83 A;  1AFV A;  2JPR A;  2PWM A;  4B4N A;  4E91 A;  1D1D A;  2XGU A;  2XDE A;  1U7K A;  2GOL B;  1EM9 A;  2GON A;  4XFX A;  4WYM A;  4U0F A;  1G03 A;  4PH0 A;  1M9X C;  3BP9 A;  4XRO A;  4XFZ A;  1GWP A;  2Y4Z A;  2KGF A;  2WLV A;  2X2D D;  4LQW C;  3MGE A;  1EIA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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