2X2DD

Acetyl-cypa:hiv-1 n-term capsid domain complex
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Acetylation Regulates Cyclophilin a Catalysis, Immunosuppression and HIV Isomerisation
pubmed doi rcsb
molecule keywords PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
source organism Homo sapiens
molecule tags Isomerase/viral protein
total genus 50
structure length 146
sequence length 146
chains with identical sequence E
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2010-01-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2x2dD00
4U0BA 4XFZA 5HGNA 1EM9A 5HGOA 4XROA 1U7KA 1AK4C 4U0EA 4E92A 1M9CC 4U0AA 4J93A 2PWMA 1M9YC 3H4EA 2WLVB 4XFXA 4PH3A 2Y4ZA 2XGVA 5HGMA 4WYMA 2M8PA 2V4XA 2JPRA 1EIAA 1E6JP 4B4NA 3H47A 4DGEC 1GWPA 5HGLA 2X82A 1QRJA 3BP9A 4E91A 1AFVA 4PH2A 4QNBA 4NX4C 1M9XC 4U0FA 4DGAC 4HTWA 4XRQA 1P7NA 4U0DA 1G03A 2GOLB 1M9DC 2KGFA 2PWOA 4XFYA 2M8NA 3P05A 1M9EC 4LQWC 2EIAA 4U0CA 2LF4A 1D1DA 1L6NA 2WLVA 3MGEA 1M9FC 2X2DD 2GONA 5JPAA 2M8LA 2PXRC 2XGYA 5HGKA 4PH0A 3NTEA 4INBA 2XGUA 2XDEA 2X83A
chains in the Genus database with same CATH superfamily
4U0BA 4XFZA 5HGNA 1EM9A 5HGOA 4XROA 1U7KA 1AK4C 4U0EA 4E92A 1M9CC 4U0AA 4J93A 2PWMA 1M9YC 3H4EA 2WLVB 4XFXA 4PH3A 2Y4ZA 2XGVA 5HGMA 4WYMA 2M8PA 2V4XA 2JPRA 1EIAA 1E6JP 4B4NA 3H47A 4DGEC 1GWPA 5HGLA 2X82A 1QRJA 3BP9A 4E91A 1AFVA 4PH2A 4QNBA 4NX4C 1M9XC 4U0FA 4DGAC 4HTWA 4XRQA 1P7NA 4U0DA 1G03A 2GOLB 1M9DC 2KGFA 2PWOA 4XFYA 2M8NA 3P05A 1M9EC 4LQWC 2EIAA 4U0CA 2LF4A 1D1DA 1L6NA 2WLVA 3MGEA 1M9FC 2X2DD 2GONA 5JPAA 2M8LA 2PXRC 2XGYA 5HGKA 4PH0A 3NTEA 4INBA 2XGUA 2XDEA 2X83A
chains in the Genus database with same CATH topology
4U0BA 4XFZA 5HGNA 1EM9A 5HGOA 4XROA 1U7KA 1AK4C 4U0EA 4E92A 1M9CC 4U0AA 4J93A 2PWMA 1M9YC 3H4EA 2WLVB 4XFXA 4PH3A 2Y4ZA 2XGVA 5HGMA 4WYMA 2M8PA 2V4XA 2JPRA 1EIAA 1E6JP 4B4NA 3H47A 4DGEC 1GWPA 5HGLA 2X82A 1QRJA 3BP9A 4E91A 1AFVA 4PH2A 4QNBA 4NX4C 1M9XC 4U0FA 4DGAC 4HTWA 4XRQA 1P7NA 4U0DA 1G03A 2GOLB 1M9DC 2KGFA 2PWOA 4XFYA 2M8NA 3P05A 1M9EC 4LQWC 2EIAA 4U0CA 2LF4A 1D1DA 1L6NA 2WLVA 3MGEA 1M9FC 2X2DD 2GONA 5JPAA 2M8LA 2PXRC 2XGYA 5HGKA 4PH0A 3NTEA 4INBA 2XGUA 2XDEA 2X83A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U0B A;  4XFZ A;  5HGN A;  1EM9 A;  5HGO A;  4XRO A;  1U7K A;  1AK4 C;  4U0E A;  4E92 A;  1M9C C;  4U0A A;  4J93 A;  2PWM A;  1M9Y C;  3H4E A;  2WLV B;  4XFX A;  4PH3 A;  2Y4Z A;  2XGV A;  5HGM A;  4WYM A;  2M8P A;  2V4X A;  2JPR A;  1EIA A;  1E6J P;  4B4N A;  3H47 A;  4DGE C;  1GWP A;  5HGL A;  2X82 A;  1QRJ A;  3BP9 A;  4E91 A;  1AFV A;  4PH2 A;  4QNB A;  4NX4 C;  1M9X C;  4U0F A;  4DGA C;  4HTW A;  4XRQ A;  1P7N A;  4U0D A;  1G03 A;  2GOL B;  1M9D C;  2KGF A;  2PWO A;  4XFY A;  2M8N A;  3P05 A;  1M9E C;  4LQW C;  2EIA A;  4U0C A;  2LF4 A;  1D1D A;  1L6N A;  2WLV A;  3MGE A;  1M9F C;  2X2D D;  2GON A;  5JPA A;  2M8L A;  2PXR C;  2XGY A;  5HGK A;  4PH0 A;  3NTE A;  4INB A;  2XGU A;  2XDE A;  2X83 A; 
#chains in the Genus database with same CATH topology
 4U0B A;  4XFZ A;  5HGN A;  1EM9 A;  5HGO A;  4XRO A;  1U7K A;  1AK4 C;  4U0E A;  4E92 A;  1M9C C;  4U0A A;  4J93 A;  2PWM A;  1M9Y C;  3H4E A;  2WLV B;  4XFX A;  4PH3 A;  2Y4Z A;  2XGV A;  5HGM A;  4WYM A;  2M8P A;  2V4X A;  2JPR A;  1EIA A;  1E6J P;  4B4N A;  3H47 A;  4DGE C;  1GWP A;  5HGL A;  2X82 A;  1QRJ A;  3BP9 A;  4E91 A;  1AFV A;  4PH2 A;  4QNB A;  4NX4 C;  1M9X C;  4U0F A;  4DGA C;  4HTW A;  4XRQ A;  1P7N A;  4U0D A;  1G03 A;  2GOL B;  1M9D C;  2KGF A;  2PWO A;  4XFY A;  2M8N A;  3P05 A;  1M9E C;  4LQW C;  2EIA A;  4U0C A;  2LF4 A;  1D1D A;  1L6N A;  2WLV A;  3MGE A;  1M9F C;  2X2D D;  2GON A;  5JPA A;  2M8L A;  2PXR C;  2XGY A;  5HGK A;  4PH0 A;  3NTE A;  4INB A;  2XGU A;  2XDE A;  2X83 A; 
#chains in the Genus database with same CATH homology
 4U0B A;  4XFZ A;  5HGN A;  1EM9 A;  5HGO A;  4XRO A;  1U7K A;  1AK4 C;  4U0E A;  4E92 A;  1M9C C;  4U0A A;  4J93 A;  2PWM A;  1M9Y C;  3H4E A;  2WLV B;  4XFX A;  4PH3 A;  2Y4Z A;  2XGV A;  5HGM A;  4WYM A;  2M8P A;  2V4X A;  2JPR A;  1EIA A;  1E6J P;  4B4N A;  3H47 A;  4DGE C;  1GWP A;  5HGL A;  2X82 A;  1QRJ A;  3BP9 A;  4E91 A;  1AFV A;  4PH2 A;  4QNB A;  4NX4 C;  1M9X C;  4U0F A;  4DGA C;  4HTW A;  4XRQ A;  1P7N A;  4U0D A;  1G03 A;  2GOL B;  1M9D C;  2KGF A;  2PWO A;  4XFY A;  2M8N A;  3P05 A;  1M9E C;  4LQW C;  2EIA A;  4U0C A;  2LF4 A;  1D1D A;  1L6N A;  2WLV A;  3MGE A;  1M9F C;  2X2D D;  2GON A;  5JPA A;  2M8L A;  2PXR C;  2XGY A;  5HGK A;  4PH0 A;  3NTE A;  4INB A;  2XGU A;  2XDE A;  2X83 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...