1GMOA

Crystal structures of nk1-heparin complexes reveal the basis for nk1 activity and enable engineering of potent agonists of the met receptor
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
NTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCADRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of Nk1-Heparin Complexes Reveal the Basis for Nk1 Activity and Enable Engineering of Potent Agonists of the met Receptor
pubmed doi rcsb
molecule tags Hormone
source organism Homo sapiens
molecule keywords HEPATOCYTE GROWTH FACTOR
total genus 37
structure length 172
sequence length 172
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2001-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1gmoA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1gmoA01
4Z0FA 4BV7A 4A5TS 4HZHA 5CP9A 4BVWA 3HMTA 4Z0DA 2LL4M 1GP9A 1YXEA 1PK2A 2J8JA 4R1AA 4DURA 1A0HA 1B2IA 1W81A 2LL3A 1NL2A 1PMLA 2HPPP 4R19A 1I71A 5I25A 2K4RA 2PF2A 2Y8RA 1CEBA 1W8KA 2KJ4A 4BVVA 1JFNA 3ZLEA 2YIPA 5EODA 4BV5A 1PKRA 2HPQP 1NK1A 4UV6A 3U73A 4UAOA 2K13X 2KNFA 2K51A 3BT1A 3HN4A 2SPTA 4D3CA 2L0SA 3KIVA 1I5KA 5COEA 1PMKA 5CT3A 2Z8VA 4BVCA 1KIVA 2F83A 2J8LA 4R1BA 1KI0A 4NZQA 3K65A 3LAQA 4Z09A 4BVDA 2QJ4A 5CS5A 2DOHX 1CEAA 2YIOA 2HGFA 5HPGA 3ZWZA 1GMNA 5EOKA 1HKYA 3NXPA 1BHTA 2DOIA 2I9BA 4O03A 1HPJA 1HPKA 4APLA 2I9AA 2Q8BA 1URKA 2X2ZA 3HMSA 3E6PL 5CT2A 4IUAA 4APMA 5CT1A 2FEBA 3HMRA 1I8NA 2FD6A 1KDUA 4R1CA 5CSQA 3BT2A 1KRNA 2Q8AA 1TPKA 5CS3A 4CIKA 1NL1A 3SRJA 2PK4A 3MKPA 5CS9A 2YILA 5CS1A 1PK4A 3SRIA 4KIVA 4Z0EA 2PF1A 2Z8WA 1GMOA 3SP8A 2QJ2A 1Z40A
chains in the Genus database with same CATH superfamily
4Z0FA 4BV7A 4A5TS 4HZHA 5CP9A 4BVWA 2KL5A 3HMTA 4Z0DA 2LL4M 1GP9A 1YXEA 1PK2A 2J8JA 4R1AA 4DURA 1A0HA 1B2IA 1W81A 2LL3A 1NL2A 1PMLA 2HPPP 4R19A 1I71A 5I25A 2K4RA 2PF2A 2Y8RA 1CEBA 1W8KA 2KJ4A 4BVVA 1JFNA 3ZLEA 2YIPA 5EODA 4BV5A 1PKRA 2HPQP 1NK1A 4UV6A 3U73A 4UAOA 2K13X 2KNFA 2K51A 3BT1A 3HN4A 2SPTA 4D3CA 2L0SA 3KIVA 1I5KA 5COEA 1PMKA 5CT3A 2Z8VA 4BVCA 1KIVA 2F83A 2J8LA 4R1BA 1KI0A 4NZQA 3K65A 3LAQA 4Z09A 4BVDA 2QJ4A 5CS5A 2DOHX 4YIZA 1CEAA 2YIOA 2HGFA 5HPGA 3ZWZA 1GMNA 5EOKA 1HKYA 3NXPA 1BHTA 2DOIA 2I9BA 4O03A 1HPJA 1HPKA 4APLA 2I9AA 2Q8BA 1URKA 2X2ZA 3HMSA 3E6PL 5CT2A 4IUAA 4APMA 5CT1A 2FEBA 3HMRA 1I8NA 2FD6A 1KDUA 4YIVA 4R1CA 5CSQA 3BT2A 1KRNA 2Q8AA 1TPKA 5CS3A 4CIKA 1NL1A 3SRJA 2PK4A 3MKPA 5CS9A 2YILA 5CS1A 1PK4A 3SRIA 4KIVA 4Z0EA 2PF1A 2Z8WA 1GMOA 3SP8A 2QJ2A 1Z40A
chains in the Genus database with same CATH topology
4Z0FA 4BV7A 4A5TS 4HZHA 5CP9A 4BVWA 2KL5A 3HMTA 4Z0DA 2LL4M 1GP9A 1YXEA 1PK2A 2J8JA 4R1AA 4DURA 1A0HA 1B2IA 1W81A 2LL3A 1NL2A 1PMLA 2HPPP 4R19A 1I71A 5I25A 2K4RA 2PF2A 2Y8RA 1CEBA 1W8KA 2KJ4A 4BVVA 1JFNA 3ZLEA 2YIPA 5EODA 4BV5A 1PKRA 2HPQP 1NK1A 4UV6A 3U73A 4UAOA 2K13X 2KNFA 2K51A 3BT1A 3HN4A 2SPTA 4D3CA 2L0SA 3KIVA 1I5KA 5COEA 1PMKA 5CT3A 2Z8VA 4BVCA 1KIVA 2F83A 2J8LA 4R1BA 1KI0A 4NZQA 3K65A 3LAQA 4Z09A 4BVDA 2QJ4A 5CS5A 2DOHX 4YIZA 1CEAA 2YIOA 2HGFA 5HPGA 3ZWZA 1GMNA 5EOKA 1HKYA 3NXPA 1BHTA 2DOIA 2I9BA 4O03A 1HPJA 1HPKA 4APLA 2I9AA 2Q8BA 1URKA 2X2ZA 3HMSA 3E6PL 5CT2A 4IUAA 4APMA 5CT1A 2FEBA 3HMRA 1I8NA 2FD6A 1KDUA 4YIVA 4R1CA 5CSQA 3BT2A 1KRNA 2Q8AA 1TPKA 5CS3A 4CIKA 1NL1A 3SRJA 2PK4A 3MKPA 5CS9A 2YILA 5CS1A 1PK4A 3SRIA 4KIVA 4Z0EA 2PF1A 2Z8WA 1GMOA 3SP8A 2QJ2A 1Z40A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z0F A;  4BV7 A;  4A5T S;  4HZH A;  5CP9 A;  4BVW A;  3HMT A;  4Z0D A;  2LL4 M;  1GP9 A;  1YXE A;  1PK2 A;  2J8J A;  4R1A A;  4DUR A;  1A0H A;  1B2I A;  1W81 A;  2LL3 A;  1NL2 A;  1PML A;  2HPP P;  4R19 A;  1I71 A;  5I25 A;  2K4R A;  2PF2 A;  2Y8R A;  1CEB A;  1W8K A;  2KJ4 A;  4BVV A;  1JFN A;  3ZLE A;  2YIP A;  5EOD A;  4BV5 A;  1PKR A;  2HPQ P;  1NK1 A;  4UV6 A;  3U73 A;  4UAO A;  2K13 X;  2KNF A;  2K51 A;  3BT1 A;  3HN4 A;  2SPT A;  4D3C A;  2L0S A;  3KIV A;  1I5K A;  5COE A;  1PMK A;  5CT3 A;  2Z8V A;  4BVC A;  1KIV A;  2F83 A;  2J8L A;  4R1B A;  1KI0 A;  4NZQ A;  3K65 A;  3LAQ A;  4Z09 A;  4BVD A;  2QJ4 A;  5CS5 A;  2DOH X;  1CEA A;  2YIO A;  2HGF A;  5HPG A;  3ZWZ A;  1GMN A;  5EOK A;  1HKY A;  3NXP A;  1BHT A;  2DOI A;  2I9B A;  4O03 A;  1HPJ A;  1HPK A;  4APL A;  2I9A A;  2Q8B A;  1URK A;  2X2Z A;  3HMS A;  3E6P L;  5CT2 A;  4IUA A;  4APM A;  5CT1 A;  2FEB A;  3HMR A;  1I8N A;  2FD6 A;  1KDU A;  4R1C A;  5CSQ A;  3BT2 A;  1KRN A;  2Q8A A;  1TPK A;  5CS3 A;  4CIK A;  1NL1 A;  3SRJ A;  2PK4 A;  3MKP A;  5CS9 A;  2YIL A;  5CS1 A;  1PK4 A;  3SRI A;  4KIV A;  4Z0E A;  2PF1 A;  2Z8W A;  1GMO A;  3SP8 A;  2QJ2 A;  1Z40 A; 
#chains in the Genus database with same CATH topology
 4Z0F A;  4BV7 A;  4A5T S;  4HZH A;  5CP9 A;  4BVW A;  2KL5 A;  3HMT A;  4Z0D A;  2LL4 M;  1GP9 A;  1YXE A;  1PK2 A;  2J8J A;  4R1A A;  4DUR A;  1A0H A;  1B2I A;  1W81 A;  2LL3 A;  1NL2 A;  1PML A;  2HPP P;  4R19 A;  1I71 A;  5I25 A;  2K4R A;  2PF2 A;  2Y8R A;  1CEB A;  1W8K A;  2KJ4 A;  4BVV A;  1JFN A;  3ZLE A;  2YIP A;  5EOD A;  4BV5 A;  1PKR A;  2HPQ P;  1NK1 A;  4UV6 A;  3U73 A;  4UAO A;  2K13 X;  2KNF A;  2K51 A;  3BT1 A;  3HN4 A;  2SPT A;  4D3C A;  2L0S A;  3KIV A;  1I5K A;  5COE A;  1PMK A;  5CT3 A;  2Z8V A;  4BVC A;  1KIV A;  2F83 A;  2J8L A;  4R1B A;  1KI0 A;  4NZQ A;  3K65 A;  3LAQ A;  4Z09 A;  4BVD A;  2QJ4 A;  5CS5 A;  2DOH X;  4YIZ A;  1CEA A;  2YIO A;  2HGF A;  5HPG A;  3ZWZ A;  1GMN A;  5EOK A;  1HKY A;  3NXP A;  1BHT A;  2DOI A;  2I9B A;  4O03 A;  1HPJ A;  1HPK A;  4APL A;  2I9A A;  2Q8B A;  1URK A;  2X2Z A;  3HMS A;  3E6P L;  5CT2 A;  4IUA A;  4APM A;  5CT1 A;  2FEB A;  3HMR A;  1I8N A;  2FD6 A;  1KDU A;  4YIV A;  4R1C A;  5CSQ A;  3BT2 A;  1KRN A;  2Q8A A;  1TPK A;  5CS3 A;  4CIK A;  1NL1 A;  3SRJ A;  2PK4 A;  3MKP A;  5CS9 A;  2YIL A;  5CS1 A;  1PK4 A;  3SRI A;  4KIV A;  4Z0E A;  2PF1 A;  2Z8W A;  1GMO A;  3SP8 A;  2QJ2 A;  1Z40 A; 
#chains in the Genus database with same CATH homology
 4Z0F A;  4BV7 A;  4A5T S;  4HZH A;  5CP9 A;  4BVW A;  2KL5 A;  3HMT A;  4Z0D A;  2LL4 M;  1GP9 A;  1YXE A;  1PK2 A;  2J8J A;  4R1A A;  4DUR A;  1A0H A;  1B2I A;  1W81 A;  2LL3 A;  1NL2 A;  1PML A;  2HPP P;  4R19 A;  1I71 A;  5I25 A;  2K4R A;  2PF2 A;  2Y8R A;  1CEB A;  1W8K A;  2KJ4 A;  4BVV A;  1JFN A;  3ZLE A;  2YIP A;  5EOD A;  4BV5 A;  1PKR A;  2HPQ P;  1NK1 A;  4UV6 A;  3U73 A;  4UAO A;  2K13 X;  2KNF A;  2K51 A;  3BT1 A;  3HN4 A;  2SPT A;  4D3C A;  2L0S A;  3KIV A;  1I5K A;  5COE A;  1PMK A;  5CT3 A;  2Z8V A;  4BVC A;  1KIV A;  2F83 A;  2J8L A;  4R1B A;  1KI0 A;  4NZQ A;  3K65 A;  3LAQ A;  4Z09 A;  4BVD A;  2QJ4 A;  5CS5 A;  2DOH X;  4YIZ A;  1CEA A;  2YIO A;  2HGF A;  5HPG A;  3ZWZ A;  1GMN A;  5EOK A;  1HKY A;  3NXP A;  1BHT A;  2DOI A;  2I9B A;  4O03 A;  1HPJ A;  1HPK A;  4APL A;  2I9A A;  2Q8B A;  1URK A;  2X2Z A;  3HMS A;  3E6P L;  5CT2 A;  4IUA A;  4APM A;  5CT1 A;  2FEB A;  3HMR A;  1I8N A;  2FD6 A;  1KDU A;  4YIV A;  4R1C A;  5CSQ A;  3BT2 A;  1KRN A;  2Q8A A;  1TPK A;  5CS3 A;  4CIK A;  1NL1 A;  3SRJ A;  2PK4 A;  3MKP A;  5CS9 A;  2YIL A;  5CS1 A;  1PK4 A;  3SRI A;  4KIV A;  4Z0E A;  2PF1 A;  2Z8W A;  1GMO A;  3SP8 A;  2QJ2 A;  1Z40 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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