3BLCA

Crystal structure of the periplasmic domain of the escherichia coli yidc
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
290
structure length
280
Chain Sequence
QGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLTFRGAAYSTPDAAYAAYAFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLLVPRGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone,protein transport
molecule keywords Inner membrane protein oxaA
publication title Crystal Structure of the Major Periplasmic Domain of the Bacterial Membrane Protein Assembly Facilitator YidC.
pubmed doi rcsb
source organism Escherichia coli k12
total genus 56
structure length 280
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.90 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3blcA00
3WVFA 3BS6A 3BLCA
chains in the Genus database with same CATH superfamily
2F1BA 1NS0A 1IQYA 1QX1A 1DP0A 2CWUA 4FNVA 2PNCA 4BTXA 3X40A 3QFZA 1QAKA 3HIIA 2F7RA 1HM3A 1L7KA 1RWHA 3S4DA 4OK2A 1X1HA 1LF9A 1IVVA 2WVYA 3IAPA 3X42A 3X3XA 1AV4A 1HM2A 1JZ3A 1IVXA 3S4AA 3A0OA 2WOHA 2BT3A 1RWFA 3BVVA 2BRVX 2EAEA 2JKEA 3KIIA 5A1AA 3I3EA 4BTYA 4TTGA 2WVXB 3WIRA 2EABA 2CFKA 3N9HA 3QDEA 2WYHA 1TXKA 1HXKA 4FNSA 3SXXA 2WW1A 3W7SA 3MWXA 1X1JA 1HN1A 2CG1A 3BVXA 3RRSA 3K25A 3WA3A 1NKGA 1JZ2A 2ZXQA 3D51A 2ALWA 3PGBA 1OJOA 3DX0A 3D52A 3MV01 4NEIA 3SEPA 1HWWA 3LVTA 1MN0A 4UFCA 3VD7A 1J0MA 2C10A 3D4ZA 3EJSA 1MMXA 2OOVA 1LXKA 2CQTA 3D3IA 1LXMA 2FUQA 5JMDA 2Y74A 2E2VA 2WCOA 4EV2A 3EJTA 4KFFA 1NS7A 1NSUA 3WVFA 1IU7A 1OJMA 3QG0A 2X03A 1SNZA 2OW7A 3BGAA 2CFWA 1TU5A 4FNTA 3E1F1 3T0AA 1HTYA 1WMPA 4FNPA 1TQTA 2WW3A 2F7PA 4MMHA 3W7UA 1N7QA 1NSSA 2C11A 2WDAA 3OS7A 4OK4A 3OBAA 2WW0A 1UI8A 1LOHA 3VDBA 2JKAA 1JZ8A 3WIQA 2CISA 3EJPA 2XSGA 3X41A 2XN1A 2EACA 2OW6A 1D6UA 1JZ7A 3I3BA 2CIRA 1ULVA 3KN4A 1TQUA 2XN0A 1OJNA 4KFDA 3X3ZA 4K35A 3TY1A 3MPHA 1EKMA 1RKYA 3DDFA 1NSMA 1PX4A 3IAQA 3BUDA 1SO0A 1IVUA 1N7RA 3DX4A 1OACA 2BRWA 3CZSA 2D73A 3IMHA 1QWNA 3AFLA 1LURA 1QWUA 2EADA 3VSMA 2ZL8A 3ALAA 3NBBA 1TQWA 1QALA 1JYXA 1K1WA 2OQEA 5GW7A 1CB8A 3Q1NA 1W6CA 3VSNA 3W7WA 3LOYA 3BUIA 1NS4A 1R34A 3WFAA 1YQ2A 3AMOA 3VDCA 1RWCA 1X1IA 2D1WA 3W7XA 5E1QA 4BZGA 4BZHA 1JZ4A 3A24A 2E2UA 2WVZA 1TQSA 2FYVA 1HMUA 2JKPA 2CFLA 3K5TA 3HIGA 4KTPA 3T0DA 3BS6A 4AQ0A 3NBJA 3EJRA 1SIHA 1NSXA 1TQVA 3CZNA 2OOVC 1F1SA 1JYWA 2Y73A 3T0UA 5CA3A 5JMFA 1UG9A 3BLCA 1AVLA 3NJVA 3WA2X 1D6ZA 3T09A 2YFOA 1QAFA 3OB8A 1L7JA 1HN0A 4BZFA 3D50A 1N9EA 1AVKA 1W5ZA 1C82A 4MMIA 3MUZ1 2F18A 2HTBA 3RSYA 4J5TA 2BRPA 2E24A 1RWGA 2YFNA 4FNUA 1F9GA 4DUVA 1NS2A 3VD4A 4DUWA 2WYIA 2CQSA 1UI7A 2RDYA 1N7PA 2XN2A 3T0BA 1F4AA 3X3YA 4DUXA 1KSIA 2F7QA 2Q1FA 1K1YA 3T2OA 1NSVA 3NJXA 1W6GA 1EGUA 3ACSA 3MV11 3EJQA 4KFEA 2F7OA 3CZJA 1W2ZA 3CV5A 2YX9A 3DYPA 1V7WA 3DX1A 3DECA 5KBPA 2CFGA 1JZ5A 1MMZA 3VD5A 2CFDA 1LF6A 3BUPA 3J7HA 3ACTA 2E2TA 2CIQA 2F1AA 3BUBA 1JYNA 1MMYA 2OQEC 1YGAA 3MUY1 3T2PA 1F4HA 3AMOB 4RNLA 1Z45A 4FNRA 3E80A 3T2QA 3DX3A 2CWVA 1NSZA 3VD9A 3VD3A 3BVUA 1SIIA 1V7VA 1IQXA 3DX2A 2W0QA 2CG0A 3BVWA 1JRQA 1JYVA 2WVXA 1N7NA 3S4BA 3HI7A 3BUQA 4KTRA 3EJUA 1NSRA 1PX3A 1RJOA 2FUTA 3W7TA 1R33A 1MMUA 3SX1A 2WO0A 1IVWA 4FNQA 4OJZA 1WMOA 4K3AA 2WW2A 2XHNA 3BLBA 3VDAA 1V7XA 1I8QA 1NS8A 1N7OA 2HTAA 3DYOA 1PU4A 1JOVA 3MI6A 4EV5A 1O7DD 3QFYA 3D4YA 1W3YA 1W4NA 3NREA 3DDGA 3E7JA 4BZEA 1RW9A 1A2VA 3ECQA 1WMNA 1K1XA 3DCDA 1JZ6A 1US1A 1PS3A 1HMWA 1OJPA 1J0NA 2CWTA 2WGQA 3T08A 3BVTA 1D6YA 3DYMA 2E22A 2ZQ0A 3AFJA 1H54A 1DYUA 3S4CA 3I3DA 1W7CA 2WOFA 2WZSA 1RWAA 1SPUA 4BTWA 1LVNA
chains in the Genus database with same CATH topology
2WVZA 2X03A 1NS0A 1SNZA 2CIQA 1JYNA 1MMYA 1DP0A 3BGAA 1HMUA 2JKPA 1YGAA 3E1F1 3MUY1 4FNVA 3T0AA 3T0DA 3BS6A 1F4HA 3T2PA 4AQ0A 4RNLA 2WW3A 1Z45A 4MMHA 1NSXA 1N7QA 1NSSA 3E80A 1HM3A 1F1SA 3T2QA 1JYWA 2WDAA 1L7KA 3OS7A 1NSZA 3VD9A 4OK4A 1RWHA 3OBAA 3VD3A 5JMFA 2WW0A 4OK2A 1X1HA 1UG9A 1LOHA 1LF9A 2WVYA 3BLCA 3IAPA 3VDBA 2JKAA 3NJVA 1HM2A 1JZ8A 1JZ3A 1JYVA 2CISA 2WVXA 1N7NA 3A0OA 2XSGA 3T09A 1JZ7A 1NSRA 1PX3A 3I3BA 2CIRA 1ULVA 3OB8A 1L7JA 1RWFA 1HN0A 4BZFA 2FUTA 2BRVX 2JKEA 1MMUA 1OJNA 3TY1A 5A1AA 1C82A 3I3EA 4OJZA 4MMIA 3MUZ1 2WVXB 4TTGA 2HTBA 2WW2A 4J5TA 2BRPA 2E24A 1RWGA 1TXKA 2XHNA 1F9GA 4DUVA 1NSMA 3VDAA 1PX4A 1NS2A 3IAQA 1SO0A 2WW1A 3VD4A 4DUWA 1I8QA 1NS8A 1N7OA 2HTAA 3DYOA 3MWXA 1X1JA 1JOVA 1HN1A 1W3YA 1N7RA 3NREA 2BRWA 3K25A 2D73A 3IMHA 3E7JA 4BZEA 3AFLA 1RW9A 1LURA 1N7PA 3ECQA 3T0BA 3VSMA 1F4AA 1K1XA 1NKGA 3DCDA 1JZ2A 1JZ6A 4DUXA 2ZXQA 1HMWA 1OJPA 2Q1FA 1K1YA 1J0NA 3T2OA 1NSVA 3NJXA 1JYXA 1K1WA 1EGUA 3T08A 1CB8A 1OJOA 3MV01 3MV11 3Q1NA 4NEIA 3SEPA 3VSNA 1MN0A 3DYMA 3CZJA 3VD7A 1J0MA 2E22A 2ZQ0A 1NS4A 3WFAA 1YQ2A 1MMXA 3DYPA 3VDCA 1LXKA 1LXMA 1RWCA 1X1IA 2FUQA 3DECA 5JMDA 3I3DA 2WCOA 1JZ5A 5E1QA 4BZGA 1MMZA 3VD5A 1NS7A 4BZHA 2WZSA 1LF6A 1JZ4A 1NSUA 1RWAA 3WVFA 3A24A 3J7HA 1OJMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVF A;  3BS6 A;  3BLC A; 
#chains in the Genus database with same CATH topology
 2F1B A;  1NS0 A;  1IQY A;  1QX1 A;  1DP0 A;  2CWU A;  4FNV A;  2PNC A;  4BTX A;  3X40 A;  3QFZ A;  1QAK A;  3HII A;  2F7R A;  1HM3 A;  1L7K A;  1RWH A;  3S4D A;  4OK2 A;  1X1H A;  1LF9 A;  1IVV A;  2WVY A;  3IAP A;  3X42 A;  3X3X A;  1AV4 A;  1HM2 A;  1JZ3 A;  1IVX A;  3S4A A;  3A0O A;  2WOH A;  2BT3 A;  1RWF A;  3BVV A;  2BRV X;  2EAE A;  2JKE A;  3KII A;  5A1A A;  3I3E A;  4BTY A;  4TTG A;  2WVX B;  3WIR A;  2EAB A;  2CFK A;  3N9H A;  3QDE A;  2WYH A;  1TXK A;  1HXK A;  4FNS A;  3SXX A;  2WW1 A;  3W7S A;  3MWX A;  1X1J A;  1HN1 A;  2CG1 A;  3BVX A;  3RRS A;  3K25 A;  3WA3 A;  1NKG A;  1JZ2 A;  2ZXQ A;  3D51 A;  2ALW A;  3PGB A;  1OJO A;  3DX0 A;  3D52 A;  3MV0 1;  4NEI A;  3SEP A;  1HWW A;  3LVT A;  1MN0 A;  4UFC A;  3VD7 A;  1J0M A;  2C10 A;  3D4Z A;  3EJS A;  1MMX A;  2OOV A;  1LXK A;  2CQT A;  3D3I A;  1LXM A;  2FUQ A;  5JMD A;  2Y74 A;  2E2V A;  2WCO A;  4EV2 A;  3EJT A;  4KFF A;  1NS7 A;  1NSU A;  3WVF A;  1IU7 A;  1OJM A;  3QG0 A;  2X03 A;  1SNZ A;  2OW7 A;  3BGA A;  2CFW A;  1TU5 A;  4FNT A;  3E1F 1;  3T0A A;  1HTY A;  1WMP A;  4FNP A;  1TQT A;  2WW3 A;  2F7P A;  4MMH A;  3W7U A;  1N7Q A;  1NSS A;  2C11 A;  2WDA A;  3OS7 A;  4OK4 A;  3OBA A;  2WW0 A;  1UI8 A;  1LOH A;  3VDB A;  2JKA A;  1JZ8 A;  3WIQ A;  2CIS A;  3EJP A;  2XSG A;  3X41 A;  2XN1 A;  2EAC A;  2OW6 A;  1D6U A;  1JZ7 A;  3I3B A;  2CIR A;  1ULV A;  3KN4 A;  1TQU A;  2XN0 A;  1OJN A;  4KFD A;  3X3Z A;  4K35 A;  3TY1 A;  3MPH A;  1EKM A;  1RKY A;  3DDF A;  1NSM A;  1PX4 A;  3IAQ A;  3BUD A;  1SO0 A;  1IVU A;  1N7R A;  3DX4 A;  1OAC A;  2BRW A;  3CZS A;  2D73 A;  3IMH A;  1QWN A;  3AFL A;  1LUR A;  1QWU A;  2EAD A;  3VSM A;  2ZL8 A;  3ALA A;  3NBB A;  1TQW A;  1QAL A;  1JYX A;  1K1W A;  2OQE A;  5GW7 A;  1CB8 A;  3Q1N A;  1W6C A;  3VSN A;  3W7W A;  3LOY A;  3BUI A;  1NS4 A;  1R34 A;  3WFA A;  1YQ2 A;  3AMO A;  3VDC A;  1RWC A;  1X1I A;  2D1W A;  3W7X A;  5E1Q A;  4BZG A;  4BZH A;  1JZ4 A;  3A24 A;  2E2U A;  2WVZ A;  1TQS A;  2FYV A;  1HMU A;  2JKP A;  2CFL A;  3K5T A;  3HIG A;  4KTP A;  3T0D A;  3BS6 A;  4AQ0 A;  3NBJ A;  3EJR A;  1SIH A;  1NSX A;  1TQV A;  3CZN A;  2OOV C;  1F1S A;  1JYW A;  2Y73 A;  3T0U A;  5CA3 A;  5JMF A;  1UG9 A;  3BLC A;  1AVL A;  3NJV A;  3WA2 X;  1D6Z A;  3T09 A;  2YFO A;  1QAF A;  3OB8 A;  1L7J A;  1HN0 A;  4BZF A;  3D50 A;  1N9E A;  1AVK A;  1W5Z A;  1C82 A;  4MMI A;  3MUZ 1;  2F18 A;  2HTB A;  3RSY A;  4J5T A;  2BRP A;  2E24 A;  1RWG A;  2YFN A;  4FNU A;  1F9G A;  4DUV A;  1NS2 A;  3VD4 A;  4DUW A;  2WYI A;  2CQS A;  1UI7 A;  2RDY A;  1N7P A;  2XN2 A;  3T0B A;  1F4A A;  3X3Y A;  4DUX A;  1KSI A;  2F7Q A;  2Q1F A;  1K1Y A;  3T2O A;  1NSV A;  3NJX A;  1W6G A;  1EGU A;  3ACS A;  3MV1 1;  3EJQ A;  4KFE A;  2F7O A;  3CZJ A;  1W2Z A;  3CV5 A;  2YX9 A;  3DYP A;  1V7W A;  3DX1 A;  3DEC A;  5KBP A;  2CFG A;  1JZ5 A;  1MMZ A;  3VD5 A;  2CFD A;  1LF6 A;  3BUP A;  3J7H A;  3ACT A;  2E2T A;  2CIQ A;  2F1A A;  3BUB A;  1JYN A;  1MMY A;  2OQE C;  1YGA A;  3MUY 1;  3T2P A;  1F4H A;  3AMO B;  4RNL A;  1Z45 A;  4FNR A;  3E80 A;  3T2Q A;  3DX3 A;  2CWV A;  1NSZ A;  3VD9 A;  3VD3 A;  3BVU A;  1SII A;  1V7V A;  1IQX A;  3DX2 A;  2W0Q A;  2CG0 A;  3BVW A;  1JRQ A;  1JYV A;  2WVX A;  1N7N A;  3S4B A;  3HI7 A;  3BUQ A;  4KTR A;  3EJU A;  1NSR A;  1PX3 A;  1RJO A;  2FUT A;  3W7T A;  1R33 A;  1MMU A;  3SX1 A;  2WO0 A;  1IVW A;  4FNQ A;  4OJZ A;  1WMO A;  4K3A A;  2WW2 A;  2XHN A;  3BLB A;  3VDA A;  1V7X A;  1I8Q A;  1NS8 A;  1N7O A;  2HTA A;  3DYO A;  1PU4 A;  1JOV A;  3MI6 A;  4EV5 A;  1O7D D;  3QFY A;  3D4Y A;  1W3Y A;  1W4N A;  3NRE A;  3DDG A;  3E7J A;  4BZE A;  1RW9 A;  1A2V A;  3ECQ A;  1WMN A;  1K1X A;  3DCD A;  1JZ6 A;  1US1 A;  1PS3 A;  1HMW A;  1OJP A;  1J0N A;  2CWT A;  2WGQ A;  3T08 A;  3BVT A;  1D6Y A;  3DYM A;  2E22 A;  2ZQ0 A;  3AFJ A;  1H54 A;  1DYU A;  3S4C A;  3I3D A;  1W7C A;  2WOF A;  2WZS A;  1RWA A;  1SPU A;  4BTW A;  1LVN A; 
#chains in the Genus database with same CATH homology
 2WVZ A;  2X03 A;  1NS0 A;  1SNZ A;  2CIQ A;  1JYN A;  1MMY A;  1DP0 A;  3BGA A;  1HMU A;  2JKP A;  1YGA A;  3E1F 1;  3MUY 1;  4FNV A;  3T0A A;  3T0D A;  3BS6 A;  1F4H A;  3T2P A;  4AQ0 A;  4RNL A;  2WW3 A;  1Z45 A;  4MMH A;  1NSX A;  1N7Q A;  1NSS A;  3E80 A;  1HM3 A;  1F1S A;  3T2Q A;  1JYW A;  2WDA A;  1L7K A;  3OS7 A;  1NSZ A;  3VD9 A;  4OK4 A;  1RWH A;  3OBA A;  3VD3 A;  5JMF A;  2WW0 A;  4OK2 A;  1X1H A;  1UG9 A;  1LOH A;  1LF9 A;  2WVY A;  3BLC A;  3IAP A;  3VDB A;  2JKA A;  3NJV A;  1HM2 A;  1JZ8 A;  1JZ3 A;  1JYV A;  2CIS A;  2WVX A;  1N7N A;  3A0O A;  2XSG A;  3T09 A;  1JZ7 A;  1NSR A;  1PX3 A;  3I3B A;  2CIR A;  1ULV A;  3OB8 A;  1L7J A;  1RWF A;  1HN0 A;  4BZF A;  2FUT A;  2BRV X;  2JKE A;  1MMU A;  1OJN A;  3TY1 A;  5A1A A;  1C82 A;  3I3E A;  4OJZ A;  4MMI A;  3MUZ 1;  2WVX B;  4TTG A;  2HTB A;  2WW2 A;  4J5T A;  2BRP A;  2E24 A;  1RWG A;  1TXK A;  2XHN A;  1F9G A;  4DUV A;  1NSM A;  3VDA A;  1PX4 A;  1NS2 A;  3IAQ A;  1SO0 A;  2WW1 A;  3VD4 A;  4DUW A;  1I8Q A;  1NS8 A;  1N7O A;  2HTA A;  3DYO A;  3MWX A;  1X1J A;  1JOV A;  1HN1 A;  1W3Y A;  1N7R A;  3NRE A;  2BRW A;  3K25 A;  2D73 A;  3IMH A;  3E7J A;  4BZE A;  3AFL A;  1RW9 A;  1LUR A;  1N7P A;  3ECQ A;  3T0B A;  3VSM A;  1F4A A;  1K1X A;  1NKG A;  3DCD A;  1JZ2 A;  1JZ6 A;  4DUX A;  2ZXQ A;  1HMW A;  1OJP A;  2Q1F A;  1K1Y A;  1J0N A;  3T2O A;  1NSV A;  3NJX A;  1JYX A;  1K1W A;  1EGU A;  3T08 A;  1CB8 A;  1OJO A;  3MV0 1;  3MV1 1;  3Q1N A;  4NEI A;  3SEP A;  3VSN A;  1MN0 A;  3DYM A;  3CZJ A;  3VD7 A;  1J0M A;  2E22 A;  2ZQ0 A;  1NS4 A;  3WFA A;  1YQ2 A;  1MMX A;  3DYP A;  3VDC A;  1LXK A;  1LXM A;  1RWC A;  1X1I A;  2FUQ A;  3DEC A;  5JMD A;  3I3D A;  2WCO A;  1JZ5 A;  5E1Q A;  4BZG A;  1MMZ A;  3VD5 A;  1NS7 A;  4BZH A;  2WZS A;  1LF6 A;  1JZ4 A;  1NSU A;  1RWA A;  3WVF A;  3A24 A;  3J7H A;  1OJM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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