3WVFA

Crystal structure of yidc from escherichia coli
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
473
structure length
448
Chain Sequence
GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
source organism Escherichia coli
publication title Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
pubmed doi rcsb
molecule keywords Membrane protein insertase YidC
total genus 115
structure length 448
sequence length 473
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02096 60KD_IMP 60Kd inner membrane protein
A PF14849 YidC_periplas YidC periplasmic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.90 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3wvfA01
3BLCA 3BS6A 3WVFA
chains in the Genus database with same CATH superfamily
3WIQA 2CFKA 1LVNA 2F7PA 3IAQA 1RW9A 3KIIA 1TXKA 3DX4A 2CWVA 2HTBA 1HM3A 1TQVA 1WMOA 3J7HA 3MWXA 1RJOA 3T0DA 3NJVA 2WYHA 2YFOA 1W6CA 3D52A 3SEPA 1OJOA 2XN0A 3DX3A 1LXMA 1R33A 2WW3A 1W4NA 4FNTA 3DX1A 1HMWA 3BLBA 1RKYA 1NSXA 3DYMA 3CZJA 3T09A 1HMUA 1MMXA 3OB8A 1UI8A 1HWWA 4FNVA 4OJZA 3CZSA 1PU4A 1JRQA 2E2VA 2WVXB 3X41A 1J0NA 5KBPA 2WW2A 3X3YA 3E7JA 2JKAA 1X1JA 1N7OA 3I3BA 3VD5A 1WMNA 2Q1FA 1NS2A 2OOVC 3VD4A 1QAKA 3KN4A 5CA3A 2D1WA 3A24A 1IQYA 2ZL8A 2F7RA 4EV5A 1R34A 2W0QA 1NKGA 3NJXA 2WW0A 1MMUA 1PS3A 1NSZA 3HIGA 2FUQA 3W7SA 1RWAA 1DYUA 5GW7A 3BUIA 3RSYA 2CWUA 1O7DD 1SNZA 3BVVA 1D6ZA 2BRVX 1HXKA 4BZHA 1PX3A 4J5TA 4BZGA 3W7TA 2OQEA 3MUY1 4UFCA 4FNRA 1UG9A 2JKPA 2CWTA 1NSSA 2CG0A 1V7XA 2CFDA 3RRSA 2C11A 3VDCA 1MMZA 3BUDA 4KFFA 2WZSA 1N7PA 2E2TA 1JZ3A 4TTGA 2E24A 3ACTA 1US1A 3D4ZA 1W6GA 3CV5A 4EV2A 3BUBA 3VSNA 3CZNA 3MUZ1 1SPUA 1TQSA 3I3EA 3BVXA 3WVFA 3EJTA 1OJMA 3WA3A 3HIIA 3ALAA 1N7QA 3AFJA 4MMHA 3EJSA 3T0UA 2FYVA 1RWGA 2WVYA 1L7JA 4DUXA 3X42A 1V7VA 3VSMA 3K5TA 2ZQ0A 1I8QA 1F9GA 1RWFA 4AQ0A 4BTWA 3DX2A 1W2ZA 1F1SA 2CG1A 1MMYA 1JYXA 3PGBA 3S4DA 2F7QA 1IVVA 1TQTA 1RWCA 1LF6A 2D73A 2EABA 2XHNA 2WO0A 2YX9A 1N9EA 2X03A 2F18A 2WVZA 3QFYA 3K25A 1QAFA 2OOVA 3LVTA 5E1QA 2CISA 1JYWA 3BS6A 1IVUA 1NSMA 3NBBA 2CIRA 3DYOA 1X1IA 1AVKA 2ZXQA 3T2QA 1TU5A 3D4YA 3E80A 3HI7A 3MPHA 1UI7A 3BVUA 3MV11 1YQ2A 3AFLA 4FNUA 2BRWA 3WIRA 3ECQA 3EJQA 1QWNA 1X1HA 1MN0A 3T08A 5JMFA 3AMOA 2HTAA 3NBJA 1L7KA 2YFNA 3BLCA 2CFGA 1LF9A 3D51A 4KFDA 3OS7A 1EKMA 3S4AA 2EACA 4KFEA 2ALWA 3BUQA 3T2PA 4FNPA 4BTXA 1IQXA 2OQEC 1SIHA 3DDFA 1AV4A 3QDEA 2RDYA 1W7CA 3VDBA 1JZ5A 1D6UA 2Y74A 1JZ7A 1LXKA 4DUWA 3IMHA 1JZ8A 1D6YA 1NSRA 2CQTA 3N9HA 3X40A 1K1WA 1IVXA 2Y73A 1QX1A 3X3ZA 2XSGA 3W7XA 1NS0A 1CB8A 1WMPA 3VD3A 3W7UA 3A0OA 1J0MA 1OJPA 1YGAA 1AVLA 3EJUA 1TQWA 1JOVA 2BT3A 2BRPA 1JYVA 2PNCA 1TQUA 1K1XA 3X3XA 2F1AA 1NSVA 4MMIA 3WFAA 1H54A 1NS8A 1JZ4A 3SXXA 1QWUA 3T0BA 1LOHA 3AMOB 3BGAA 3QFZA 2XN1A 1NS4A 3DYPA 3S4BA 2EAEA 4DUVA 1JZ6A 1EGUA 3BUPA 2F1BA 1V7WA 4BTYA 1DP0A 2XN2A 3S4CA 3BVTA 2OW6A 3MI6A 1PX4A 1KSIA 2WW1A 4RNLA 2WOFA 4NEIA 1N7NA 3Q1NA 1W5ZA 1JZ2A 1JYNA 3ACSA 4KTRA 3EJPA 3MV01 4FNQA 3W7WA 4FNSA 1W3YA 1HM2A 4OK2A 4KTPA 1HN0A 1SIIA 2JKEA 1ULVA 2EADA 4K35A 2WGQA 1Z45A 5A1AA 3DCDA 1C82A 3E1F1 1NSUA 2OW7A 3T0AA 5JMDA 3T2OA 3EJRA 1F4AA 3SX1A 2CQSA 1IU7A 1K1YA 4OK4A 1F4HA 2WYIA 1OACA 3VDAA 3DX0A 1N7RA 1RWHA 3D50A 3TY1A 4BZEA 1HTYA 1IVWA 2CFWA 1NS7A 3VD9A 3NREA 3QG0A 2WCOA 1QALA 3WA2X 2E22A 3D3IA 3I3DA 2WVXA 2FUTA 2WOHA 2WDAA 1OJNA 2E2UA 4BZFA 2C10A 3LOYA 1LURA 2CIQA 1A2VA 1SO0A 2F7OA 4K3AA 3DDGA 3OBAA 1HN1A 3BVWA 3DECA 3VD7A 2CFLA 3IAPA
chains in the Genus database with same CATH topology
3BS6A 1LOHA 3BGAA 4BZGA 1NSMA 2CIRA 3DYOA 1X1IA 3MUY1 2ZXQA 3IAQA 1RW9A 1TXKA 3T2QA 1NS4A 1UG9A 3E80A 3DYPA 2HTBA 2JKPA 4DUVA 1JZ6A 1EGUA 1HM3A 3MV11 1YQ2A 3J7HA 3MWXA 1DP0A 3AFLA 1NSSA 2BRWA 3VDCA 1PX4A 3T0DA 1MMZA 3ECQA 2WW1A 3NJVA 4RNLA 1X1HA 1MN0A 4NEIA 1N7NA 2WZSA 3Q1NA 3T08A 5JMFA 1JZ2A 1N7PA 3SEPA 1OJOA 1JYNA 2HTAA 1JZ3A 1L7KA 4TTGA 3MV01 1LXMA 1W3YA 2E24A 1HM2A 2WW3A 3BLCA 4OK2A 1HN0A 2JKEA 1ULVA 1HMWA 1LF9A 3VSNA 3MUZ1 3OS7A 1Z45A 1NSXA 5A1AA 3DCDA 1C82A 3E1F1 3DYMA 3CZJA 3T09A 3I3EA 1HMUA 1MMXA 1NSUA 3WVFA 3OB8A 3T0AA 1OJMA 3T2PA 5JMDA 1N7QA 3T2OA 1F4AA 4FNVA 4OJZA 4MMHA 2WVXB 3VDBA 1JZ5A 1K1YA 1RWGA 2WVYA 1J0NA 1L7JA 2WW2A 4OK4A 1F4HA 1LXKA 3E7JA 4DUWA 2JKAA 3VSMA 4DUXA 1JZ7A 2ZQ0A 1X1JA 1N7OA 3I3BA 3IMHA 1JZ8A 1I8QA 1NSRA 3VD5A 2Q1FA 3VDAA 1F9GA 1K1WA 1NS2A 1RWFA 3VD4A 4AQ0A 1N7RA 1RWHA 1F1SA 3TY1A 4BZEA 1MMYA 2XSGA 1JYXA 1NS0A 3A24A 1CB8A 1NS7A 3VD9A 3NREA 3VD3A 3A0OA 1JYWA 1NKGA 1RWCA 3NJXA 1LF6A 1J0MA 1OJPA 2D73A 2WCOA 2WW0A 1YGAA 1MMUA 2E22A 1NSZA 2WVXA 3I3DA 2FUTA 2XHNA 1JOVA 2WDAA 1OJNA 2BRPA 2FUQA 1JYVA 4BZFA 1RWAA 1K1XA 1LURA 1NSVA 2CIQA 2X03A 4MMIA 1SO0A 1SNZA 2WVZA 3OBAA 3WFAA 1HN1A 2BRVX 3K25A 1NS8A 3DECA 4BZHA 3VD7A 1JZ4A 5E1QA 1PX3A 3IAPA 4J5TA 2CISA 3T0BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BLC A;  3BS6 A;  3WVF A; 
#chains in the Genus database with same CATH topology
 3WIQ A;  2CFK A;  1LVN A;  2F7P A;  3IAQ A;  1RW9 A;  3KII A;  1TXK A;  3DX4 A;  2CWV A;  2HTB A;  1HM3 A;  1TQV A;  1WMO A;  3J7H A;  3MWX A;  1RJO A;  3T0D A;  3NJV A;  2WYH A;  2YFO A;  1W6C A;  3D52 A;  3SEP A;  1OJO A;  2XN0 A;  3DX3 A;  1LXM A;  1R33 A;  2WW3 A;  1W4N A;  4FNT A;  3DX1 A;  1HMW A;  3BLB A;  1RKY A;  1NSX A;  3DYM A;  3CZJ A;  3T09 A;  1HMU A;  1MMX A;  3OB8 A;  1UI8 A;  1HWW A;  4FNV A;  4OJZ A;  3CZS A;  1PU4 A;  1JRQ A;  2E2V A;  2WVX B;  3X41 A;  1J0N A;  5KBP A;  2WW2 A;  3X3Y A;  3E7J A;  2JKA A;  1X1J A;  1N7O A;  3I3B A;  3VD5 A;  1WMN A;  2Q1F A;  1NS2 A;  2OOV C;  3VD4 A;  1QAK A;  3KN4 A;  5CA3 A;  2D1W A;  3A24 A;  1IQY A;  2ZL8 A;  2F7R A;  4EV5 A;  1R34 A;  2W0Q A;  1NKG A;  3NJX A;  2WW0 A;  1MMU A;  1PS3 A;  1NSZ A;  3HIG A;  2FUQ A;  3W7S A;  1RWA A;  1DYU A;  5GW7 A;  3BUI A;  3RSY A;  2CWU A;  1O7D D;  1SNZ A;  3BVV A;  1D6Z A;  2BRV X;  1HXK A;  4BZH A;  1PX3 A;  4J5T A;  4BZG A;  3W7T A;  2OQE A;  3MUY 1;  4UFC A;  4FNR A;  1UG9 A;  2JKP A;  2CWT A;  1NSS A;  2CG0 A;  1V7X A;  2CFD A;  3RRS A;  2C11 A;  3VDC A;  1MMZ A;  3BUD A;  4KFF A;  2WZS A;  1N7P A;  2E2T A;  1JZ3 A;  4TTG A;  2E24 A;  3ACT A;  1US1 A;  3D4Z A;  1W6G A;  3CV5 A;  4EV2 A;  3BUB A;  3VSN A;  3CZN A;  3MUZ 1;  1SPU A;  1TQS A;  3I3E A;  3BVX A;  3WVF A;  3EJT A;  1OJM A;  3WA3 A;  3HII A;  3ALA A;  1N7Q A;  3AFJ A;  4MMH A;  3EJS A;  3T0U A;  2FYV A;  1RWG A;  2WVY A;  1L7J A;  4DUX A;  3X42 A;  1V7V A;  3VSM A;  3K5T A;  2ZQ0 A;  1I8Q A;  1F9G A;  1RWF A;  4AQ0 A;  4BTW A;  3DX2 A;  1W2Z A;  1F1S A;  2CG1 A;  1MMY A;  1JYX A;  3PGB A;  3S4D A;  2F7Q A;  1IVV A;  1TQT A;  1RWC A;  1LF6 A;  2D73 A;  2EAB A;  2XHN A;  2WO0 A;  2YX9 A;  1N9E A;  2X03 A;  2F18 A;  2WVZ A;  3QFY A;  3K25 A;  1QAF A;  2OOV A;  3LVT A;  5E1Q A;  2CIS A;  1JYW A;  3BS6 A;  1IVU A;  1NSM A;  3NBB A;  2CIR A;  3DYO A;  1X1I A;  1AVK A;  2ZXQ A;  3T2Q A;  1TU5 A;  3D4Y A;  3E80 A;  3HI7 A;  3MPH A;  1UI7 A;  3BVU A;  3MV1 1;  1YQ2 A;  3AFL A;  4FNU A;  2BRW A;  3WIR A;  3ECQ A;  3EJQ A;  1QWN A;  1X1H A;  1MN0 A;  3T08 A;  5JMF A;  3AMO A;  2HTA A;  3NBJ A;  1L7K A;  2YFN A;  3BLC A;  2CFG A;  1LF9 A;  3D51 A;  4KFD A;  3OS7 A;  1EKM A;  3S4A A;  2EAC A;  4KFE A;  2ALW A;  3BUQ A;  3T2P A;  4FNP A;  4BTX A;  1IQX A;  2OQE C;  1SIH A;  3DDF A;  1AV4 A;  3QDE A;  2RDY A;  1W7C A;  3VDB A;  1JZ5 A;  1D6U A;  2Y74 A;  1JZ7 A;  1LXK A;  4DUW A;  3IMH A;  1JZ8 A;  1D6Y A;  1NSR A;  2CQT A;  3N9H A;  3X40 A;  1K1W A;  1IVX A;  2Y73 A;  1QX1 A;  3X3Z A;  2XSG A;  3W7X A;  1NS0 A;  1CB8 A;  1WMP A;  3VD3 A;  3W7U A;  3A0O A;  1J0M A;  1OJP A;  1YGA A;  1AVL A;  3EJU A;  1TQW A;  1JOV A;  2BT3 A;  2BRP A;  1JYV A;  2PNC A;  1TQU A;  1K1X A;  3X3X A;  2F1A A;  1NSV A;  4MMI A;  3WFA A;  1H54 A;  1NS8 A;  1JZ4 A;  3SXX A;  1QWU A;  3T0B A;  1LOH A;  3AMO B;  3BGA A;  3QFZ A;  2XN1 A;  1NS4 A;  3DYP A;  3S4B A;  2EAE A;  4DUV A;  1JZ6 A;  1EGU A;  3BUP A;  2F1B A;  1V7W A;  4BTY A;  1DP0 A;  2XN2 A;  3S4C A;  3BVT A;  2OW6 A;  3MI6 A;  1PX4 A;  1KSI A;  2WW1 A;  4RNL A;  2WOF A;  4NEI A;  1N7N A;  3Q1N A;  1W5Z A;  1JZ2 A;  1JYN A;  3ACS A;  4KTR A;  3EJP A;  3MV0 1;  4FNQ A;  3W7W A;  4FNS A;  1W3Y A;  1HM2 A;  4OK2 A;  4KTP A;  1HN0 A;  1SII A;  2JKE A;  1ULV A;  2EAD A;  4K35 A;  2WGQ A;  1Z45 A;  5A1A A;  3DCD A;  1C82 A;  3E1F 1;  1NSU A;  2OW7 A;  3T0A A;  5JMD A;  3T2O A;  3EJR A;  1F4A A;  3SX1 A;  2CQS A;  1IU7 A;  1K1Y A;  4OK4 A;  1F4H A;  2WYI A;  1OAC A;  3VDA A;  3DX0 A;  1N7R A;  1RWH A;  3D50 A;  3TY1 A;  4BZE A;  1HTY A;  1IVW A;  2CFW A;  1NS7 A;  3VD9 A;  3NRE A;  3QG0 A;  2WCO A;  1QAL A;  3WA2 X;  2E22 A;  3D3I A;  3I3D A;  2WVX A;  2FUT A;  2WOH A;  2WDA A;  1OJN A;  2E2U A;  4BZF A;  2C10 A;  3LOY A;  1LUR A;  2CIQ A;  1A2V A;  1SO0 A;  2F7O A;  4K3A A;  3DDG A;  3OBA A;  1HN1 A;  3BVW A;  3DEC A;  3VD7 A;  2CFL A;  3IAP A; 
#chains in the Genus database with same CATH homology
 3BS6 A;  1LOH A;  3BGA A;  4BZG A;  1NSM A;  2CIR A;  3DYO A;  1X1I A;  3MUY 1;  2ZXQ A;  3IAQ A;  1RW9 A;  1TXK A;  3T2Q A;  1NS4 A;  1UG9 A;  3E80 A;  3DYP A;  2HTB A;  2JKP A;  4DUV A;  1JZ6 A;  1EGU A;  1HM3 A;  3MV1 1;  1YQ2 A;  3J7H A;  3MWX A;  1DP0 A;  3AFL A;  1NSS A;  2BRW A;  3VDC A;  1PX4 A;  3T0D A;  1MMZ A;  3ECQ A;  2WW1 A;  3NJV A;  4RNL A;  1X1H A;  1MN0 A;  4NEI A;  1N7N A;  2WZS A;  3Q1N A;  3T08 A;  5JMF A;  1JZ2 A;  1N7P A;  3SEP A;  1OJO A;  1JYN A;  2HTA A;  1JZ3 A;  1L7K A;  4TTG A;  3MV0 1;  1LXM A;  1W3Y A;  2E24 A;  1HM2 A;  2WW3 A;  3BLC A;  4OK2 A;  1HN0 A;  2JKE A;  1ULV A;  1HMW A;  1LF9 A;  3VSN A;  3MUZ 1;  3OS7 A;  1Z45 A;  1NSX A;  5A1A A;  3DCD A;  1C82 A;  3E1F 1;  3DYM A;  3CZJ A;  3T09 A;  3I3E A;  1HMU A;  1MMX A;  1NSU A;  3WVF A;  3OB8 A;  3T0A A;  1OJM A;  3T2P A;  5JMD A;  1N7Q A;  3T2O A;  1F4A A;  4FNV A;  4OJZ A;  4MMH A;  2WVX B;  3VDB A;  1JZ5 A;  1K1Y A;  1RWG A;  2WVY A;  1J0N A;  1L7J A;  2WW2 A;  4OK4 A;  1F4H A;  1LXK A;  3E7J A;  4DUW A;  2JKA A;  3VSM A;  4DUX A;  1JZ7 A;  2ZQ0 A;  1X1J A;  1N7O A;  3I3B A;  3IMH A;  1JZ8 A;  1I8Q A;  1NSR A;  3VD5 A;  2Q1F A;  3VDA A;  1F9G A;  1K1W A;  1NS2 A;  1RWF A;  3VD4 A;  4AQ0 A;  1N7R A;  1RWH A;  1F1S A;  3TY1 A;  4BZE A;  1MMY A;  2XSG A;  1JYX A;  1NS0 A;  3A24 A;  1CB8 A;  1NS7 A;  3VD9 A;  3NRE A;  3VD3 A;  3A0O A;  1JYW A;  1NKG A;  1RWC A;  3NJX A;  1LF6 A;  1J0M A;  1OJP A;  2D73 A;  2WCO A;  2WW0 A;  1YGA A;  1MMU A;  2E22 A;  1NSZ A;  2WVX A;  3I3D A;  2FUT A;  2XHN A;  1JOV A;  2WDA A;  1OJN A;  2BRP A;  2FUQ A;  1JYV A;  4BZF A;  1RWA A;  1K1X A;  1LUR A;  1NSV A;  2CIQ A;  2X03 A;  4MMI A;  1SO0 A;  1SNZ A;  2WVZ A;  3OBA A;  3WFA A;  1HN1 A;  2BRV X;  3K25 A;  1NS8 A;  3DEC A;  4BZH A;  3VD7 A;  1JZ4 A;  5E1Q A;  1PX3 A;  3IAP A;  4J5T A;  2CIS A;  3T0B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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