1O7DD

The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low ph activation
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
272
structure length
269
Chain Sequence
RDLVIQNEYLRARFDPNTGLLMELENLLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLFVSHWAQTHLVKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEPLNKEGSGLWVRGRHLVLLDKKETAAARHRLQAEMEVLAPQVVLAQG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
molecule tags Hydrolase
publication title The Structure of Bovine Lysosomal Alpha-Mannosidase Suggests a Novel Mechanism for Low-Ph Activation
pubmed doi rcsb
molecule keywords Lysosomal alpha-mannosidase
total genus 59
structure length 269
sequence length 272
ec nomenclature ec 3.2.1.24: Alpha-mannosidase.
pdb deposition date 2002-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF07748 Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.30 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Golgi alpha-mannosidase II; domain 4 1o7dD01
3EJRA 3BUPA 3BUDA 1PS3A 3D50A 3LVTA 3BVUA 3D51A 3EJUA 1QWUA 1R34A 2WYHA 3EJSA 1TQUA 1TQTA 2WYIA 3BUIA 3CV5A 3DX0A 5KBPA 3D52A 1HTYA 3BUBA 3EJTA 3BVXA 2F7PA 1TQSA 3CZSA 4K35A 2OW7A 3BLBA 3DX1A 1R33A 1HWWA 2FYVA 1QWNA 2F7QA 3BVVA 3BVWA 2F1BA 2OW6A 3CZNA 3D4ZA 2F7RA 2ALWA 1O7DD 3DDGA 3DX3A 1TQWA 1QX1A 1HXKA 1TQVA 2F7OA 3BVTA 3EJPA 3DX2A 3EJQA 3BUQA 4K3AA 2F1AA 3DX4A 3D4YA 2F18A 3DDFA
chains in the Genus database with same CATH superfamily
3EJUA 1N7OA 1AVLA 1TQUA 2WYIA 3ECQA 1LF6A 2OOVA 1RJOA 1RWFA 2ZL8A 1YGAA 3EJQA 2XSGA 1SNZA 3E7JA 1QAKA 5E1QA 3MV01 3TY1A 3QG0A 4OJZA 1AVKA 4BTYA 3X3YA 3D52A 1NS4A 1F9GA 3VD7A 1W5ZA 4KFDA 1DYUA 2JKPA 3DYMA 1K1YA 3NJVA 4KFFA 1JYWA 3IAPA 1I8QA 1LOHA 1KSIA 1N7NA 2ALWA 1X1JA 2OQEA 1HXKA 3T08A 3DX4A 1HM3A 3BUDA 2ZXQA 1W6CA 1D6UA 4FNQA 3DX0A 3IAQA 3N9HA 1W2ZA 2F7PA 2WVZA 2WCOA 1W3YA 3SEPA 1O7DD 1AV4A 2C10A 2F18A 3DDFA 1OJNA 3K25A 1QALA 4UFCA 4DUVA 1UG9A 2OOVC 3QFZA 1JOVA 2CWUA 3Q1NA 1NKGA 1RKYA 2CWTA 3D3IA 1W7CA 3VD3A 4FNVA 4BZFA 2FUTA 1OJOA 3W7SA 1N9EA 1SO0A 3BUPA 1V7VA 2WOHA 3W7TA 3AFJA 1LURA 1NS2A 1CB8A 1SIIA 3BVXA 3MUZ1 2HTBA 3W7XA 2WVXB 4KTRA 3T0BA 1K1XA 2F7OA 3BVTA 4BZHA 2BRVX 2CFLA 3QDEA 1D6YA 1NS8A 1LVNA 1J0MA 3LOYA 1R34A 3BGAA 3BUBA 4BTWA 1HN1A 3WVFA 2D73A 2OW7A 1MMZA 1JZ4A 1JYXA 1J0NA 1RWHA 3T2OA 1N7RA 2WGQA 3AMOB 4OK4A 1PS3A 3I3BA 3BVUA 3D51A 2CIQA 1HTYA 1HMWA 3VD9A 4DUXA 1F4AA 1JYVA 3NREA 3VSMA 4J5TA 1TQSA 3DX1A 3HIGA 1IQXA 2Y73A 3BUQA 2WZSA 3NBJA 1JZ8A 2EABA 2E2TA 1UI7A 3D50A 1EGUA 3A0OA 2XN2A 3CZJA 1JYNA 2WVYA 2JKEA 3WIRA 3EJTA 4BTXA 2CWVA 1L7JA 1X1IA 3BVVA 3OS7A 3CZNA 2F7RA 3BS6A 2JKAA 1NSMA 1TQVA 3T2QA 1H54A 1PX3A 3DECA 3DYOA 2XN0A 1A2VA 2EAEA 2EACA 3LVTA 1US1A 2FUQA 1MMYA 4RNLA 2CQSA 3NJXA 3KIIA 5JMFA 1LF9A 3BLBA 3RSYA 3ACTA 3KN4A 1RWCA 3E80A 3WFAA 1IVXA 1MMUA 1OJMA 3T0UA 2BRWA 3OB8A 4EV5A 3T2PA 1SIHA 3I3DA 3I3EA 1YQ2A 3WIQA 3WA3A 1F4HA 2WW0A 2OW6A 2WW3A 2XHNA 1V7WA 3S4BA 1NS0A 1K1WA 4TTGA 3E1F1 1JZ6A 1D6ZA 4BZGA 2F1AA 1WMNA 3S4CA 2D1WA 3EJSA 3VDCA 1Z45A 3DYPA 4KFEA 2EADA 1IU7A 1LXKA 2CQTA 3VD5A 4OK2A 2XN1A 3D4ZA 3DDGA 1JZ5A 5JMDA 4DUWA 4K3AA 1RWGA 2WW1A 2E2UA 4FNRA 3K5TA 4MMIA 2CG0A 2BRPA 2CFGA 3SX1A 3QFYA 3VSNA 1NS7A 3X3XA 1NSXA 3DCDA 3SXXA 1OACA 3VDAA 3MWXA 2FYVA 1L7KA 2F1BA 2CISA 3T09A 1NSVA 1HN0A 2CFKA 3DX3A 3BLCA 3EJPA 2CG1A 3W7WA 3S4AA 4MMHA 3EJRA 3WA2X 2X03A 1TU5A 3ALAA 3BUIA 1RW9A 1HMUA 2WVXA 1W4NA 3RRSA 1JZ7A 2Q1FA 3T0DA 1R33A 4FNTA 1OJPA 3X41A 2WW2A 1X1HA 3X3ZA 1JZ2A 1V7XA 3D4YA 2WOFA 1PU4A 5GW7A 2E24A 1EKMA 1TQTA 3CV5A 4FNUA 3X40A 1N7QA 1SPUA 4KTPA 1DP0A 2YX9A 2HTAA 3CZSA 4K35A 3AMOA 1HWWA 3VDBA 2BT3A 1TQWA 2WDAA 3AFLA 3DX2A 1WMOA 1N7PA 2C11A 1C82A 2YFNA 3X42A 2WYHA 2CIRA 4AQ0A 1NSSA 2WO0A 1IVUA 3ACSA 1WMPA 2YFOA 1JRQA 3W7UA 3MI6A 3OBAA 1MMXA 1IQYA 2F7QA 1HM2A 3NBBA 1RWAA 4BZEA 3MUY1 1TXKA 1ULVA 1IVVA 3MPHA 3IMHA 2CFDA 4NEIA 5A1AA 1NSZA 3J7HA 1W6GA 1QWUA 1F1SA 3HIIA 2W0QA 5KBPA 1MN0A 2RDYA 1LXMA 1PX4A 1NSUA 3T0AA 2CFWA 1NSRA 2E22A 2ZQ0A 1JZ3A 1QWNA 3A24A 4FNPA 3BVWA 3PGBA 4EV2A 3MV11 1QAFA 2OQEC 5CA3A 3VD4A 3HI7A 1QX1A 2Y74A 3S4DA 2PNCA 4FNSA 1IVWA 1UI8A 2E2VA
chains in the Genus database with same CATH topology
3EJRA 3BUPA 3BUDA 1PS3A 3D50A 3LVTA 3BVUA 3D51A 3EJUA 1QWUA 1R34A 2WYHA 3EJSA 1TQUA 1TQTA 2WYIA 3BUIA 3CV5A 3DX0A 5KBPA 3D52A 1HTYA 3BUBA 3EJTA 3BVXA 2F7PA 1TQSA 3CZSA 4K35A 2OW7A 3BLBA 3DX1A 1R33A 1HWWA 2FYVA 1QWNA 2F7QA 3BVVA 3BVWA 2F1BA 2OW6A 3CZNA 3D4ZA 2F7RA 2ALWA 1O7DD 3DDGA 3DX3A 1TQWA 1QX1A 1HXKA 1TQVA 2F7OA 3BVTA 3EJPA 3DX2A 3EJQA 3BUQA 4K3AA 2F1AA 3DX4A 3D4YA 2F18A 3DDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EJR A;  3BUP A;  3BUD A;  1PS3 A;  3D50 A;  3LVT A;  3BVU A;  3D51 A;  3EJU A;  1QWU A;  1R34 A;  2WYH A;  3EJS A;  1TQU A;  1TQT A;  2WYI A;  3BUI A;  3CV5 A;  3DX0 A;  5KBP A;  3D52 A;  1HTY A;  3BUB A;  3EJT A;  3BVX A;  2F7P A;  1TQS A;  3CZS A;  4K35 A;  2OW7 A;  3BLB A;  3DX1 A;  1R33 A;  1HWW A;  2FYV A;  1QWN A;  2F7Q A;  3BVV A;  3BVW A;  2F1B A;  2OW6 A;  3CZN A;  3D4Z A;  2F7R A;  2ALW A;  1O7D D;  3DDG A;  3DX3 A;  1TQW A;  1QX1 A;  1HXK A;  1TQV A;  2F7O A;  3BVT A;  3EJP A;  3DX2 A;  3EJQ A;  3BUQ A;  4K3A A;  2F1A A;  3DX4 A;  3D4Y A;  2F18 A;  3DDF A; 
#chains in the Genus database with same CATH topology
 3EJU A;  1N7O A;  1AVL A;  1TQU A;  2WYI A;  3ECQ A;  1LF6 A;  2OOV A;  1RJO A;  1RWF A;  2ZL8 A;  1YGA A;  3EJQ A;  2XSG A;  1SNZ A;  3E7J A;  1QAK A;  5E1Q A;  3MV0 1;  3TY1 A;  3QG0 A;  4OJZ A;  1AVK A;  4BTY A;  3X3Y A;  3D52 A;  1NS4 A;  1F9G A;  3VD7 A;  1W5Z A;  4KFD A;  1DYU A;  2JKP A;  3DYM A;  1K1Y A;  3NJV A;  4KFF A;  1JYW A;  3IAP A;  1I8Q A;  1LOH A;  1KSI A;  1N7N A;  2ALW A;  1X1J A;  2OQE A;  1HXK A;  3T08 A;  3DX4 A;  1HM3 A;  3BUD A;  2ZXQ A;  1W6C A;  1D6U A;  4FNQ A;  3DX0 A;  3IAQ A;  3N9H A;  1W2Z A;  2F7P A;  2WVZ A;  2WCO A;  1W3Y A;  3SEP A;  1O7D D;  1AV4 A;  2C10 A;  2F18 A;  3DDF A;  1OJN A;  3K25 A;  1QAL A;  4UFC A;  4DUV A;  1UG9 A;  2OOV C;  3QFZ A;  1JOV A;  2CWU A;  3Q1N A;  1NKG A;  1RKY A;  2CWT A;  3D3I A;  1W7C A;  3VD3 A;  4FNV A;  4BZF A;  2FUT A;  1OJO A;  3W7S A;  1N9E A;  1SO0 A;  3BUP A;  1V7V A;  2WOH A;  3W7T A;  3AFJ A;  1LUR A;  1NS2 A;  1CB8 A;  1SII A;  3BVX A;  3MUZ 1;  2HTB A;  3W7X A;  2WVX B;  4KTR A;  3T0B A;  1K1X A;  2F7O A;  3BVT A;  4BZH A;  2BRV X;  2CFL A;  3QDE A;  1D6Y A;  1NS8 A;  1LVN A;  1J0M A;  3LOY A;  1R34 A;  3BGA A;  3BUB A;  4BTW A;  1HN1 A;  3WVF A;  2D73 A;  2OW7 A;  1MMZ A;  1JZ4 A;  1JYX A;  1J0N A;  1RWH A;  3T2O A;  1N7R A;  2WGQ A;  3AMO B;  4OK4 A;  1PS3 A;  3I3B A;  3BVU A;  3D51 A;  2CIQ A;  1HTY A;  1HMW A;  3VD9 A;  4DUX A;  1F4A A;  1JYV A;  3NRE A;  3VSM A;  4J5T A;  1TQS A;  3DX1 A;  3HIG A;  1IQX A;  2Y73 A;  3BUQ A;  2WZS A;  3NBJ A;  1JZ8 A;  2EAB A;  2E2T A;  1UI7 A;  3D50 A;  1EGU A;  3A0O A;  2XN2 A;  3CZJ A;  1JYN A;  2WVY A;  2JKE A;  3WIR A;  3EJT A;  4BTX A;  2CWV A;  1L7J A;  1X1I A;  3BVV A;  3OS7 A;  3CZN A;  2F7R A;  3BS6 A;  2JKA A;  1NSM A;  1TQV A;  3T2Q A;  1H54 A;  1PX3 A;  3DEC A;  3DYO A;  2XN0 A;  1A2V A;  2EAE A;  2EAC A;  3LVT A;  1US1 A;  2FUQ A;  1MMY A;  4RNL A;  2CQS A;  3NJX A;  3KII A;  5JMF A;  1LF9 A;  3BLB A;  3RSY A;  3ACT A;  3KN4 A;  1RWC A;  3E80 A;  3WFA A;  1IVX A;  1MMU A;  1OJM A;  3T0U A;  2BRW A;  3OB8 A;  4EV5 A;  3T2P A;  1SIH A;  3I3D A;  3I3E A;  1YQ2 A;  3WIQ A;  3WA3 A;  1F4H A;  2WW0 A;  2OW6 A;  2WW3 A;  2XHN A;  1V7W A;  3S4B A;  1NS0 A;  1K1W A;  4TTG A;  3E1F 1;  1JZ6 A;  1D6Z A;  4BZG A;  2F1A A;  1WMN A;  3S4C A;  2D1W A;  3EJS A;  3VDC A;  1Z45 A;  3DYP A;  4KFE A;  2EAD A;  1IU7 A;  1LXK A;  2CQT A;  3VD5 A;  4OK2 A;  2XN1 A;  3D4Z A;  3DDG A;  1JZ5 A;  5JMD A;  4DUW A;  4K3A A;  1RWG A;  2WW1 A;  2E2U A;  4FNR A;  3K5T A;  4MMI A;  2CG0 A;  2BRP A;  2CFG A;  3SX1 A;  3QFY A;  3VSN A;  1NS7 A;  3X3X A;  1NSX A;  3DCD A;  3SXX A;  1OAC A;  3VDA A;  3MWX A;  2FYV A;  1L7K A;  2F1B A;  2CIS A;  3T09 A;  1NSV A;  1HN0 A;  2CFK A;  3DX3 A;  3BLC A;  3EJP A;  2CG1 A;  3W7W A;  3S4A A;  4MMH A;  3EJR A;  3WA2 X;  2X03 A;  1TU5 A;  3ALA A;  3BUI A;  1RW9 A;  1HMU A;  2WVX A;  1W4N A;  3RRS A;  1JZ7 A;  2Q1F A;  3T0D A;  1R33 A;  4FNT A;  1OJP A;  3X41 A;  2WW2 A;  1X1H A;  3X3Z A;  1JZ2 A;  1V7X A;  3D4Y A;  2WOF A;  1PU4 A;  5GW7 A;  2E24 A;  1EKM A;  1TQT A;  3CV5 A;  4FNU A;  3X40 A;  1N7Q A;  1SPU A;  4KTP A;  1DP0 A;  2YX9 A;  2HTA A;  3CZS A;  4K35 A;  3AMO A;  1HWW A;  3VDB A;  2BT3 A;  1TQW A;  2WDA A;  3AFL A;  3DX2 A;  1WMO A;  1N7P A;  2C11 A;  1C82 A;  2YFN A;  3X42 A;  2WYH A;  2CIR A;  4AQ0 A;  1NSS A;  2WO0 A;  1IVU A;  3ACS A;  1WMP A;  2YFO A;  1JRQ A;  3W7U A;  3MI6 A;  3OBA A;  1MMX A;  1IQY A;  2F7Q A;  1HM2 A;  3NBB A;  1RWA A;  4BZE A;  3MUY 1;  1TXK A;  1ULV A;  1IVV A;  3MPH A;  3IMH A;  2CFD A;  4NEI A;  5A1A A;  1NSZ A;  3J7H A;  1W6G A;  1QWU A;  1F1S A;  3HII A;  2W0Q A;  5KBP A;  1MN0 A;  2RDY A;  1LXM A;  1PX4 A;  1NSU A;  3T0A A;  2CFW A;  1NSR A;  2E22 A;  2ZQ0 A;  1JZ3 A;  1QWN A;  3A24 A;  4FNP A;  3BVW A;  3PGB A;  4EV2 A;  3MV1 1;  1QAF A;  2OQE C;  5CA3 A;  3VD4 A;  3HI7 A;  1QX1 A;  2Y74 A;  3S4D A;  2PNC A;  4FNS A;  1IVW A;  1UI8 A;  2E2V A; 
#chains in the Genus database with same CATH homology
 3EJR A;  3BUP A;  3BUD A;  1PS3 A;  3D50 A;  3LVT A;  3BVU A;  3D51 A;  3EJU A;  1QWU A;  1R34 A;  2WYH A;  3EJS A;  1TQU A;  1TQT A;  2WYI A;  3BUI A;  3CV5 A;  3DX0 A;  5KBP A;  3D52 A;  1HTY A;  3BUB A;  3EJT A;  3BVX A;  2F7P A;  1TQS A;  3CZS A;  4K35 A;  2OW7 A;  3BLB A;  3DX1 A;  1R33 A;  1HWW A;  2FYV A;  1QWN A;  2F7Q A;  3BVV A;  3BVW A;  2F1B A;  2OW6 A;  3CZN A;  3D4Z A;  2F7R A;  2ALW A;  1O7D D;  3DDG A;  3DX3 A;  1TQW A;  1QX1 A;  1HXK A;  1TQV A;  2F7O A;  3BVT A;  3EJP A;  3DX2 A;  3EJQ A;  3BUQ A;  4K3A A;  2F1A A;  3DX4 A;  3D4Y A;  2F18 A;  3DDF A; 
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similar chains in the pdb database (?% sequence similarity)

 
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