3TY1A

Crystal structure of a putative aldose 1-epimerase (kpn_04629) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a resolution
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
384
structure length
384
Chain Sequence
GAKTWVLTNAEEGIDKGNWQINSDQLKVKDHAFSIEQKVLHGGKQEGSKILTIHSKDGLTITLSPTRGMNLLRIEGFGSRMGWDSPVKEVVNPAFINLESRNGLGWLEGFNEMMVRCGYEWTGHPVTADGQIYTLHGKAGNTPASLVEVEVADSAPYEIRIRGLVKESTFKKADLQTLTELRYVPGSNSFSLHDVLTNHADYPHDYQIIYHSNFGTPILEEGARFLAPISSISPFNDYAKSGLKTWQTYQGPTKDFDEMVFNIQPLADENHQTLAAVVNKAGDKGASIQFDTRQLPVLTLWKNTDTVKQGYVTGIEPGTSYAYPVTIERKQKRVKQLQPGASAQFDLTYTLLHDSAQVAAVEQKIAKIQGDNKVAENETPIAKE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical aldose 1-epimerase
publication title Crystal structure of a Hypothetical aldose 1-epimerase (KPN_04629) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.90 A resolution
rcsb
source organism Klebsiella pneumoniae subsp. pneumoniae mgh 78578
molecule tags Isomerase
total genus 108
structure length 384
sequence length 384
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14486 DUF4432 Domain of unknown function (DUF4432)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.80 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3ty1A00
3TY1A
chains in the Genus database with same CATH superfamily
1MMYA 1X1JA 3MV11 4TTGA 2XN1A 1MMXA 3VSNA 2D73A 2WVZA 3MPHA 1JZ2A 1JRQA 4FNRA 3W7SA 1X1IA 2OQEA 3HIGA 2PNCA 1NS7A 4OK4A 4DUXA 3W7XA 1TQTA 3N9HA 2WW0A 1NSMA 3CZJA 5KBPA 3X3XA 2HTBA 1IVUA 3X40A 1NKGA 3T2PA 3K25A 4EV2A 1W5ZA 4FNPA 4AQ0A 3W7TA 2JKPA 1EGUA 1PU4A 2W0QA 3BGAA 4DUWA 3J7HA 1ULVA 1HN0A 1V7XA 2YFNA 2CIQA 2EACA 1Z45A 1IVXA 4J5TA 3DX4A 2OW6A 3K5TA 2EABA 3PGBA 1HMWA 3CZSA 3IAPA 1LURA 3NBBA 1RWGA 3ACTA 2CQTA 1NSUA 1WMPA 1QX1A 1TQSA 3SXXA 2C10A 3DDFA 3RSYA 3KN4A 3S4BA 3AFJA 1K1XA 1TXKA 2WYHA 3D50A 1J0MA 2OOVC 2BRVX 3HI7A 2WW2A 3VD9A 1W2ZA 3BUPA 1RWCA 2CFDA 1N7OA 3S4CA 2F7OA 2JKEA 1W3YA 1MMZA 3T0BA 1HM2A 1J0NA 3Q1NA 2X03A 3T0DA 4FNQA 2XN0A 3WIRA 1OJNA 1JYWA 3EJQA 2C11A 1RWFA 1L7JA 3DX0A 2WVXB 3EJSA 1N7QA 1MN0A 2CWUA 3BUQA 3IMHA 3WFAA 2E24A 2WGQA 1RWAA 4BTYA 1JZ7A 1SIIA 2XHNA 3MUY1 1K1WA 4KFDA 3SX1A 1W4NA 1UI8A 2CISA 1N7RA 2OOVA 1YGAA 2E2TA 2WYIA 2XSGA 5CA3A 3S4AA 4NEIA 3BLCA 1LF6A 2BRPA 3QDEA 2ZL8A 3HIIA 1QWUA 4RNLA 3T09A 3D3IA 2FYVA 3VD3A 3D52A 3BUBA 1N9EA 2CFKA 2Y73A 4DUVA 3ACSA 1JYVA 3VDCA 1KSIA 1W6GA 4BTWA 3W7WA 5JMDA 4FNVA 1HM3A 1PX4A 2BT3A 2CWVA 2ALWA 1IQYA 1HN1A 1LXMA 4BZGA 1CB8A 3T0UA 2XN2A 1QALA 3NREA 3EJUA 1V7VA 3E7JA 1TQWA 3DX2A 1PS3A 2WZSA 1OJPA 3DX1A 3VD7A 1D6UA 3BS6A 4K35A 2YX9A 3BLBA 2CFWA 2CQSA 4FNUA 1H54A 1RJOA 3T2QA 1C82A 2CWTA 1QWNA 1OJMA 2Y74A 3X42A 2F1AA 1N7NA 3OB8A 1HTYA 1SO0A 3W7UA 1D6YA 1I8QA 3I3DA 1PX3A 1NS0A 3DDGA 1NSSA 3WA2X 1HXKA 4KTPA 3EJRA 2Q1FA 1EKMA 3X3YA 1UI7A 1X1HA 3MV01 2WVYA 3NJVA 3LVTA 2F7QA 3T08A 1R34A 2BRWA 4EV5A 4MMIA 3NJXA 2F1BA 3AFLA 4BZHA 1NS4A 3MI6A 1NS8A 1US1A 1JYXA 4BTXA 1NSRA 3ALAA 1F4HA 3DX3A 2HTAA 3D4YA 3IAQA 1JZ5A 5GW7A 1N7PA 1YQ2A 2WO0A 1LXKA 3X3ZA 1OJOA 1W6CA 2YFOA 3E1F1 3SEPA 3VDBA 3VSMA 3MWXA 3CZNA 1WMNA 1JZ6A 3BUIA 2WOHA 1RW9A 3RRSA 1O7DD 1SNZA 2E22A 3VD5A 3BVXA 2EADA 2JKAA 3DYOA 4UFCA 5JMFA 2CFLA 1TU5A 1TQVA 2CG0A 3I3BA 3BVVA 3BVUA 2WCOA 4MMHA 1AVLA 1JOVA 3E80A 1MMUA 4OJZA 1LOHA 2F7RA 3AMOA 3D4ZA 2E2VA 3A0OA 2ZXQA 1K1YA 1AV4A 3BUDA 3QG0A 1NSXA 3LOYA 4KFFA 1JZ4A 2WOFA 1A2VA 1QAKA 4KTRA 1R33A 2F7PA 3BVWA 3EJTA 4BZFA 2CFGA 3OBAA 1JZ8A 2WVXA 1SIHA 3MUZ1 3WIQA 1L7KA 1WMOA 5A1AA 1D6ZA 3QFZA 3EJPA 2FUQA 2CIRA 3S4DA 3I3EA 1AVKA 2CG1A 3KIIA 3NBJA 2E2UA 2FUTA 2RDYA 1NSZA 3DYPA 3QFYA 1W7CA 3CV5A 3TY1A 3X41A 3T0AA 4BZEA 2ZQ0A 4K3AA 1IVWA 3VD4A 1IVVA 3DYMA 1OACA 1SPUA 1RKYA 3T2OA 3DECA 1HMUA 1LF9A 1F4AA 2OW7A 1DYUA 2EAEA 2WW1A 1F9GA 1HWWA 4FNTA 3AMOB 1F1SA 3ECQA 2WW3A 1IU7A 1JZ3A 1QAFA 1TQUA 2WDAA 3D51A 4KFEA 4OK2A 2OQEC 3OS7A 1JYNA 1RWHA 3BVTA 5E1QA 1UG9A 1NSVA 4FNSA 3WA3A 1IQXA 2D1WA 1DP0A 1LVNA 3DCDA 3VDAA 1NS2A 3WVFA 2F18A 1V7WA 3A24A
chains in the Genus database with same CATH topology
1MMYA 1N7NA 1N7OA 2JKEA 1X1JA 3OB8A 1SO0A 1W3YA 1I8QA 1MMZA 1JZ4A 3T0BA 1HM2A 1J0NA 3MV11 3Q1NA 2X03A 3I3DA 1PX3A 3T0DA 1NS0A 4TTGA 1NSSA 1OJNA 1JYWA 1MMXA 2Q1FA 1RWFA 3VSNA 1X1HA 2D73A 3MV01 4BZFA 2WVZA 3OBAA 1JZ2A 2WVYA 1JZ8A 3NJVA 1L7JA 1X1IA 2WVXA 2WVXB 1N7QA 1MN0A 3MUZ1 1NS7A 3IMHA 1L7KA 3T08A 4OK4A 4DUXA 3WFAA 5A1AA 2E24A 1RWAA 2WW0A 2BRWA 1JZ7A 4MMIA 1NSMA 2CIRA 2FUQA 2XHNA 3CZJA 3I3EA 3NJXA 3MUY1 1K1WA 2HTBA 3AFLA 4BZHA 1NS4A 1NKGA 3T2PA 3K25A 1NS8A 2FUTA 2CISA 1N7RA 1YGAA 2XSGA 1NSZA 1JYXA 4NEIA 3DYPA 1NSRA 1F4HA 3BLCA 1LF6A 4AQ0A 2BRPA 3TY1A 2HTAA 2JKPA 1EGUA 3IAQA 3T0AA 4BZEA 2ZQ0A 3BGAA 1JZ5A 3VD4A 4RNLA 3T09A 4DUWA 1N7PA 3J7HA 1YQ2A 1ULVA 3DYMA 1LXKA 1HN0A 3VD3A 2CIQA 1OJOA 1Z45A 3T2OA 4DUVA 4J5TA 3E1F1 3SEPA 1JYVA 3DECA 1HMUA 1LF9A 3VDCA 1F4AA 3VDBA 3A24A 3VSMA 3MWXA 2WW1A 1F9GA 5JMDA 4FNVA 1JZ6A 1HM3A 1PX4A 1HMWA 1RW9A 3ECQA 1F1SA 2WW3A 1SNZA 3IAPA 1LURA 1JZ3A 2WDAA 1HN1A 1RWGA 1LXMA 2E22A 4BZGA 1CB8A 3VD5A 4OK2A 3OS7A 3NREA 2JKAA 1NSUA 3E7JA 1JYNA 1RWHA 3DYOA 5E1QA 5JMFA 1UG9A 1NSVA 1DP0A 2WZSA 3I3BA 1OJPA 3VD7A 2WCOA 4MMHA 3DCDA 1JOVA 3BS6A 3E80A 3VDAA 1MMUA 1NS2A 4OJZA 1K1XA 1TXKA 1LOHA 1J0MA 3T2QA 1C82A 2BRVX 3A0OA 3WVFA 2ZXQA 2WW2A 1K1YA 1OJMA 3VD9A 1RWCA 1NSXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TY1 A; 
#chains in the Genus database with same CATH topology
 1MMY A;  1X1J A;  3MV1 1;  4TTG A;  2XN1 A;  1MMX A;  3VSN A;  2D73 A;  2WVZ A;  3MPH A;  1JZ2 A;  1JRQ A;  4FNR A;  3W7S A;  1X1I A;  2OQE A;  3HIG A;  2PNC A;  1NS7 A;  4OK4 A;  4DUX A;  3W7X A;  1TQT A;  3N9H A;  2WW0 A;  1NSM A;  3CZJ A;  5KBP A;  3X3X A;  2HTB A;  1IVU A;  3X40 A;  1NKG A;  3T2P A;  3K25 A;  4EV2 A;  1W5Z A;  4FNP A;  4AQ0 A;  3W7T A;  2JKP A;  1EGU A;  1PU4 A;  2W0Q A;  3BGA A;  4DUW A;  3J7H A;  1ULV A;  1HN0 A;  1V7X A;  2YFN A;  2CIQ A;  2EAC A;  1Z45 A;  1IVX A;  4J5T A;  3DX4 A;  2OW6 A;  3K5T A;  2EAB A;  3PGB A;  1HMW A;  3CZS A;  3IAP A;  1LUR A;  3NBB A;  1RWG A;  3ACT A;  2CQT A;  1NSU A;  1WMP A;  1QX1 A;  1TQS A;  3SXX A;  2C10 A;  3DDF A;  3RSY A;  3KN4 A;  3S4B A;  3AFJ A;  1K1X A;  1TXK A;  2WYH A;  3D50 A;  1J0M A;  2OOV C;  2BRV X;  3HI7 A;  2WW2 A;  3VD9 A;  1W2Z A;  3BUP A;  1RWC A;  2CFD A;  1N7O A;  3S4C A;  2F7O A;  2JKE A;  1W3Y A;  1MMZ A;  3T0B A;  1HM2 A;  1J0N A;  3Q1N A;  2X03 A;  3T0D A;  4FNQ A;  2XN0 A;  3WIR A;  1OJN A;  1JYW A;  3EJQ A;  2C11 A;  1RWF A;  1L7J A;  3DX0 A;  2WVX B;  3EJS A;  1N7Q A;  1MN0 A;  2CWU A;  3BUQ A;  3IMH A;  3WFA A;  2E24 A;  2WGQ A;  1RWA A;  4BTY A;  1JZ7 A;  1SII A;  2XHN A;  3MUY 1;  1K1W A;  4KFD A;  3SX1 A;  1W4N A;  1UI8 A;  2CIS A;  1N7R A;  2OOV A;  1YGA A;  2E2T A;  2WYI A;  2XSG A;  5CA3 A;  3S4A A;  4NEI A;  3BLC A;  1LF6 A;  2BRP A;  3QDE A;  2ZL8 A;  3HII A;  1QWU A;  4RNL A;  3T09 A;  3D3I A;  2FYV A;  3VD3 A;  3D52 A;  3BUB A;  1N9E A;  2CFK A;  2Y73 A;  4DUV A;  3ACS A;  1JYV A;  3VDC A;  1KSI A;  1W6G A;  4BTW A;  3W7W A;  5JMD A;  4FNV A;  1HM3 A;  1PX4 A;  2BT3 A;  2CWV A;  2ALW A;  1IQY A;  1HN1 A;  1LXM A;  4BZG A;  1CB8 A;  3T0U A;  2XN2 A;  1QAL A;  3NRE A;  3EJU A;  1V7V A;  3E7J A;  1TQW A;  3DX2 A;  1PS3 A;  2WZS A;  1OJP A;  3DX1 A;  3VD7 A;  1D6U A;  3BS6 A;  4K35 A;  2YX9 A;  3BLB A;  2CFW A;  2CQS A;  4FNU A;  1H54 A;  1RJO A;  3T2Q A;  1C82 A;  2CWT A;  1QWN A;  1OJM A;  2Y74 A;  3X42 A;  2F1A A;  1N7N A;  3OB8 A;  1HTY A;  1SO0 A;  3W7U A;  1D6Y A;  1I8Q A;  3I3D A;  1PX3 A;  1NS0 A;  3DDG A;  1NSS A;  3WA2 X;  1HXK A;  4KTP A;  3EJR A;  2Q1F A;  1EKM A;  3X3Y A;  1UI7 A;  1X1H A;  3MV0 1;  2WVY A;  3NJV A;  3LVT A;  2F7Q A;  3T08 A;  1R34 A;  2BRW A;  4EV5 A;  4MMI A;  3NJX A;  2F1B A;  3AFL A;  4BZH A;  1NS4 A;  3MI6 A;  1NS8 A;  1US1 A;  1JYX A;  4BTX A;  1NSR A;  3ALA A;  1F4H A;  3DX3 A;  2HTA A;  3D4Y A;  3IAQ A;  1JZ5 A;  5GW7 A;  1N7P A;  1YQ2 A;  2WO0 A;  1LXK A;  3X3Z A;  1OJO A;  1W6C A;  2YFO A;  3E1F 1;  3SEP A;  3VDB A;  3VSM A;  3MWX A;  3CZN A;  1WMN A;  1JZ6 A;  3BUI A;  2WOH A;  1RW9 A;  3RRS A;  1O7D D;  1SNZ A;  2E22 A;  3VD5 A;  3BVX A;  2EAD A;  2JKA A;  3DYO A;  4UFC A;  5JMF A;  2CFL A;  1TU5 A;  1TQV A;  2CG0 A;  3I3B A;  3BVV A;  3BVU A;  2WCO A;  4MMH A;  1AVL A;  1JOV A;  3E80 A;  1MMU A;  4OJZ A;  1LOH A;  2F7R A;  3AMO A;  3D4Z A;  2E2V A;  3A0O A;  2ZXQ A;  1K1Y A;  1AV4 A;  3BUD A;  3QG0 A;  1NSX A;  3LOY A;  4KFF A;  1JZ4 A;  2WOF A;  1A2V A;  1QAK A;  4KTR A;  1R33 A;  2F7P A;  3BVW A;  3EJT A;  4BZF A;  2CFG A;  3OBA A;  1JZ8 A;  2WVX A;  1SIH A;  3MUZ 1;  3WIQ A;  1L7K A;  1WMO A;  5A1A A;  1D6Z A;  3QFZ A;  3EJP A;  2FUQ A;  2CIR A;  3S4D A;  3I3E A;  1AVK A;  2CG1 A;  3KII A;  3NBJ A;  2E2U A;  2FUT A;  2RDY A;  1NSZ A;  3DYP A;  3QFY A;  1W7C A;  3CV5 A;  3TY1 A;  3X41 A;  3T0A A;  4BZE A;  2ZQ0 A;  4K3A A;  1IVW A;  3VD4 A;  1IVV A;  3DYM A;  1OAC A;  1SPU A;  1RKY A;  3T2O A;  3DEC A;  1HMU A;  1LF9 A;  1F4A A;  2OW7 A;  1DYU A;  2EAE A;  2WW1 A;  1F9G A;  1HWW A;  4FNT A;  3AMO B;  1F1S A;  3ECQ A;  2WW3 A;  1IU7 A;  1JZ3 A;  1QAF A;  1TQU A;  2WDA A;  3D51 A;  4KFE A;  4OK2 A;  2OQE C;  3OS7 A;  1JYN A;  1RWH A;  3BVT A;  5E1Q A;  1UG9 A;  1NSV A;  4FNS A;  3WA3 A;  1IQX A;  2D1W A;  1DP0 A;  1LVN A;  3DCD A;  3VDA A;  1NS2 A;  3WVF A;  2F18 A;  1V7W A;  3A24 A; 
#chains in the Genus database with same CATH homology
 1MMY A;  1N7N A;  1N7O A;  2JKE A;  1X1J A;  3OB8 A;  1SO0 A;  1W3Y A;  1I8Q A;  1MMZ A;  1JZ4 A;  3T0B A;  1HM2 A;  1J0N A;  3MV1 1;  3Q1N A;  2X03 A;  3I3D A;  1PX3 A;  3T0D A;  1NS0 A;  4TTG A;  1NSS A;  1OJN A;  1JYW A;  1MMX A;  2Q1F A;  1RWF A;  3VSN A;  1X1H A;  2D73 A;  3MV0 1;  4BZF A;  2WVZ A;  3OBA A;  1JZ2 A;  2WVY A;  1JZ8 A;  3NJV A;  1L7J A;  1X1I A;  2WVX A;  2WVX B;  1N7Q A;  1MN0 A;  3MUZ 1;  1NS7 A;  3IMH A;  1L7K A;  3T08 A;  4OK4 A;  4DUX A;  3WFA A;  5A1A A;  2E24 A;  1RWA A;  2WW0 A;  2BRW A;  1JZ7 A;  4MMI A;  1NSM A;  2CIR A;  2FUQ A;  2XHN A;  3CZJ A;  3I3E A;  3NJX A;  3MUY 1;  1K1W A;  2HTB A;  3AFL A;  4BZH A;  1NS4 A;  1NKG A;  3T2P A;  3K25 A;  1NS8 A;  2FUT A;  2CIS A;  1N7R A;  1YGA A;  2XSG A;  1NSZ A;  1JYX A;  4NEI A;  3DYP A;  1NSR A;  1F4H A;  3BLC A;  1LF6 A;  4AQ0 A;  2BRP A;  3TY1 A;  2HTA A;  2JKP A;  1EGU A;  3IAQ A;  3T0A A;  4BZE A;  2ZQ0 A;  3BGA A;  1JZ5 A;  3VD4 A;  4RNL A;  3T09 A;  4DUW A;  1N7P A;  3J7H A;  1YQ2 A;  1ULV A;  3DYM A;  1LXK A;  1HN0 A;  3VD3 A;  2CIQ A;  1OJO A;  1Z45 A;  3T2O A;  4DUV A;  4J5T A;  3E1F 1;  3SEP A;  1JYV A;  3DEC A;  1HMU A;  1LF9 A;  3VDC A;  1F4A A;  3VDB A;  3A24 A;  3VSM A;  3MWX A;  2WW1 A;  1F9G A;  5JMD A;  4FNV A;  1JZ6 A;  1HM3 A;  1PX4 A;  1HMW A;  1RW9 A;  3ECQ A;  1F1S A;  2WW3 A;  1SNZ A;  3IAP A;  1LUR A;  1JZ3 A;  2WDA A;  1HN1 A;  1RWG A;  1LXM A;  2E22 A;  4BZG A;  1CB8 A;  3VD5 A;  4OK2 A;  3OS7 A;  3NRE A;  2JKA A;  1NSU A;  3E7J A;  1JYN A;  1RWH A;  3DYO A;  5E1Q A;  5JMF A;  1UG9 A;  1NSV A;  1DP0 A;  2WZS A;  3I3B A;  1OJP A;  3VD7 A;  2WCO A;  4MMH A;  3DCD A;  1JOV A;  3BS6 A;  3E80 A;  3VDA A;  1MMU A;  1NS2 A;  4OJZ A;  1K1X A;  1TXK A;  1LOH A;  1J0M A;  3T2Q A;  1C82 A;  2BRV X;  3A0O A;  3WVF A;  2ZXQ A;  2WW2 A;  1K1Y A;  1OJM A;  3VD9 A;  1RWC A;  1NSX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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