3WVFA

Crystal structure of yidc from escherichia coli
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
473
structure length
448
Chain Sequence
GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Membrane protein insertase YidC
publication title Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Chaperone
total genus 115
structure length 448
sequence length 473
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02096 60KD_IMP 60Kd inner membrane protein
A PF14849 YidC_periplas YidC periplasmic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.90 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3wvfA01
3WVFA 3BLCA 3BS6A
chains in the Genus database with same CATH superfamily
3W7WA 3KN4A 3W7TA 3ACTA 2CFKA 1OJOA 2FYVA 3BVVA 1W5ZA 1OACA 2D73A 2BRPA 2E22A 3AFJA 1QALA 1LF6A 2JKAA 3DYPA 1R34A 2YFOA 3EJQA 1LVNA 1O7DD 1JZ7A 1YGAA 2JKPA 3VDAA 2CFLA 3VSMA 4BZGA 2WOFA 3MWXA 2Q1FA 3S4AA 1H54A 1JYVA 2CWTA 2XN1A 3ALAA 3BS6A 1NKGA 3D51A 2Y74A 1C82A 3ACSA 1NSRA 3J7HA 1IQYA 4EV5A 3W7XA 4BTYA 3X3XA 1LXMA 1NSZA 1F9GA 2CFGA 1X1IA 3MPHA 1I8QA 1RKYA 1NSUA 2FUTA 1QWUA 5JMFA 1J0MA 1V7XA 3BGAA 2C10A 1X1JA 2ZL8A 3EJPA 4FNTA 1JZ8A 1N7RA 3DDGA 3VD4A 1MMYA 4DUWA 1W4NA 4FNPA 1DP0A 1JYXA 2F7RA 1QX1A 1TQWA 2CIQA 1CB8A 1N9EA 3IAPA 1K1XA 3X40A 2WYIA 4KFDA 3EJTA 1QWNA 2WYHA 1JZ3A 3D50A 1TU5A 3WIRA 3BVWA 3ECQA 3X3YA 1N7OA 1UI8A 4TTGA 3AMOA 3D4ZA 2XSGA 3RSYA 3VD3A 3NJVA 3AMOB 3VDCA 3DDFA 3VSNA 3BUIA 3E80A 1WMPA 1NSXA 1V7VA 2WVZA 5A1AA 4FNUA 2WCOA 4KFFA 1X1HA 3W7SA 1W6CA 4OK4A 3T08A 1AVLA 3VD5A 1K1WA 3DX2A 3DCDA 1IVVA 1W3YA 1IU7A 3EJRA 2YX9A 3WIQA 1JYWA 3WVFA 2F1AA 3EJUA 3QDEA 4FNRA 1AVKA 1L7KA 2WOHA 3BLCA 3X42A 1KSIA 1D6ZA 1N7NA 1F1SA 3DX4A 4BZHA 1OJPA 2E2UA 1OJNA 1D6UA 3N9HA 3MUZ1 2Y73A 3TY1A 2WO0A 3K5TA 1NS2A 2E2TA 1IVXA 4KTRA 1YQ2A 2W0QA 2XN0A 3BUQA 3CV5A 2CWUA 4EV2A 1HM3A 2EAEA 3D4YA 3MV01 3X3ZA 4FNQA 1SO0A 3X41A 4AQ0A 2WVXB 1SIHA 2FUQA 3W7UA 4K35A 3E1F1 3T0AA 1WMNA 3A0OA 4FNVA 4OK2A 1MMUA 3HI7A 3T2QA 1A2VA 3T2OA 3WA3A 1PX4A 1SIIA 3K25A 2XN2A 1MN0A 2WW2A 3IAQA 2C11A 1IVUA 1W2ZA 3I3DA 4RNLA 2HTBA 1HM2A 1TQTA 1L7JA 4KTPA 3LOYA 1F4AA 3DYMA 4MMHA 2YFNA 4NEIA 3T2PA 5KBPA 4K3AA 3AFLA 2WW0A 3T0UA 1RWGA 2CFWA 2XHNA 3VD9A 1TQUA 3S4CA 2F18A 1JYNA 3T09A 1LXKA 1HMUA 1WMOA 1UG9A 3T0DA 1PS3A 1NSMA 1N7PA 2WDAA 1OJMA 4BZEA 2X03A 2CQSA 2EABA 1TXKA 1Z45A 4KFEA 3DX3A 1US1A 4BTXA 2F1BA 4DUXA 3E7JA 1PX3A 1RWFA 1HWWA 1HXKA 3I3BA 2CFDA 2WW1A 3NBBA 1JOVA 1HN1A 3MV11 2CIRA 3DX1A 3BUDA 2E2VA 2OOVC 1RWHA 3BVTA 3BUBA 1AV4A 2OQEC 3QFZA 3HIIA 3A24A 1NS0A 2RDYA 3CZNA 3EJSA 4MMIA 1NSVA 5JMDA 3NJXA 2OW6A 3S4DA 3WA2X 1JZ5A 3OS7A 4UFCA 3CZSA 1LURA 1RWAA 1NSSA 1DYUA 3QG0A 1HTYA 2WVYA 4FNSA 2JKEA 4DUVA 3RRSA 2WVXA 1ULVA 2HTAA 1TQVA 3BUPA 4BZFA 3OBAA 2F7PA 1V7WA 2OOVA 2E24A 2CWVA 1K1YA 1QAKA 5GW7A 2OQEA 3BLBA 1NS8A 3DYOA 3LVTA 3WFAA 2F7OA 3IMHA 1LF9A 2EACA 2ALWA 3VDBA 1EKMA 2F7QA 1RJOA 3NBJA 1TQSA 2WGQA 2ZXQA 3VD7A 2ZQ0A 3HIGA 1QAFA 2OW7A 3Q1NA 3MUY1 1LOHA 3NREA 2EADA 1N7QA 1RW9A 3BVUA 4OJZA 3QFYA 1W6GA 1IQXA 2BT3A 3BVXA 3CZJA 1JZ6A 2CQTA 3I3EA 3MI6A 1HN0A 1JZ2A 1MMXA 3T0BA 2CISA 1F4HA 3DECA 1IVWA 1HMWA 3D3IA 1J0NA 4BTWA 3D52A 5E1QA 4J5TA 1NS4A 2WW3A 1MMZA 2CG1A 1EGUA 3KIIA 1RWCA 1R33A 1JRQA 1D6YA 1NS7A 1SNZA 2D1WA 3SX1A 2BRWA 2WZSA 3OB8A 1UI7A 3SEPA 2PNCA 3S4BA 2CG0A 5CA3A 1PU4A 3SXXA 2BRVX 3DX0A 1SPUA 3PGBA 1JZ4A 1W7CA
chains in the Genus database with same CATH topology
1RWAA 3A0OA 1NSSA 4FNVA 2XSGA 4OK2A 1MMUA 3VD3A 3T2QA 2WVYA 3NJVA 3T2OA 3VDCA 1PX4A 1OJOA 3VSNA 3K25A 2JKEA 2D73A 2E22A 2BRPA 3E80A 1MN0A 4DUVA 2WVXA 2WW2A 1LF6A 1NSXA 3IAQA 2JKAA 1ULVA 2HTAA 3DYPA 4BZFA 2WVZA 5A1AA 3OBAA 3I3DA 1JZ7A 2E24A 1YGAA 2HTBA 1K1YA 1HM2A 2JKPA 2WCOA 4RNLA 1X1HA 1L7JA 3VDAA 3VSMA 1F4AA 4BZGA 4OK4A 3DYMA 4MMHA 3T08A 1NS8A 3MWXA 3DYOA 4NEIA 3VD5A 3WFAA 3T2PA 1K1WA 2Q1FA 3DCDA 1JYVA 3IMHA 1LF9A 3AFLA 2WW0A 1W3YA 3BS6A 3VDBA 1NKGA 1RWGA 2XHNA 2ZXQA 3VD9A 1JYNA 3VD7A 3T09A 1C82A 2ZQ0A 1NSRA 3J7HA 3WVFA 1JYWA 1LXKA 1HMUA 1UG9A 3Q1NA 3MUY1 1LOHA 1L7KA 3BLCA 3NREA 3T0DA 1NSMA 1LXMA 1NSZA 1N7PA 1F9GA 1N7QA 2WDAA 1X1IA 1OJMA 1RW9A 1N7NA 1I8QA 4BZEA 2X03A 1NSUA 2FUTA 1F1SA 1TXKA 4BZHA 4OJZA 1Z45A 5JMFA 1J0MA 1OJPA 1OJNA 3BGAA 4DUXA 3MUZ1 3E7JA 3TY1A 1X1JA 1JZ8A 3VD4A 3CZJA 1N7RA 1JZ6A 3I3EA 1HN0A 1MMYA 1MMXA 1JZ2A 1PX3A 4DUWA 1RWFA 1NS2A 2CISA 1F4HA 3DECA 3T0BA 1HMWA 1YQ2A 1J0NA 1DP0A 3I3BA 5E1QA 1JYXA 4J5TA 2WW1A 1JOVA 1HN1A 1NS4A 2WW3A 3MV11 2CIRA 1MMZA 1EGUA 2CIQA 1CB8A 1RWCA 1HM3A 1RWHA 1NS7A 1SNZA 3IAPA 1K1XA 3MV01 2BRWA 2WZSA 3OB8A 3A24A 1NS0A 3SEPA 1SO0A 4MMIA 1JZ3A 1NSVA 4AQ0A 5JMDA 2BRVX 2WVXB 3NJXA 3ECQA 1N7OA 2FUQA 1JZ5A 3OS7A 1JZ4A 3E1F1 4TTGA 3T0AA 1LURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVF A;  3BLC A;  3BS6 A; 
#chains in the Genus database with same CATH topology
 3W7W A;  3KN4 A;  3W7T A;  3ACT A;  2CFK A;  1OJO A;  2FYV A;  3BVV A;  1W5Z A;  1OAC A;  2D73 A;  2BRP A;  2E22 A;  3AFJ A;  1QAL A;  1LF6 A;  2JKA A;  3DYP A;  1R34 A;  2YFO A;  3EJQ A;  1LVN A;  1O7D D;  1JZ7 A;  1YGA A;  2JKP A;  3VDA A;  2CFL A;  3VSM A;  4BZG A;  2WOF A;  3MWX A;  2Q1F A;  3S4A A;  1H54 A;  1JYV A;  2CWT A;  2XN1 A;  3ALA A;  3BS6 A;  1NKG A;  3D51 A;  2Y74 A;  1C82 A;  3ACS A;  1NSR A;  3J7H A;  1IQY A;  4EV5 A;  3W7X A;  4BTY A;  3X3X A;  1LXM A;  1NSZ A;  1F9G A;  2CFG A;  1X1I A;  3MPH A;  1I8Q A;  1RKY A;  1NSU A;  2FUT A;  1QWU A;  5JMF A;  1J0M A;  1V7X A;  3BGA A;  2C10 A;  1X1J A;  2ZL8 A;  3EJP A;  4FNT A;  1JZ8 A;  1N7R A;  3DDG A;  3VD4 A;  1MMY A;  4DUW A;  1W4N A;  4FNP A;  1DP0 A;  1JYX A;  2F7R A;  1QX1 A;  1TQW A;  2CIQ A;  1CB8 A;  1N9E A;  3IAP A;  1K1X A;  3X40 A;  2WYI A;  4KFD A;  3EJT A;  1QWN A;  2WYH A;  1JZ3 A;  3D50 A;  1TU5 A;  3WIR A;  3BVW A;  3ECQ A;  3X3Y A;  1N7O A;  1UI8 A;  4TTG A;  3AMO A;  3D4Z A;  2XSG A;  3RSY A;  3VD3 A;  3NJV A;  3AMO B;  3VDC A;  3DDF A;  3VSN A;  3BUI A;  3E80 A;  1WMP A;  1NSX A;  1V7V A;  2WVZ A;  5A1A A;  4FNU A;  2WCO A;  4KFF A;  1X1H A;  3W7S A;  1W6C A;  4OK4 A;  3T08 A;  1AVL A;  3VD5 A;  1K1W A;  3DX2 A;  3DCD A;  1IVV A;  1W3Y A;  1IU7 A;  3EJR A;  2YX9 A;  3WIQ A;  1JYW A;  3WVF A;  2F1A A;  3EJU A;  3QDE A;  4FNR A;  1AVK A;  1L7K A;  2WOH A;  3BLC A;  3X42 A;  1KSI A;  1D6Z A;  1N7N A;  1F1S A;  3DX4 A;  4BZH A;  1OJP A;  2E2U A;  1OJN A;  1D6U A;  3N9H A;  3MUZ 1;  2Y73 A;  3TY1 A;  2WO0 A;  3K5T A;  1NS2 A;  2E2T A;  1IVX A;  4KTR A;  1YQ2 A;  2W0Q A;  2XN0 A;  3BUQ A;  3CV5 A;  2CWU A;  4EV2 A;  1HM3 A;  2EAE A;  3D4Y A;  3MV0 1;  3X3Z A;  4FNQ A;  1SO0 A;  3X41 A;  4AQ0 A;  2WVX B;  1SIH A;  2FUQ A;  3W7U A;  4K35 A;  3E1F 1;  3T0A A;  1WMN A;  3A0O A;  4FNV A;  4OK2 A;  1MMU A;  3HI7 A;  3T2Q A;  1A2V A;  3T2O A;  3WA3 A;  1PX4 A;  1SII A;  3K25 A;  2XN2 A;  1MN0 A;  2WW2 A;  3IAQ A;  2C11 A;  1IVU A;  1W2Z A;  3I3D A;  4RNL A;  2HTB A;  1HM2 A;  1TQT A;  1L7J A;  4KTP A;  3LOY A;  1F4A A;  3DYM A;  4MMH A;  2YFN A;  4NEI A;  3T2P A;  5KBP A;  4K3A A;  3AFL A;  2WW0 A;  3T0U A;  1RWG A;  2CFW A;  2XHN A;  3VD9 A;  1TQU A;  3S4C A;  2F18 A;  1JYN A;  3T09 A;  1LXK A;  1HMU A;  1WMO A;  1UG9 A;  3T0D A;  1PS3 A;  1NSM A;  1N7P A;  2WDA A;  1OJM A;  4BZE A;  2X03 A;  2CQS A;  2EAB A;  1TXK A;  1Z45 A;  4KFE A;  3DX3 A;  1US1 A;  4BTX A;  2F1B A;  4DUX A;  3E7J A;  1PX3 A;  1RWF A;  1HWW A;  1HXK A;  3I3B A;  2CFD A;  2WW1 A;  3NBB A;  1JOV A;  1HN1 A;  3MV1 1;  2CIR A;  3DX1 A;  3BUD A;  2E2V A;  2OOV C;  1RWH A;  3BVT A;  3BUB A;  1AV4 A;  2OQE C;  3QFZ A;  3HII A;  3A24 A;  1NS0 A;  2RDY A;  3CZN A;  3EJS A;  4MMI A;  1NSV A;  5JMD A;  3NJX A;  2OW6 A;  3S4D A;  3WA2 X;  1JZ5 A;  3OS7 A;  4UFC A;  3CZS A;  1LUR A;  1RWA A;  1NSS A;  1DYU A;  3QG0 A;  1HTY A;  2WVY A;  4FNS A;  2JKE A;  4DUV A;  3RRS A;  2WVX A;  1ULV A;  2HTA A;  1TQV A;  3BUP A;  4BZF A;  3OBA A;  2F7P A;  1V7W A;  2OOV A;  2E24 A;  2CWV A;  1K1Y A;  1QAK A;  5GW7 A;  2OQE A;  3BLB A;  1NS8 A;  3DYO A;  3LVT A;  3WFA A;  2F7O A;  3IMH A;  1LF9 A;  2EAC A;  2ALW A;  3VDB A;  1EKM A;  2F7Q A;  1RJO A;  3NBJ A;  1TQS A;  2WGQ A;  2ZXQ A;  3VD7 A;  2ZQ0 A;  3HIG A;  1QAF A;  2OW7 A;  3Q1N A;  3MUY 1;  1LOH A;  3NRE A;  2EAD A;  1N7Q A;  1RW9 A;  3BVU A;  4OJZ A;  3QFY A;  1W6G A;  1IQX A;  2BT3 A;  3BVX A;  3CZJ A;  1JZ6 A;  2CQT A;  3I3E A;  3MI6 A;  1HN0 A;  1JZ2 A;  1MMX A;  3T0B A;  2CIS A;  1F4H A;  3DEC A;  1IVW A;  1HMW A;  3D3I A;  1J0N A;  4BTW A;  3D52 A;  5E1Q A;  4J5T A;  1NS4 A;  2WW3 A;  1MMZ A;  2CG1 A;  1EGU A;  3KII A;  1RWC A;  1R33 A;  1JRQ A;  1D6Y A;  1NS7 A;  1SNZ A;  2D1W A;  3SX1 A;  2BRW A;  2WZS A;  3OB8 A;  1UI7 A;  3SEP A;  2PNC A;  3S4B A;  2CG0 A;  5CA3 A;  1PU4 A;  3SXX A;  2BRV X;  3DX0 A;  1SPU A;  3PGB A;  1JZ4 A;  1W7C A; 
#chains in the Genus database with same CATH homology
 1RWA A;  3A0O A;  1NSS A;  4FNV A;  2XSG A;  4OK2 A;  1MMU A;  3VD3 A;  3T2Q A;  2WVY A;  3NJV A;  3T2O A;  3VDC A;  1PX4 A;  1OJO A;  3VSN A;  3K25 A;  2JKE A;  2D73 A;  2E22 A;  2BRP A;  3E80 A;  1MN0 A;  4DUV A;  2WVX A;  2WW2 A;  1LF6 A;  1NSX A;  3IAQ A;  2JKA A;  1ULV A;  2HTA A;  3DYP A;  4BZF A;  2WVZ A;  5A1A A;  3OBA A;  3I3D A;  1JZ7 A;  2E24 A;  1YGA A;  2HTB A;  1K1Y A;  1HM2 A;  2JKP A;  2WCO A;  4RNL A;  1X1H A;  1L7J A;  3VDA A;  3VSM A;  1F4A A;  4BZG A;  4OK4 A;  3DYM A;  4MMH A;  3T08 A;  1NS8 A;  3MWX A;  3DYO A;  4NEI A;  3VD5 A;  3WFA A;  3T2P A;  1K1W A;  2Q1F A;  3DCD A;  1JYV A;  3IMH A;  1LF9 A;  3AFL A;  2WW0 A;  1W3Y A;  3BS6 A;  3VDB A;  1NKG A;  1RWG A;  2XHN A;  2ZXQ A;  3VD9 A;  1JYN A;  3VD7 A;  3T09 A;  1C82 A;  2ZQ0 A;  1NSR A;  3J7H A;  3WVF A;  1JYW A;  1LXK A;  1HMU A;  1UG9 A;  3Q1N A;  3MUY 1;  1LOH A;  1L7K A;  3BLC A;  3NRE A;  3T0D A;  1NSM A;  1LXM A;  1NSZ A;  1N7P A;  1F9G A;  1N7Q A;  2WDA A;  1X1I A;  1OJM A;  1RW9 A;  1N7N A;  1I8Q A;  4BZE A;  2X03 A;  1NSU A;  2FUT A;  1F1S A;  1TXK A;  4BZH A;  4OJZ A;  1Z45 A;  5JMF A;  1J0M A;  1OJP A;  1OJN A;  3BGA A;  4DUX A;  3MUZ 1;  3E7J A;  3TY1 A;  1X1J A;  1JZ8 A;  3VD4 A;  3CZJ A;  1N7R A;  1JZ6 A;  3I3E A;  1HN0 A;  1MMY A;  1MMX A;  1JZ2 A;  1PX3 A;  4DUW A;  1RWF A;  1NS2 A;  2CIS A;  1F4H A;  3DEC A;  3T0B A;  1HMW A;  1YQ2 A;  1J0N A;  1DP0 A;  3I3B A;  5E1Q A;  1JYX A;  4J5T A;  2WW1 A;  1JOV A;  1HN1 A;  1NS4 A;  2WW3 A;  3MV1 1;  2CIR A;  1MMZ A;  1EGU A;  2CIQ A;  1CB8 A;  1RWC A;  1HM3 A;  1RWH A;  1NS7 A;  1SNZ A;  3IAP A;  1K1X A;  3MV0 1;  2BRW A;  2WZS A;  3OB8 A;  3A24 A;  1NS0 A;  3SEP A;  1SO0 A;  4MMI A;  1JZ3 A;  1NSV A;  4AQ0 A;  5JMD A;  2BRV X;  2WVX B;  3NJX A;  3ECQ A;  1N7O A;  2FUQ A;  1JZ5 A;  3OS7 A;  1JZ4 A;  3E1F 1;  4TTG A;  3T0A A;  1LUR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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