3WVFA

Crystal structure of yidc from escherichia coli
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
473
structure length
448
Chain Sequence
GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords Membrane protein insertase YidC
publication title Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
pubmed doi rcsb
source organism Escherichia coli
total genus 115
structure length 448
sequence length 473
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02096 60KD_IMP 60Kd inner membrane protein
A PF14849 YidC_periplas YidC periplasmic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.90 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3wvfA01
3BLCA 3BS6A 3WVFA
chains in the Genus database with same CATH superfamily
3NREA 4DUVA 3VD9A 1TQSA 3D51A 2F7QA 1A2VA 2F18A 1US1A 1X1JA 2CIRA 2HTAA 3J7HA 3MV11 3ACSA 1N7NA 1JZ4A 1LF6A 2X03A 3VDAA 3A24A 3S4BA 3T0UA 1N7OA 1Z45A 1JZ5A 1JZ3A 1WMPA 1DP0A 1RWFA 1L7JA 3LOYA 1V7WA 3WFAA 1HWWA 1D6ZA 2BRWA 3NJVA 1TXKA 2E2TA 1MMYA 1YGAA 2W0QA 1OJPA 2FYVA 1NS7A 3DDFA 4BTXA 3NBBA 1R33A 2E22A 3BS6A 4BTYA 3VD7A 3BUBA 3BVVA 2D73A 3D50A 2HTBA 1W5ZA 1QX1A 3BGAA 3MV01 1RWGA 3X41A 3T08A 4MMIA 3HIIA 3Q1NA 2BRVX 4FNRA 2WYHA 1NSVA 4K3AA 4KFFA 2EAEA 1HN1A 2WOHA 3AMOB 1NSRA 2WVXB 3W7UA 3BVTA 3DX0A 1JYWA 1JRQA 2E2UA 1JYVA 4OK4A 1MN0A 3VSMA 1HM3A 3VD3A 3KIIA 3W7SA 3BUPA 5CA3A 1EGUA 4BZGA 3QFZA 5JMFA 3X3ZA 2FUQA 2ZL8A 3DYMA 3IAPA 4KFEA 1LXKA 2JKAA 3VDCA 3T09A 4OK2A 1AV4A 2D1WA 3BVUA 2CFKA 3IMHA 1W6GA 2WDAA 2JKPA 1SNZA 3DYOA 3T0BA 1H54A 3LVTA 2CWUA 3I3EA 3WA2X 4BTWA 3AFLA 2FUTA 1NS2A 3DX3A 1MMUA 2YFNA 1F9GA 1JZ7A 3D3IA 4FNTA 1RW9A 2XN0A 3I3BA 1WMNA 3ACTA 3DYPA 3D4ZA 3D52A 4TTGA 1IVUA 1NSXA 1NKGA 1W7CA 2EADA 1TQTA 2Y74A 3T2QA 2CFWA 2WGQA 1NS8A 1IQXA 3NBJA 4J5TA 5KBPA 1W2ZA 5A1AA 2EACA 1W6CA 3BUDA 1W4NA 3BVWA 2WCOA 2ZQ0A 2CISA 1UI7A 3E80A 1N7PA 3DDGA 3K5TA 2WOFA 2OOVA 4NEIA 4KTRA 4EV2A 2Y73A 1IVVA 1TQWA 1JOVA 2ALWA 2OQEA 2WW1A 1SIIA 3IAQA 1IVWA 3VSNA 1LOHA 3X3XA 1NSSA 1PS3A 4OJZA 2WVYA 3QDEA 3VD5A 4RNLA 1NSMA 3PGBA 3DCDA 2WW0A 1QALA 3CZJA 4FNSA 1MMZA 1D6UA 1V7VA 3DECA 4K35A 1PX3A 2CFDA 1IVXA 4MMHA 2F7OA 2WYIA 3ALAA 3WVFA 1NS0A 1HN0A 1AVLA 3S4AA 1K1YA 1W3YA 2XN2A 1HXKA 2WW2A 2C11A 2F7PA 2CG0A 3DX2A 3T2OA 1IQYA 4DUWA 2CG1A 2BT3A 3SEPA 2BRPA 3MWXA 2F7RA 3T2PA 2C10A 3ECQA 1AVKA 1PX4A 2ZXQA 4BZEA 3QFYA 3WIRA 1SO0A 5JMDA 2WW3A 3MUY1 4UFCA 3AFJA 1R34A 2EABA 1OJNA 2JKEA 1J0MA 3MI6A 4BZFA 3EJRA 1F4HA 2OW6A 2CFLA 3EJTA 4FNQA 1K1WA 4FNVA 1N7RA 3W7TA 2XN1A 1HMUA 2E2VA 2WO0A 1OJMA 1K1XA 1KSIA 1UI8A 1LXMA 1DYUA 3E1F1 3OS7A 2CQSA 2YX9A 1RWAA 1QWUA 3S4CA 1EKMA 1HMWA 3CZSA 1RKYA 3EJUA 3I3DA 4KTPA 5E1QA 1D6YA 1RJOA 1JZ2A 3EJQA 2F1AA 3T0DA 2OW7A 2XHNA 1PU4A 1X1IA 2XSGA 1OJOA 2E24A 4KFDA 3RRSA 3N9HA 1O7DD 3CZNA 3WIQA 3BLBA 3EJPA 1MMXA 1QWNA 3HIGA 1F4AA 3HI7A 1SIHA 1C82A 1JYXA 2CQTA 2PNCA 1QAKA 3OBAA 3VDBA 4AQ0A 1JZ6A 1NSUA 3AMOA 3CV5A 3T0AA 2CFGA 1J0NA 1OACA 2WVXA 4EV5A 4BZHA 4FNPA 3BUQA 1RWHA 1V7XA 1SPUA 3X42A 2F1BA 5GW7A 3SX1A 3W7WA 3TY1A 1HTYA 3QG0A 1N7QA 1JZ8A 1CB8A 4DUXA 1N9EA 3KN4A 1TQVA 3A0OA 3MPHA 3K25A 1L7KA 1UG9A 1I8QA 1RWCA 2OOVC 1IU7A 1ULVA 2WZSA 3E7JA 2OQEC 3X40A 1WMOA 3EJSA 3VD4A 3DX4A 4FNUA 3NJXA 3W7XA 3OB8A 3RSYA 1LF9A 1NSZA 1NS4A 1X1HA 3DX1A 3MUZ1 3WA3A 1QAFA 3X3YA 1LVNA 1HM2A 1YQ2A 2CWTA 2CIQA 3BLCA 3BUIA 1JYNA 2YFOA 1TU5A 2RDYA 3S4DA 2CWVA 3SXXA 1LURA 3D4YA 1TQUA 2Q1FA 2WVZA 3BVXA 1F1SA
chains in the Genus database with same CATH topology
2FUQA 3IAPA 3DYMA 3NREA 4DUVA 1LXKA 1NS0A 1HN0A 2JKAA 3VDCA 3VD9A 1MMXA 3T09A 4OK2A 1K1YA 1W3YA 1F4AA 1C82A 1X1JA 2CIRA 3IMHA 1JYXA 2HTAA 3OBAA 3J7HA 3VDBA 4AQ0A 3MV11 2WW2A 2WDAA 2JKPA 1SNZA 1N7NA 3DYOA 1JZ4A 3T0BA 1JZ6A 1LF6A 2X03A 3VDAA 3I3EA 1NSUA 3A24A 3T2OA 4DUWA 3T0AA 1J0NA 1N7OA 1Z45A 2WVXA 4BZHA 1JZ5A 3AFLA 1JZ3A 3SEPA 1RWHA 2BRPA 1DP0A 2FUTA 3MWXA 1NS2A 1RWFA 3T2PA 1L7JA 1MMUA 3ECQA 3WFAA 1F9GA 1JZ7A 2BRWA 3TY1A 1PX4A 2ZXQA 4BZEA 5JMDA 1SO0A 1RW9A 2WW3A 3NJVA 1N7QA 1TXKA 3I3BA 3MUY1 1MMYA 1YGAA 1JZ8A 3DYPA 1OJPA 1OJNA 4TTGA 1NS7A 1NSXA 1NKGA 2JKEA 1J0MA 2E22A 3T2QA 4BZFA 3BS6A 3WVFA 1F4HA 1CB8A 1K1WA 4FNVA 3VD7A 4DUXA 1N7RA 1NS8A 4J5TA 1HMUA 3A0OA 5A1AA 3K25A 2D73A 1OJMA 1K1XA 2HTBA 2WCOA 2ZQ0A 1LXMA 2CISA 1L7KA 3E80A 1N7PA 1UG9A 1I8QA 3E1F1 4NEIA 3BGAA 1RWCA 3MV01 1ULVA 1RWGA 2WZSA 3E7JA 3OS7A 3T08A 1JOVA 4MMIA 2WW1A 3IAQA 1RWAA 3VSNA 3Q1NA 1LOHA 2BRVX 3VD4A 1HMWA 1NSSA 1NSVA 3NJXA 3I3DA 5E1QA 4OJZA 1HN1A 1JZ2A 2WVYA 3OB8A 3VD5A 1LF9A 1NSRA 1NSZA 4RNLA 2WVXB 1NS4A 1X1HA 3MUZ1 1NSMA 3T0DA 3DCDA 2WW0A 3CZJA 1HM2A 2XHNA 1YQ2A 1X1IA 1JYWA 1MMZA 2XSGA 2CIQA 1JYVA 4OK4A 1MN0A 1OJOA 3DECA 3BLCA 2E24A 3VSMA 1JYNA 1HM3A 3VD3A 1PX3A 1LURA 4MMHA 2Q1FA 1EGUA 2WVZA 4BZGA 1F1SA 5JMFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BLC A;  3BS6 A;  3WVF A; 
#chains in the Genus database with same CATH topology
 3NRE A;  4DUV A;  3VD9 A;  1TQS A;  3D51 A;  2F7Q A;  1A2V A;  2F18 A;  1US1 A;  1X1J A;  2CIR A;  2HTA A;  3J7H A;  3MV1 1;  3ACS A;  1N7N A;  1JZ4 A;  1LF6 A;  2X03 A;  3VDA A;  3A24 A;  3S4B A;  3T0U A;  1N7O A;  1Z45 A;  1JZ5 A;  1JZ3 A;  1WMP A;  1DP0 A;  1RWF A;  1L7J A;  3LOY A;  1V7W A;  3WFA A;  1HWW A;  1D6Z A;  2BRW A;  3NJV A;  1TXK A;  2E2T A;  1MMY A;  1YGA A;  2W0Q A;  1OJP A;  2FYV A;  1NS7 A;  3DDF A;  4BTX A;  3NBB A;  1R33 A;  2E22 A;  3BS6 A;  4BTY A;  3VD7 A;  3BUB A;  3BVV A;  2D73 A;  3D50 A;  2HTB A;  1W5Z A;  1QX1 A;  3BGA A;  3MV0 1;  1RWG A;  3X41 A;  3T08 A;  4MMI A;  3HII A;  3Q1N A;  2BRV X;  4FNR A;  2WYH A;  1NSV A;  4K3A A;  4KFF A;  2EAE A;  1HN1 A;  2WOH A;  3AMO B;  1NSR A;  2WVX B;  3W7U A;  3BVT A;  3DX0 A;  1JYW A;  1JRQ A;  2E2U A;  1JYV A;  4OK4 A;  1MN0 A;  3VSM A;  1HM3 A;  3VD3 A;  3KII A;  3W7S A;  3BUP A;  5CA3 A;  1EGU A;  4BZG A;  3QFZ A;  5JMF A;  3X3Z A;  2FUQ A;  2ZL8 A;  3DYM A;  3IAP A;  4KFE A;  1LXK A;  2JKA A;  3VDC A;  3T09 A;  4OK2 A;  1AV4 A;  2D1W A;  3BVU A;  2CFK A;  3IMH A;  1W6G A;  2WDA A;  2JKP A;  1SNZ A;  3DYO A;  3T0B A;  1H54 A;  3LVT A;  2CWU A;  3I3E A;  3WA2 X;  4BTW A;  3AFL A;  2FUT A;  1NS2 A;  3DX3 A;  1MMU A;  2YFN A;  1F9G A;  1JZ7 A;  3D3I A;  4FNT A;  1RW9 A;  2XN0 A;  3I3B A;  1WMN A;  3ACT A;  3DYP A;  3D4Z A;  3D52 A;  4TTG A;  1IVU A;  1NSX A;  1NKG A;  1W7C A;  2EAD A;  1TQT A;  2Y74 A;  3T2Q A;  2CFW A;  2WGQ A;  1NS8 A;  1IQX A;  3NBJ A;  4J5T A;  5KBP A;  1W2Z A;  5A1A A;  2EAC A;  1W6C A;  3BUD A;  1W4N A;  3BVW A;  2WCO A;  2ZQ0 A;  2CIS A;  1UI7 A;  3E80 A;  1N7P A;  3DDG A;  3K5T A;  2WOF A;  2OOV A;  4NEI A;  4KTR A;  4EV2 A;  2Y73 A;  1IVV A;  1TQW A;  1JOV A;  2ALW A;  2OQE A;  2WW1 A;  1SII A;  3IAQ A;  1IVW A;  3VSN A;  1LOH A;  3X3X A;  1NSS A;  1PS3 A;  4OJZ A;  2WVY A;  3QDE A;  3VD5 A;  4RNL A;  1NSM A;  3PGB A;  3DCD A;  2WW0 A;  1QAL A;  3CZJ A;  4FNS A;  1MMZ A;  1D6U A;  1V7V A;  3DEC A;  4K35 A;  1PX3 A;  2CFD A;  1IVX A;  4MMH A;  2F7O A;  2WYI A;  3ALA A;  3WVF A;  1NS0 A;  1HN0 A;  1AVL A;  3S4A A;  1K1Y A;  1W3Y A;  2XN2 A;  1HXK A;  2WW2 A;  2C11 A;  2F7P A;  2CG0 A;  3DX2 A;  3T2O A;  1IQY A;  4DUW A;  2CG1 A;  2BT3 A;  3SEP A;  2BRP A;  3MWX A;  2F7R A;  3T2P A;  2C10 A;  3ECQ A;  1AVK A;  1PX4 A;  2ZXQ A;  4BZE A;  3QFY A;  3WIR A;  1SO0 A;  5JMD A;  2WW3 A;  3MUY 1;  4UFC A;  3AFJ A;  1R34 A;  2EAB A;  1OJN A;  2JKE A;  1J0M A;  3MI6 A;  4BZF A;  3EJR A;  1F4H A;  2OW6 A;  2CFL A;  3EJT A;  4FNQ A;  1K1W A;  4FNV A;  1N7R A;  3W7T A;  2XN1 A;  1HMU A;  2E2V A;  2WO0 A;  1OJM A;  1K1X A;  1KSI A;  1UI8 A;  1LXM A;  1DYU A;  3E1F 1;  3OS7 A;  2CQS A;  2YX9 A;  1RWA A;  1QWU A;  3S4C A;  1EKM A;  1HMW A;  3CZS A;  1RKY A;  3EJU A;  3I3D A;  4KTP A;  5E1Q A;  1D6Y A;  1RJO A;  1JZ2 A;  3EJQ A;  2F1A A;  3T0D A;  2OW7 A;  2XHN A;  1PU4 A;  1X1I A;  2XSG A;  1OJO A;  2E24 A;  4KFD A;  3RRS A;  3N9H A;  1O7D D;  3CZN A;  3WIQ A;  3BLB A;  3EJP A;  1MMX A;  1QWN A;  3HIG A;  1F4A A;  3HI7 A;  1SIH A;  1C82 A;  1JYX A;  2CQT A;  2PNC A;  1QAK A;  3OBA A;  3VDB A;  4AQ0 A;  1JZ6 A;  1NSU A;  3AMO A;  3CV5 A;  3T0A A;  2CFG A;  1J0N A;  1OAC A;  2WVX A;  4EV5 A;  4BZH A;  4FNP A;  3BUQ A;  1RWH A;  1V7X A;  1SPU A;  3X42 A;  2F1B A;  5GW7 A;  3SX1 A;  3W7W A;  3TY1 A;  1HTY A;  3QG0 A;  1N7Q A;  1JZ8 A;  1CB8 A;  4DUX A;  1N9E A;  3KN4 A;  1TQV A;  3A0O A;  3MPH A;  3K25 A;  1L7K A;  1UG9 A;  1I8Q A;  1RWC A;  2OOV C;  1IU7 A;  1ULV A;  2WZS A;  3E7J A;  2OQE C;  3X40 A;  1WMO A;  3EJS A;  3VD4 A;  3DX4 A;  4FNU A;  3NJX A;  3W7X A;  3OB8 A;  3RSY A;  1LF9 A;  1NSZ A;  1NS4 A;  1X1H A;  3DX1 A;  3MUZ 1;  3WA3 A;  1QAF A;  3X3Y A;  1LVN A;  1HM2 A;  1YQ2 A;  2CWT A;  2CIQ A;  3BLC A;  3BUI A;  1JYN A;  2YFO A;  1TU5 A;  2RDY A;  3S4D A;  2CWV A;  3SXX A;  1LUR A;  3D4Y A;  1TQU A;  2Q1F A;  2WVZ A;  3BVX A;  1F1S A; 
#chains in the Genus database with same CATH homology
 2FUQ A;  3IAP A;  3DYM A;  3NRE A;  4DUV A;  1LXK A;  1NS0 A;  1HN0 A;  2JKA A;  3VDC A;  3VD9 A;  1MMX A;  3T09 A;  4OK2 A;  1K1Y A;  1W3Y A;  1F4A A;  1C82 A;  1X1J A;  2CIR A;  3IMH A;  1JYX A;  2HTA A;  3OBA A;  3J7H A;  3VDB A;  4AQ0 A;  3MV1 1;  2WW2 A;  2WDA A;  2JKP A;  1SNZ A;  1N7N A;  3DYO A;  1JZ4 A;  3T0B A;  1JZ6 A;  1LF6 A;  2X03 A;  3VDA A;  3I3E A;  1NSU A;  3A24 A;  3T2O A;  4DUW A;  3T0A A;  1J0N A;  1N7O A;  1Z45 A;  2WVX A;  4BZH A;  1JZ5 A;  3AFL A;  1JZ3 A;  3SEP A;  1RWH A;  2BRP A;  1DP0 A;  2FUT A;  3MWX A;  1NS2 A;  1RWF A;  3T2P A;  1L7J A;  1MMU A;  3ECQ A;  3WFA A;  1F9G A;  1JZ7 A;  2BRW A;  3TY1 A;  1PX4 A;  2ZXQ A;  4BZE A;  5JMD A;  1SO0 A;  1RW9 A;  2WW3 A;  3NJV A;  1N7Q A;  1TXK A;  3I3B A;  3MUY 1;  1MMY A;  1YGA A;  1JZ8 A;  3DYP A;  1OJP A;  1OJN A;  4TTG A;  1NS7 A;  1NSX A;  1NKG A;  2JKE A;  1J0M A;  2E22 A;  3T2Q A;  4BZF A;  3BS6 A;  3WVF A;  1F4H A;  1CB8 A;  1K1W A;  4FNV A;  3VD7 A;  4DUX A;  1N7R A;  1NS8 A;  4J5T A;  1HMU A;  3A0O A;  5A1A A;  3K25 A;  2D73 A;  1OJM A;  1K1X A;  2HTB A;  2WCO A;  2ZQ0 A;  1LXM A;  2CIS A;  1L7K A;  3E80 A;  1N7P A;  1UG9 A;  1I8Q A;  3E1F 1;  4NEI A;  3BGA A;  1RWC A;  3MV0 1;  1ULV A;  1RWG A;  2WZS A;  3E7J A;  3OS7 A;  3T08 A;  1JOV A;  4MMI A;  2WW1 A;  3IAQ A;  1RWA A;  3VSN A;  3Q1N A;  1LOH A;  2BRV X;  3VD4 A;  1HMW A;  1NSS A;  1NSV A;  3NJX A;  3I3D A;  5E1Q A;  4OJZ A;  1HN1 A;  1JZ2 A;  2WVY A;  3OB8 A;  3VD5 A;  1LF9 A;  1NSR A;  1NSZ A;  4RNL A;  2WVX B;  1NS4 A;  1X1H A;  3MUZ 1;  1NSM A;  3T0D A;  3DCD A;  2WW0 A;  3CZJ A;  1HM2 A;  2XHN A;  1YQ2 A;  1X1I A;  1JYW A;  1MMZ A;  2XSG A;  2CIQ A;  1JYV A;  4OK4 A;  1MN0 A;  1OJO A;  3DEC A;  3BLC A;  2E24 A;  3VSM A;  1JYN A;  1HM3 A;  3VD3 A;  1PX3 A;  1LUR A;  4MMH A;  2Q1F A;  1EGU A;  2WVZ A;  4BZG A;  1F1S A;  5JMF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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