3WVFA

Crystal structure of yidc from escherichia coli
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
473
structure length
448
Chain Sequence
GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Membrane protein insertase YidC
publication title Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Chaperone
total genus 115
structure length 448
sequence length 473
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02096 60KD_IMP 60Kd inner membrane protein
A PF14849 YidC_periplas YidC periplasmic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.90 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3wvfA01
3WVFA 3BS6A 3BLCA
chains in the Genus database with same CATH superfamily
2FUTA 4KTPA 3VDAA 3NBBA 1QWUA 3Q1NA 2JKEA 3KN4A 1AV4A 1J0NA 2Q1FA 2ALWA 2BT3A 4MMIA 3X41A 3DYOA 1OJPA 4FNQA 2EADA 1TQSA 1R33A 1IU7A 2WCOA 1JYVA 2X03A 1W5ZA 1MMUA 1SO0A 2BRVX 4BZFA 3VDBA 3A0OA 2CG1A 3VD7A 2XN1A 1NSXA 1L7KA 2WZSA 1NS4A 1D6YA 2CQSA 3WFAA 2WW3A 1F4AA 4DUWA 1WMPA 2WOFA 1LF6A 3LOYA 3DCDA 1V7WA 2RDYA 2D73A 3VSMA 3MUY1 1HN1A 1NSMA 1V7XA 1X1HA 3MWXA 2ZL8A 1HM3A 3D4YA 2XSGA 2YFNA 2BRPA 4FNUA 3ACTA 2F7RA 1UI8A 3IMHA 2XN2A 1HMUA 3J7HA 3BUIA 2WW2A 2CWUA 4EV2A 1MMYA 3TY1A 3VSNA 3DX4A 3W7TA 2CISA 3A24A 4BTXA 1JZ7A 3I3EA 3BS6A 3HIIA 1JYNA 3BVWA 4BZGA 1LOHA 3NREA 4KFDA 4KFEA 1RWFA 1LXKA 1RWGA 3OB8A 2OW6A 4OK2A 3VD4A 1EKMA 2CIQA 1LVNA 3LVTA 3T09A 3NJVA 1JZ6A 3D50A 3CZSA 1EGUA 1JZ3A 3D3IA 3N9HA 2E24A 3ACSA 3BGAA 1RJOA 3DDFA 3EJSA 1DYUA 1HXKA 1J0MA 1HWWA 2WVZA 1TQTA 1W3YA 3VD3A 1MMZA 1QWNA 1JZ8A 1DP0A 1MMXA 3IAQA 1QAFA 1UG9A 4J5TA 2CFKA 1N7RA 2CWVA 4TTGA 4BZHA 3CV5A 1UI7A 1OJNA 3NJXA 1NKGA 5CA3A 3HIGA 3DDGA 5JMDA 2CFLA 3BUDA 5E1QA 1OJOA 1CB8A 3SX1A 3X3ZA 4FNPA 2FYVA 1JYXA 3WA2X 3MI6A 1NSRA 4UFCA 2BRWA 2WOHA 3DX3A 2CFWA 3D4ZA 1X1JA 3W7UA 3S4AA 2W0QA 1RWHA 1W4NA 1PX3A 5A1AA 3T2QA 3CZJA 2F7OA 3EJQA 1D6ZA 1YQ2A 1K1XA 2WVXA 3WIRA 1TQUA 1WMNA 2F7QA 2E2VA 3BVVA 1NSVA 4OJZA 4K3AA 4FNSA 1OACA 1RWAA 1PS3A 4MMHA 3BUPA 2WGQA 3W7WA 3AMOA 2E2TA 4KTRA 3QFZA 2PNCA 1TXKA 3EJRA 2E22A 1N7OA 1WMOA 2EAEA 1HN0A 1F9GA 1H54A 4RNLA 1QAKA 3MUZ1 2WYHA 4KFFA 3IAPA 1TQVA 5JMFA 3DX2A 3QG0A 3W7XA 4BZEA 3SEPA 4FNTA 1JZ2A 1W2ZA 3DYMA 1LXMA 3VD9A 1IVVA 1QALA 2OW7A 1IQYA 1AVKA 1F1SA 1K1WA 4K35A 1NS8A 1N7NA 1IQXA 1V7VA 3BUQA 1RWCA 2C11A 3AFLA 1KSIA 3BVUA 1HM2A 1HTYA 1MN0A 3K25A 4FNVA 3DX1A 2Y74A 2XHNA 1JYWA 2F1AA 3BVXA 3T0DA 2ZQ0A 2WO0A 3MV01 1TQWA 2WW1A 1AVLA 1PX4A 3E80A 1YGAA 2CFDA 1W6CA 5GW7A 1NS0A 3W7SA 1R34A 3BVTA 4OK4A 3RSYA 3CZNA 3X3XA 3PGBA 4DUXA 2JKPA 3BLCA 3RRSA 1TU5A 1RW9A 3X42A 3WIQA 1NSSA 1W7CA 2FUQA 1N9EA 2OQEC 1JOVA 1IVUA 2JKAA 3X40A 3T2OA 3E1F1 3S4DA 1NS2A 1L7JA 3T2PA 4EV5A 1PU4A 3DX0A 1JZ5A 3VDCA 1SIHA 3QDEA 3S4BA 2WVXB 2WW0A 3NBJA 3OS7A 2HTAA 1Z45A 3DYPA 1SPUA 4AQ0A 3ALAA 2OOVC 2CG0A 3HI7A 1A2VA 3T0BA 3T0AA 2YX9A 4BTYA 1US1A 1X1IA 3SXXA 2C10A 3KIIA 4BTWA 4FNRA 1K1YA 2CQTA 1NSZA 3I3DA 2ZXQA 2WVYA 3OBAA 3WVFA 2WYIA 3BUBA 1HMWA 3T08A 3T0UA 3AMOB 1NS7A 3EJPA 2D1WA 3K5TA 1C82A 1SIIA 3ECQA 2CIRA 1O7DD 1SNZA 1D6UA 5KBPA 2CFGA 2F18A 3X3YA 4DUVA 3DECA 2EABA 3I3BA 3QFYA 2OQEA 1IVXA 3EJTA 3MV11 1F4HA 3VD5A 3D52A 3AFJA 2XN0A 3D51A 2F1BA 3S4CA 1JRQA 1W6GA 2YFOA 1N7PA 1ULVA 2Y73A 1QX1A 1I8QA 2WDAA 2EACA 2OOVA 1N7QA 2E2UA 1OJMA 3WA3A 3EJUA 1JZ4A 1LF9A 2F7PA 2CWTA 1LURA 1RKYA 1IVWA 1NSUA 4NEIA 3BLBA 2HTBA 3E7JA 3MPHA
chains in the Genus database with same CATH topology
4OK2A 3VD4A 2FUTA 2CIQA 3VDAA 1JOVA 2JKAA 3Q1NA 2JKEA 3T2OA 3T09A 3E1F1 3NJVA 1NS2A 1L7JA 3T2PA 1JZ6A 1J0NA 2Q1FA 1JZ5A 3VDCA 1EGUA 1JZ3A 4MMIA 1TXKA 2E24A 2WVXB 3DYOA 2WW0A 1OJPA 3BGAA 2E22A 3OS7A 1J0MA 2HTAA 1HN0A 1Z45A 1F9GA 3DYPA 4RNLA 2WVZA 1W3YA 2WCOA 3VD3A 4AQ0A 1JYVA 1MMZA 2X03A 1MMUA 3T0BA 3T0AA 1JZ8A 3MUZ1 1SO0A 1DP0A 1MMXA 1X1IA 2BRVX 4BZFA 3VDBA 3IAPA 3IAQA 5JMFA 1UG9A 4J5TA 1N7RA 3A0OA 4TTGA 4BZEA 4BZHA 3VD7A 3SEPA 1K1YA 1JZ2A 1NSZA 3I3DA 2ZXQA 3DYMA 1NSXA 1LXMA 2WVYA 3OBAA 3VD9A 3WVFA 1OJNA 3NJXA 1HMWA 3T08A 1NKGA 1NS7A 5JMDA 1L7KA 2WZSA 1NS4A 3WFAA 2WW3A 1F1SA 1F4AA 4DUWA 5E1QA 1K1WA 1OJOA 1LF6A 1CB8A 3DCDA 1C82A 2D73A 1JYXA 1NS8A 3VSMA 3ECQA 1NSRA 1HN1A 1N7NA 1NSMA 1SNZA 2CIRA 3E7JA 2BRWA 3MUY1 1RWCA 3AFLA 4DUVA 3DECA 3I3BA 1X1JA 1HM2A 1MN0A 3K25A 1X1HA 4FNVA 3MWXA 1RWHA 1HM3A 2XHNA 1JYWA 1PX3A 2XSGA 3MV11 2BRPA 5A1AA 3T2QA 3T0DA 2ZQ0A 3IMHA 1F4HA 1HMUA 3VD5A 3CZJA 3MV01 2WW1A 1PX4A 1YGAA 3E80A 3J7HA 1N7PA 2WW2A 1YQ2A 1NS0A 1K1XA 1ULVA 1MMYA 3TY1A 3VSNA 2CISA 3A24A 2WVXA 1I8QA 1JZ7A 2WDAA 3I3EA 4OK4A 1N7QA 1OJMA 3BS6A 1JZ4A 1NSVA 4OJZA 1LF9A 1JYNA 4DUXA 1LURA 4BZGA 1LOHA 3NREA 1NSUA 2JKPA 4NEIA 3BLCA 1RWAA 1RW9A 2HTBA 1RWFA 1LXKA 1RWGA 1N7OA 3OB8A 1NSSA 4MMHA 2FUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVF A;  3BS6 A;  3BLC A; 
#chains in the Genus database with same CATH topology
 2FUT A;  4KTP A;  3VDA A;  3NBB A;  1QWU A;  3Q1N A;  2JKE A;  3KN4 A;  1AV4 A;  1J0N A;  2Q1F A;  2ALW A;  2BT3 A;  4MMI A;  3X41 A;  3DYO A;  1OJP A;  4FNQ A;  2EAD A;  1TQS A;  1R33 A;  1IU7 A;  2WCO A;  1JYV A;  2X03 A;  1W5Z A;  1MMU A;  1SO0 A;  2BRV X;  4BZF A;  3VDB A;  3A0O A;  2CG1 A;  3VD7 A;  2XN1 A;  1NSX A;  1L7K A;  2WZS A;  1NS4 A;  1D6Y A;  2CQS A;  3WFA A;  2WW3 A;  1F4A A;  4DUW A;  1WMP A;  2WOF A;  1LF6 A;  3LOY A;  3DCD A;  1V7W A;  2RDY A;  2D73 A;  3VSM A;  3MUY 1;  1HN1 A;  1NSM A;  1V7X A;  1X1H A;  3MWX A;  2ZL8 A;  1HM3 A;  3D4Y A;  2XSG A;  2YFN A;  2BRP A;  4FNU A;  3ACT A;  2F7R A;  1UI8 A;  3IMH A;  2XN2 A;  1HMU A;  3J7H A;  3BUI A;  2WW2 A;  2CWU A;  4EV2 A;  1MMY A;  3TY1 A;  3VSN A;  3DX4 A;  3W7T A;  2CIS A;  3A24 A;  4BTX A;  1JZ7 A;  3I3E A;  3BS6 A;  3HII A;  1JYN A;  3BVW A;  4BZG A;  1LOH A;  3NRE A;  4KFD A;  4KFE A;  1RWF A;  1LXK A;  1RWG A;  3OB8 A;  2OW6 A;  4OK2 A;  3VD4 A;  1EKM A;  2CIQ A;  1LVN A;  3LVT A;  3T09 A;  3NJV A;  1JZ6 A;  3D50 A;  3CZS A;  1EGU A;  1JZ3 A;  3D3I A;  3N9H A;  2E24 A;  3ACS A;  3BGA A;  1RJO A;  3DDF A;  3EJS A;  1DYU A;  1HXK A;  1J0M A;  1HWW A;  2WVZ A;  1TQT A;  1W3Y A;  3VD3 A;  1MMZ A;  1QWN A;  1JZ8 A;  1DP0 A;  1MMX A;  3IAQ A;  1QAF A;  1UG9 A;  4J5T A;  2CFK A;  1N7R A;  2CWV A;  4TTG A;  4BZH A;  3CV5 A;  1UI7 A;  1OJN A;  3NJX A;  1NKG A;  5CA3 A;  3HIG A;  3DDG A;  5JMD A;  2CFL A;  3BUD A;  5E1Q A;  1OJO A;  1CB8 A;  3SX1 A;  3X3Z A;  4FNP A;  2FYV A;  1JYX A;  3WA2 X;  3MI6 A;  1NSR A;  4UFC A;  2BRW A;  2WOH A;  3DX3 A;  2CFW A;  3D4Z A;  1X1J A;  3W7U A;  3S4A A;  2W0Q A;  1RWH A;  1W4N A;  1PX3 A;  5A1A A;  3T2Q A;  3CZJ A;  2F7O A;  3EJQ A;  1D6Z A;  1YQ2 A;  1K1X A;  2WVX A;  3WIR A;  1TQU A;  1WMN A;  2F7Q A;  2E2V A;  3BVV A;  1NSV A;  4OJZ A;  4K3A A;  4FNS A;  1OAC A;  1RWA A;  1PS3 A;  4MMH A;  3BUP A;  2WGQ A;  3W7W A;  3AMO A;  2E2T A;  4KTR A;  3QFZ A;  2PNC A;  1TXK A;  3EJR A;  2E22 A;  1N7O A;  1WMO A;  2EAE A;  1HN0 A;  1F9G A;  1H54 A;  4RNL A;  1QAK A;  3MUZ 1;  2WYH A;  4KFF A;  3IAP A;  1TQV A;  5JMF A;  3DX2 A;  3QG0 A;  3W7X A;  4BZE A;  3SEP A;  4FNT A;  1JZ2 A;  1W2Z A;  3DYM A;  1LXM A;  3VD9 A;  1IVV A;  1QAL A;  2OW7 A;  1IQY A;  1AVK A;  1F1S A;  1K1W A;  4K35 A;  1NS8 A;  1N7N A;  1IQX A;  1V7V A;  3BUQ A;  1RWC A;  2C11 A;  3AFL A;  1KSI A;  3BVU A;  1HM2 A;  1HTY A;  1MN0 A;  3K25 A;  4FNV A;  3DX1 A;  2Y74 A;  2XHN A;  1JYW A;  2F1A A;  3BVX A;  3T0D A;  2ZQ0 A;  2WO0 A;  3MV0 1;  1TQW A;  2WW1 A;  1AVL A;  1PX4 A;  3E80 A;  1YGA A;  2CFD A;  1W6C A;  5GW7 A;  1NS0 A;  3W7S A;  1R34 A;  3BVT A;  4OK4 A;  3RSY A;  3CZN A;  3X3X A;  3PGB A;  4DUX A;  2JKP A;  3BLC A;  3RRS A;  1TU5 A;  1RW9 A;  3X42 A;  3WIQ A;  1NSS A;  1W7C A;  2FUQ A;  1N9E A;  2OQE C;  1JOV A;  1IVU A;  2JKA A;  3X40 A;  3T2O A;  3E1F 1;  3S4D A;  1NS2 A;  1L7J A;  3T2P A;  4EV5 A;  1PU4 A;  3DX0 A;  1JZ5 A;  3VDC A;  1SIH A;  3QDE A;  3S4B A;  2WVX B;  2WW0 A;  3NBJ A;  3OS7 A;  2HTA A;  1Z45 A;  3DYP A;  1SPU A;  4AQ0 A;  3ALA A;  2OOV C;  2CG0 A;  3HI7 A;  1A2V A;  3T0B A;  3T0A A;  2YX9 A;  4BTY A;  1US1 A;  1X1I A;  3SXX A;  2C10 A;  3KII A;  4BTW A;  4FNR A;  1K1Y A;  2CQT A;  1NSZ A;  3I3D A;  2ZXQ A;  2WVY A;  3OBA A;  3WVF A;  2WYI A;  3BUB A;  1HMW A;  3T08 A;  3T0U A;  3AMO B;  1NS7 A;  3EJP A;  2D1W A;  3K5T A;  1C82 A;  1SII A;  3ECQ A;  2CIR A;  1O7D D;  1SNZ A;  1D6U A;  5KBP A;  2CFG A;  2F18 A;  3X3Y A;  4DUV A;  3DEC A;  2EAB A;  3I3B A;  3QFY A;  2OQE A;  1IVX A;  3EJT A;  3MV1 1;  1F4H A;  3VD5 A;  3D52 A;  3AFJ A;  2XN0 A;  3D51 A;  2F1B A;  3S4C A;  1JRQ A;  1W6G A;  2YFO A;  1N7P A;  1ULV A;  2Y73 A;  1QX1 A;  1I8Q A;  2WDA A;  2EAC A;  2OOV A;  1N7Q A;  2E2U A;  1OJM A;  3WA3 A;  3EJU A;  1JZ4 A;  1LF9 A;  2F7P A;  2CWT A;  1LUR A;  1RKY A;  1IVW A;  1NSU A;  4NEI A;  3BLB A;  2HTB A;  3E7J A;  3MPH A; 
#chains in the Genus database with same CATH homology
 4OK2 A;  3VD4 A;  2FUT A;  2CIQ A;  3VDA A;  1JOV A;  2JKA A;  3Q1N A;  2JKE A;  3T2O A;  3T09 A;  3E1F 1;  3NJV A;  1NS2 A;  1L7J A;  3T2P A;  1JZ6 A;  1J0N A;  2Q1F A;  1JZ5 A;  3VDC A;  1EGU A;  1JZ3 A;  4MMI A;  1TXK A;  2E24 A;  2WVX B;  3DYO A;  2WW0 A;  1OJP A;  3BGA A;  2E22 A;  3OS7 A;  1J0M A;  2HTA A;  1HN0 A;  1Z45 A;  1F9G A;  3DYP A;  4RNL A;  2WVZ A;  1W3Y A;  2WCO A;  3VD3 A;  4AQ0 A;  1JYV A;  1MMZ A;  2X03 A;  1MMU A;  3T0B A;  3T0A A;  1JZ8 A;  3MUZ 1;  1SO0 A;  1DP0 A;  1MMX A;  1X1I A;  2BRV X;  4BZF A;  3VDB A;  3IAP A;  3IAQ A;  5JMF A;  1UG9 A;  4J5T A;  1N7R A;  3A0O A;  4TTG A;  4BZE A;  4BZH A;  3VD7 A;  3SEP A;  1K1Y A;  1JZ2 A;  1NSZ A;  3I3D A;  2ZXQ A;  3DYM A;  1NSX A;  1LXM A;  2WVY A;  3OBA A;  3VD9 A;  3WVF A;  1OJN A;  3NJX A;  1HMW A;  3T08 A;  1NKG A;  1NS7 A;  5JMD A;  1L7K A;  2WZS A;  1NS4 A;  3WFA A;  2WW3 A;  1F1S A;  1F4A A;  4DUW A;  5E1Q A;  1K1W A;  1OJO A;  1LF6 A;  1CB8 A;  3DCD A;  1C82 A;  2D73 A;  1JYX A;  1NS8 A;  3VSM A;  3ECQ A;  1NSR A;  1HN1 A;  1N7N A;  1NSM A;  1SNZ A;  2CIR A;  3E7J A;  2BRW A;  3MUY 1;  1RWC A;  3AFL A;  4DUV A;  3DEC A;  3I3B A;  1X1J A;  1HM2 A;  1MN0 A;  3K25 A;  1X1H A;  4FNV A;  3MWX A;  1RWH A;  1HM3 A;  2XHN A;  1JYW A;  1PX3 A;  2XSG A;  3MV1 1;  2BRP A;  5A1A A;  3T2Q A;  3T0D A;  2ZQ0 A;  3IMH A;  1F4H A;  1HMU A;  3VD5 A;  3CZJ A;  3MV0 1;  2WW1 A;  1PX4 A;  1YGA A;  3E80 A;  3J7H A;  1N7P A;  2WW2 A;  1YQ2 A;  1NS0 A;  1K1X A;  1ULV A;  1MMY A;  3TY1 A;  3VSN A;  2CIS A;  3A24 A;  2WVX A;  1I8Q A;  1JZ7 A;  2WDA A;  3I3E A;  4OK4 A;  1N7Q A;  1OJM A;  3BS6 A;  1JZ4 A;  1NSV A;  4OJZ A;  1LF9 A;  1JYN A;  4DUX A;  1LUR A;  4BZG A;  1LOH A;  3NRE A;  1NSU A;  2JKP A;  4NEI A;  3BLC A;  1RWA A;  1RW9 A;  2HTB A;  1RWF A;  1LXK A;  1RWG A;  1N7O A;  3OB8 A;  1NSS A;  4MMH A;  2FUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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