2X2DD

Acetyl-cypa:hiv-1 n-term capsid domain complex
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/viral protein
source organism Homo sapiens
publication title Acetylation Regulates Cyclophilin a Catalysis, Immunosuppression and HIV Isomerisation
pubmed doi rcsb
molecule keywords PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
total genus 50
structure length 146
sequence length 146
chains with identical sequence E
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-01-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2x2dD00
4XRQA 2M8LA 2M8NA 2GONA 2WLVB 4XROA 2PXRC 4U0AA 3P05A 1GWPA 2Y4ZA 3H4EA 5HGKA 4U0EA 1D1DA 4XFZA 2WLVA 1M9YC 2M8PA 2XGUA 2XGYA 2XDEA 1M9XC 4U0DA 4E91A 1P7NA 2LF4A 4LQWC 2V4XA 2X83A 5HGOA 2JPRA 1AFVA 1M9CC 2X2DD 4QNBA 2EIAA 1G03A 1E6JP 2GOLB 3H47A 5HGLA 4J93A 1M9FC 3MGEA 4WYMA 1M9EC 1M9DC 2PWOA 1L6NA 4NX4C 4XFYA 2X82A 4U0BA 1EIAA 3NTEA 4PH3A 5HGNA 1EM9A 4U0FA 4HTWA 4B4NA 4INBA 4E92A 3BP9A 1QRJA 5JPAA 2PWMA 1U7KA 4PH2A 4PH0A 1AK4C 4DGAC 4U0CA 2KGFA 2XGVA 5HGMA 4DGEC 4XFXA
chains in the Genus database with same CATH superfamily
4XRQA 2M8LA 2M8NA 2GONA 2WLVB 4XROA 2PXRC 4U0AA 3P05A 1GWPA 2Y4ZA 3H4EA 5HGKA 4U0EA 1D1DA 4XFZA 2WLVA 1M9YC 2M8PA 2XGUA 2XGYA 2XDEA 1M9XC 4U0DA 4E91A 1P7NA 2LF4A 4LQWC 2V4XA 2X83A 5HGOA 2JPRA 1AFVA 1M9CC 2X2DD 4QNBA 2EIAA 1G03A 1E6JP 2GOLB 3H47A 5HGLA 4J93A 1M9FC 3MGEA 4WYMA 1M9EC 1M9DC 2PWOA 1L6NA 4NX4C 4XFYA 2X82A 4U0BA 1EIAA 3NTEA 4PH3A 5HGNA 1EM9A 4U0FA 4HTWA 4B4NA 4INBA 4E92A 3BP9A 1QRJA 5JPAA 2PWMA 1U7KA 4PH2A 4PH0A 1AK4C 4DGAC 4U0CA 2KGFA 2XGVA 5HGMA 4DGEC 4XFXA
chains in the Genus database with same CATH topology
4XRQA 2M8LA 2M8NA 2GONA 2WLVB 4XROA 2PXRC 4U0AA 3P05A 1GWPA 2Y4ZA 3H4EA 5HGKA 4U0EA 1D1DA 4XFZA 2WLVA 1M9YC 2M8PA 2XGUA 2XGYA 2XDEA 1M9XC 4U0DA 4E91A 1P7NA 2LF4A 4LQWC 2V4XA 2X83A 5HGOA 2JPRA 1AFVA 1M9CC 2X2DD 4QNBA 2EIAA 1G03A 1E6JP 2GOLB 3H47A 5HGLA 4J93A 1M9FC 3MGEA 4WYMA 1M9EC 1M9DC 2PWOA 1L6NA 4NX4C 4XFYA 2X82A 4U0BA 1EIAA 3NTEA 4PH3A 5HGNA 1EM9A 4U0FA 4HTWA 4B4NA 4INBA 4E92A 3BP9A 1QRJA 5JPAA 2PWMA 1U7KA 4PH2A 4PH0A 1AK4C 4DGAC 4U0CA 2KGFA 2XGVA 5HGMA 4DGEC 4XFXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XRQ A;  2M8L A;  2M8N A;  2GON A;  2WLV B;  4XRO A;  2PXR C;  4U0A A;  3P05 A;  1GWP A;  2Y4Z A;  3H4E A;  5HGK A;  4U0E A;  1D1D A;  4XFZ A;  2WLV A;  1M9Y C;  2M8P A;  2XGU A;  2XGY A;  2XDE A;  1M9X C;  4U0D A;  4E91 A;  1P7N A;  2LF4 A;  4LQW C;  2V4X A;  2X83 A;  5HGO A;  2JPR A;  1AFV A;  1M9C C;  2X2D D;  4QNB A;  2EIA A;  1G03 A;  1E6J P;  2GOL B;  3H47 A;  5HGL A;  4J93 A;  1M9F C;  3MGE A;  4WYM A;  1M9E C;  1M9D C;  2PWO A;  1L6N A;  4NX4 C;  4XFY A;  2X82 A;  4U0B A;  1EIA A;  3NTE A;  4PH3 A;  5HGN A;  1EM9 A;  4U0F A;  4HTW A;  4B4N A;  4INB A;  4E92 A;  3BP9 A;  1QRJ A;  5JPA A;  2PWM A;  1U7K A;  4PH2 A;  4PH0 A;  1AK4 C;  4DGA C;  4U0C A;  2KGF A;  2XGV A;  5HGM A;  4DGE C;  4XFX A; 
#chains in the Genus database with same CATH topology
 4XRQ A;  2M8L A;  2M8N A;  2GON A;  2WLV B;  4XRO A;  2PXR C;  4U0A A;  3P05 A;  1GWP A;  2Y4Z A;  3H4E A;  5HGK A;  4U0E A;  1D1D A;  4XFZ A;  2WLV A;  1M9Y C;  2M8P A;  2XGU A;  2XGY A;  2XDE A;  1M9X C;  4U0D A;  4E91 A;  1P7N A;  2LF4 A;  4LQW C;  2V4X A;  2X83 A;  5HGO A;  2JPR A;  1AFV A;  1M9C C;  2X2D D;  4QNB A;  2EIA A;  1G03 A;  1E6J P;  2GOL B;  3H47 A;  5HGL A;  4J93 A;  1M9F C;  3MGE A;  4WYM A;  1M9E C;  1M9D C;  2PWO A;  1L6N A;  4NX4 C;  4XFY A;  2X82 A;  4U0B A;  1EIA A;  3NTE A;  4PH3 A;  5HGN A;  1EM9 A;  4U0F A;  4HTW A;  4B4N A;  4INB A;  4E92 A;  3BP9 A;  1QRJ A;  5JPA A;  2PWM A;  1U7K A;  4PH2 A;  4PH0 A;  1AK4 C;  4DGA C;  4U0C A;  2KGF A;  2XGV A;  5HGM A;  4DGE C;  4XFX A; 
#chains in the Genus database with same CATH homology
 4XRQ A;  2M8L A;  2M8N A;  2GON A;  2WLV B;  4XRO A;  2PXR C;  4U0A A;  3P05 A;  1GWP A;  2Y4Z A;  3H4E A;  5HGK A;  4U0E A;  1D1D A;  4XFZ A;  2WLV A;  1M9Y C;  2M8P A;  2XGU A;  2XGY A;  2XDE A;  1M9X C;  4U0D A;  4E91 A;  1P7N A;  2LF4 A;  4LQW C;  2V4X A;  2X83 A;  5HGO A;  2JPR A;  1AFV A;  1M9C C;  2X2D D;  4QNB A;  2EIA A;  1G03 A;  1E6J P;  2GOL B;  3H47 A;  5HGL A;  4J93 A;  1M9F C;  3MGE A;  4WYM A;  1M9E C;  1M9D C;  2PWO A;  1L6N A;  4NX4 C;  4XFY A;  2X82 A;  4U0B A;  1EIA A;  3NTE A;  4PH3 A;  5HGN A;  1EM9 A;  4U0F A;  4HTW A;  4B4N A;  4INB A;  4E92 A;  3BP9 A;  1QRJ A;  5JPA A;  2PWM A;  1U7K A;  4PH2 A;  4PH0 A;  1AK4 C;  4DGA C;  4U0C A;  2KGF A;  2XGV A;  5HGM A;  4DGE C;  4XFX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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