3WVFA

Crystal structure of yidc from escherichia coli
Total Genus 115
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
473
structure length
448
Chain Sequence
b'GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQ'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Membrane protein insertase YidC
publication title Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Chaperone
total genus 115
structure length 448
sequence length 473
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02096 60KD_IMP 60Kd inner membrane protein
A PF14849 YidC_periplas YidC periplasmic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.98.90 Mainly Beta Distorted Sandwich Beta-galactosidase; Chain A, domain 5 Beta-galactosidase; Chain A, domain 5 3wvfA01
3BLCA 3WVFA 3BS6A
chains in the Genus database with same CATH superfamily
2W0QA 1TQVA 3HIIA 2ZQ0A 1W3YA 3E7JA 4KFDA 3MUZ1 2F7PA 2HTAA 2CWVA 1LVNA 3E80A 4FNSA 3DDFA 3I3BA 1RJOA 1N7NA 4KTPA 1IQXA 3BUIA 1HM2A 3T0DA 1NSSA 3J7HA 3QG0A 1WMPA 2OOVA 3VD4A 1QAKA 4FNVA 1OJPA 1HMWA 1PX4A 1N7PA 4OK4A 3S4AA 4TTGA 3W7WA 3VSMA 1MMZA 4FNRA 3WVFA 2WVZA 1SO0A 2BRPA 3MPHA 2WDAA 2FUTA 1D6YA 1IQYA 2OQEA 2XSGA 1NSMA 3BS6A 3DX4A 1O7DD 4BTYA 1NSVA 1JZ7A 1W2ZA 3MV11 3T0BA 2BRVX 1LF6A 1ULVA 1AVLA 3EJPA 1L7KA 3T08A 1W4NA 4NEIA 4EV5A 3AMOA 3I3EA 1HMUA 2EACA 1MMXA 3CZNA 3D3IA 1JZ4A 3OBAA 3VDBA 2CQSA 1W7CA 1JYWA 3MI6A 2E2TA 2WOHA 1IVUA 4BZEA 3KN4A 3VD7A 4OK2A 1NSRA 3X41A 2C10A 4KFEA 1V7XA 1SIIA 3BUBA 1HM3A 2CFWA 1K1YA 1HTYA 3NJVA 4KFFA 2WZSA 1OACA 1TU5A 3W7TA 3ECQA 3ACSA 5KBPA 4BZHA 3QFYA 1IU7A 1TQSA 1LF9A 1RWAA 2WW1A 3OS7A 2CIQA 4J5TA 1JZ2A 1D6ZA 3X3YA 2BRWA 1C82A 1J0NA 3D50A 3T0UA 3DDGA 3T2QA 2EAEA 2WVYA 1UI8A 1N7QA 4DUVA 3BVUA 3SXXA 1MMUA 3QFZA 1AV4A 3Q1NA 3WA3A 3AFJA 1K1WA 2PNCA 2OW7A 3S4BA 1WMOA 1HN0A 1QWUA 2FYVA 3I3DA 2OW6A 3BLBA 3AMOB 2E2UA 3NBBA 4BZFA 3DECA 1W6CA 4FNTA 3VD9A 3DX2A 3CV5A 3VDAA 3BLCA 1N7RA 2E2VA 1EGUA 3DYMA 1RKYA 3EJSA 1J0MA 1SPUA 5JMFA 2F7OA 3KIIA 3W7SA 1TQUA 3T2OA 1UI7A 1QX1A 3X3XA 1JZ5A 2X03A 3D51A 1JZ6A 3K25A 3D4YA 4FNPA 2E22A 1RWGA 1OJNA 2OOVC 4BZGA 2F1BA 3VD3A 2EABA 1RWCA 3S4DA 3A24A 3NBJA 3LVTA 1D6UA 1IVVA 1R34A 1SIHA 3BUDA 5E1QA 2OQEC 1JRQA 1H54A 1R33A 2WW0A 3ACTA 1SNZA 4KTRA 1JZ3A 2XHNA 3TY1A 3K5TA 3LOYA 1RWHA 1MN0A 1DP0A 3MV01 3VD5A 2Y73A 3IMHA 2ALWA 2F18A 3BVVA 1LOHA 3CZJA 1L7JA 2RDYA 4BTXA 2E24A 1JZ8A 1F4AA 2Y74A 1N7OA 1W6GA 2CFLA 2JKEA 1JYVA 1F1SA 2WO0A 2YFOA 1KSIA 2CG0A 1NS4A 3BVWA 3DX3A 1JYNA 2C11A 2JKAA 1V7VA 3EJRA 2D1WA 5CA3A 5JMDA 1RWFA 2F7QA 2CWTA 1YQ2A 4MMHA 1I8QA 3HIGA 1LURA 4BTWA 2XN2A 4UFCA 1F4HA 2CIRA 3BUPA 3EJQA 1UG9A 3D4ZA 2Q1FA 3W7UA 1W5ZA 1X1JA 1RW9A 1NKGA 1F9GA 3DCDA 2ZXQA 2CQTA 2WOFA 3SX1A 2XN0A 1NS2A 1TQWA 3T2PA 1QALA 1K1XA 2CFKA 3DX1A 3X40A 3VDCA 1NSXA 3ALAA 2CWUA 3BVTA 1PX3A 1N9EA 3IAQA 1NS0A 3T0AA 4MMIA 1IVWA 1TXKA 3NJXA 2XN1A 3BUQA 1PU4A 3S4CA 1JYXA 1HXKA 2EADA 2WYHA 3RRSA 2WYIA 4FNUA 4K3AA 1OJMA 3X3ZA 4EV2A 5A1AA 2WVXB 2FUQA 2YFNA 1US1A 3QDEA 4DUXA 1OJOA 2CFGA 1NS7A 3OB8A 1MMYA 1PS3A 3DYOA 3WIQA 3RSYA 3VSNA 2WW2A 3EJUA 1NS8A 3WFAA 1X1IA 2CG1A 1IVXA 2WCOA 1NSZA 3BGAA 1JOVA 2WGQA 3D52A 1DYUA 3EJTA 1YGAA 1X1HA 1Z45A 2D73A 1V7WA 3DX0A 4AQ0A 3IAPA 4OJZA 3PGBA 1A2VA 2BT3A 3AFLA 3BVXA 3HI7A 3X42A 2F7RA 3CZSA 4K35A 2WVXA 3MUY1 1LXMA 3N9HA 3DYPA 5GW7A 3SEPA 1LXKA 2HTBA 1CB8A 3T09A 1AVKA 2F1AA 3A0OA 1TQTA 3E1F1 2JKPA 3W7XA 1HN1A 2CFDA 3WA2X 2CISA 3WIRA 3NREA 1EKMA 2WW3A 2YX9A 4RNLA 1WMNA 1QAFA 1QWNA 3MWXA 2ZL8A 1HWWA 4FNQA 4DUWA 1NSUA
chains in the Genus database with same CATH topology
3A24A 3IAQA 3NJVA 1NS0A 2WZSA 3T0AA 4MMIA 1TXKA 3NJXA 2ZQ0A 1W3YA 3E7JA 3ECQA 3MUZ1 4BZHA 5E1QA 2HTAA 3E80A 1LF9A 1RWAA 3I3BA 1N7NA 1JYXA 2WW1A 2WW0A 3OS7A 1SNZA 2CIQA 4J5TA 1JZ2A 1JZ3A 2XHNA 1OJMA 3TY1A 2BRWA 1RWHA 1C82A 1J0NA 1MN0A 1DP0A 1HM2A 3T0DA 1NSSA 3MV01 3VD5A 5A1AA 2WVXB 3J7HA 3IMHA 2FUQA 3T2QA 3VD4A 4DUXA 1OJOA 2WVYA 4FNVA 1NS7A 1OJPA 1HMWA 1PX4A 1N7PA 3OB8A 4OK4A 1MMYA 3DYOA 4TTGA 3VSMA 1MMZA 1N7QA 1LOHA 4DUVA 3CZJA 3WVFA 3VSNA 2WVZA 2WW2A 1L7JA 1SO0A 2BRPA 1NS8A 2WDAA 3WFAA 2FUTA 2E24A 1JZ8A 1MMUA 1X1IA 3Q1NA 1F4AA 2WCOA 1K1WA 1NSMA 1N7OA 2JKEA 1NSZA 2XSGA 1JYVA 1F1SA 1JOVA 3BGAA 1NS4A 3BS6A 1JYNA 1HN0A 2JKAA 1YGAA 1X1HA 5JMDA 1Z45A 1NSVA 3I3DA 1JZ7A 1RWFA 2D73A 1YQ2A 4AQ0A 3MV11 3IAPA 4MMHA 4OJZA 4BZFA 3T0BA 1I8QA 2BRVX 1LF6A 1LURA 3AFLA 3DECA 1ULVA 3VD9A 1L7KA 1F4HA 3VDAA 3BLCA 1N7RA 2WVXA 3T08A 3MUY1 1LXMA 3DYPA 3SEPA 4NEIA 1EGUA 2CIRA 3DYMA 3I3EA 1UG9A 1LXKA 1HMUA 1J0MA 5JMFA 2HTBA 1MMXA 2Q1FA 1CB8A 3T09A 1JZ4A 3OBAA 3VDBA 1X1JA 1RW9A 1NKGA 1F9GA 3A0OA 3DCDA 1JYWA 2ZXQA 3T2OA 3E1F1 2JKPA 4BZEA 3VD7A 1HN1A 4OK2A 1NSRA 1JZ5A 2X03A 1JZ6A 3K25A 2CISA 3NREA 2WW3A 4RNLA 1NS2A 3T2PA 2E22A 1K1XA 1RWGA 1OJNA 1HM3A 4BZGA 3VDCA 1K1YA 3MWXA 1NSXA 4DUWA 1NSUA 3VD3A 1PX3A 1RWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BLC A;  3WVF A;  3BS6 A; 
#chains in the Genus database with same CATH topology
 2W0Q A;  1TQV A;  3HII A;  2ZQ0 A;  1W3Y A;  3E7J A;  4KFD A;  3MUZ 1;  2F7P A;  2HTA A;  2CWV A;  1LVN A;  3E80 A;  4FNS A;  3DDF A;  3I3B A;  1RJO A;  1N7N A;  4KTP A;  1IQX A;  3BUI A;  1HM2 A;  3T0D A;  1NSS A;  3J7H A;  3QG0 A;  1WMP A;  2OOV A;  3VD4 A;  1QAK A;  4FNV A;  1OJP A;  1HMW A;  1PX4 A;  1N7P A;  4OK4 A;  3S4A A;  4TTG A;  3W7W A;  3VSM A;  1MMZ A;  4FNR A;  3WVF A;  2WVZ A;  1SO0 A;  2BRP A;  3MPH A;  2WDA A;  2FUT A;  1D6Y A;  1IQY A;  2OQE A;  2XSG A;  1NSM A;  3BS6 A;  3DX4 A;  1O7D D;  4BTY A;  1NSV A;  1JZ7 A;  1W2Z A;  3MV1 1;  3T0B A;  2BRV X;  1LF6 A;  1ULV A;  1AVL A;  3EJP A;  1L7K A;  3T08 A;  1W4N A;  4NEI A;  4EV5 A;  3AMO A;  3I3E A;  1HMU A;  2EAC A;  1MMX A;  3CZN A;  3D3I A;  1JZ4 A;  3OBA A;  3VDB A;  2CQS A;  1W7C A;  1JYW A;  3MI6 A;  2E2T A;  2WOH A;  1IVU A;  4BZE A;  3KN4 A;  3VD7 A;  4OK2 A;  1NSR A;  3X41 A;  2C10 A;  4KFE A;  1V7X A;  1SII A;  3BUB A;  1HM3 A;  2CFW A;  1K1Y A;  1HTY A;  3NJV A;  4KFF A;  2WZS A;  1OAC A;  1TU5 A;  3W7T A;  3ECQ A;  3ACS A;  5KBP A;  4BZH A;  3QFY A;  1IU7 A;  1TQS A;  1LF9 A;  1RWA A;  2WW1 A;  3OS7 A;  2CIQ A;  4J5T A;  1JZ2 A;  1D6Z A;  3X3Y A;  2BRW A;  1C82 A;  1J0N A;  3D50 A;  3T0U A;  3DDG A;  3T2Q A;  2EAE A;  2WVY A;  1UI8 A;  1N7Q A;  4DUV A;  3BVU A;  3SXX A;  1MMU A;  3QFZ A;  1AV4 A;  3Q1N A;  3WA3 A;  3AFJ A;  1K1W A;  2PNC A;  2OW7 A;  3S4B A;  1WMO A;  1HN0 A;  1QWU A;  2FYV A;  3I3D A;  2OW6 A;  3BLB A;  3AMO B;  2E2U A;  3NBB A;  4BZF A;  3DEC A;  1W6C A;  4FNT A;  3VD9 A;  3DX2 A;  3CV5 A;  3VDA A;  3BLC A;  1N7R A;  2E2V A;  1EGU A;  3DYM A;  1RKY A;  3EJS A;  1J0M A;  1SPU A;  5JMF A;  2F7O A;  3KII A;  3W7S A;  1TQU A;  3T2O A;  1UI7 A;  1QX1 A;  3X3X A;  1JZ5 A;  2X03 A;  3D51 A;  1JZ6 A;  3K25 A;  3D4Y A;  4FNP A;  2E22 A;  1RWG A;  1OJN A;  2OOV C;  4BZG A;  2F1B A;  3VD3 A;  2EAB A;  1RWC A;  3S4D A;  3A24 A;  3NBJ A;  3LVT A;  1D6U A;  1IVV A;  1R34 A;  1SIH A;  3BUD A;  5E1Q A;  2OQE C;  1JRQ A;  1H54 A;  1R33 A;  2WW0 A;  3ACT A;  1SNZ A;  4KTR A;  1JZ3 A;  2XHN A;  3TY1 A;  3K5T A;  3LOY A;  1RWH A;  1MN0 A;  1DP0 A;  3MV0 1;  3VD5 A;  2Y73 A;  3IMH A;  2ALW A;  2F18 A;  3BVV A;  1LOH A;  3CZJ A;  1L7J A;  2RDY A;  4BTX A;  2E24 A;  1JZ8 A;  1F4A A;  2Y74 A;  1N7O A;  1W6G A;  2CFL A;  2JKE A;  1JYV A;  1F1S A;  2WO0 A;  2YFO A;  1KSI A;  2CG0 A;  1NS4 A;  3BVW A;  3DX3 A;  1JYN A;  2C11 A;  2JKA A;  1V7V A;  3EJR A;  2D1W A;  5CA3 A;  5JMD A;  1RWF A;  2F7Q A;  2CWT A;  1YQ2 A;  4MMH A;  1I8Q A;  3HIG A;  1LUR A;  4BTW A;  2XN2 A;  4UFC A;  1F4H A;  2CIR A;  3BUP A;  3EJQ A;  1UG9 A;  3D4Z A;  2Q1F A;  3W7U A;  1W5Z A;  1X1J A;  1RW9 A;  1NKG A;  1F9G A;  3DCD A;  2ZXQ A;  2CQT A;  2WOF A;  3SX1 A;  2XN0 A;  1NS2 A;  1TQW A;  3T2P A;  1QAL A;  1K1X A;  2CFK A;  3DX1 A;  3X40 A;  3VDC A;  1NSX A;  3ALA A;  2CWU A;  3BVT A;  1PX3 A;  1N9E A;  3IAQ A;  1NS0 A;  3T0A A;  4MMI A;  1IVW A;  1TXK A;  3NJX A;  2XN1 A;  3BUQ A;  1PU4 A;  3S4C A;  1JYX A;  1HXK A;  2EAD A;  2WYH A;  3RRS A;  2WYI A;  4FNU A;  4K3A A;  1OJM A;  3X3Z A;  4EV2 A;  5A1A A;  2WVX B;  2FUQ A;  2YFN A;  1US1 A;  3QDE A;  4DUX A;  1OJO A;  2CFG A;  1NS7 A;  3OB8 A;  1MMY A;  1PS3 A;  3DYO A;  3WIQ A;  3RSY A;  3VSN A;  2WW2 A;  3EJU A;  1NS8 A;  3WFA A;  1X1I A;  2CG1 A;  1IVX A;  2WCO A;  1NSZ A;  3BGA A;  1JOV A;  2WGQ A;  3D52 A;  1DYU A;  3EJT A;  1YGA A;  1X1H A;  1Z45 A;  2D73 A;  1V7W A;  3DX0 A;  4AQ0 A;  3IAP A;  4OJZ A;  3PGB A;  1A2V A;  2BT3 A;  3AFL A;  3BVX A;  3HI7 A;  3X42 A;  2F7R A;  3CZS A;  4K35 A;  2WVX A;  3MUY 1;  1LXM A;  3N9H A;  3DYP A;  5GW7 A;  3SEP A;  1LXK A;  2HTB A;  1CB8 A;  3T09 A;  1AVK A;  2F1A A;  3A0O A;  1TQT A;  3E1F 1;  2JKP A;  3W7X A;  1HN1 A;  2CFD A;  3WA2 X;  2CIS A;  3WIR A;  3NRE A;  1EKM A;  2WW3 A;  2YX9 A;  4RNL A;  1WMN A;  1QAF A;  1QWN A;  3MWX A;  2ZL8 A;  1HWW A;  4FNQ A;  4DUW A;  1NSU A; 
#chains in the Genus database with same CATH homology
 3A24 A;  3IAQ A;  3NJV A;  1NS0 A;  2WZS A;  3T0A A;  4MMI A;  1TXK A;  3NJX A;  2ZQ0 A;  1W3Y A;  3E7J A;  3ECQ A;  3MUZ 1;  4BZH A;  5E1Q A;  2HTA A;  3E80 A;  1LF9 A;  1RWA A;  3I3B A;  1N7N A;  1JYX A;  2WW1 A;  2WW0 A;  3OS7 A;  1SNZ A;  2CIQ A;  4J5T A;  1JZ2 A;  1JZ3 A;  2XHN A;  1OJM A;  3TY1 A;  2BRW A;  1RWH A;  1C82 A;  1J0N A;  1MN0 A;  1DP0 A;  1HM2 A;  3T0D A;  1NSS A;  3MV0 1;  3VD5 A;  5A1A A;  2WVX B;  3J7H A;  3IMH A;  2FUQ A;  3T2Q A;  3VD4 A;  4DUX A;  1OJO A;  2WVY A;  4FNV A;  1NS7 A;  1OJP A;  1HMW A;  1PX4 A;  1N7P A;  3OB8 A;  4OK4 A;  1MMY A;  3DYO A;  4TTG A;  3VSM A;  1MMZ A;  1N7Q A;  1LOH A;  4DUV A;  3CZJ A;  3WVF A;  3VSN A;  2WVZ A;  2WW2 A;  1L7J A;  1SO0 A;  2BRP A;  1NS8 A;  2WDA A;  3WFA A;  2FUT A;  2E24 A;  1JZ8 A;  1MMU A;  1X1I A;  3Q1N A;  1F4A A;  2WCO A;  1K1W A;  1NSM A;  1N7O A;  2JKE A;  1NSZ A;  2XSG A;  1JYV A;  1F1S A;  1JOV A;  3BGA A;  1NS4 A;  3BS6 A;  1JYN A;  1HN0 A;  2JKA A;  1YGA A;  1X1H A;  5JMD A;  1Z45 A;  1NSV A;  3I3D A;  1JZ7 A;  1RWF A;  2D73 A;  1YQ2 A;  4AQ0 A;  3MV1 1;  3IAP A;  4MMH A;  4OJZ A;  4BZF A;  3T0B A;  1I8Q A;  2BRV X;  1LF6 A;  1LUR A;  3AFL A;  3DEC A;  1ULV A;  3VD9 A;  1L7K A;  1F4H A;  3VDA A;  3BLC A;  1N7R A;  2WVX A;  3T08 A;  3MUY 1;  1LXM A;  3DYP A;  3SEP A;  4NEI A;  1EGU A;  2CIR A;  3DYM A;  3I3E A;  1UG9 A;  1LXK A;  1HMU A;  1J0M A;  5JMF A;  2HTB A;  1MMX A;  2Q1F A;  1CB8 A;  3T09 A;  1JZ4 A;  3OBA A;  3VDB A;  1X1J A;  1RW9 A;  1NKG A;  1F9G A;  3A0O A;  3DCD A;  1JYW A;  2ZXQ A;  3T2O A;  3E1F 1;  2JKP A;  4BZE A;  3VD7 A;  1HN1 A;  4OK2 A;  1NSR A;  1JZ5 A;  2X03 A;  1JZ6 A;  3K25 A;  2CIS A;  3NRE A;  2WW3 A;  4RNL A;  1NS2 A;  3T2P A;  2E22 A;  1K1X A;  1RWG A;  1OJN A;  1HM3 A;  4BZG A;  3VDC A;  1K1Y A;  3MWX A;  1NSX A;  4DUW A;  1NSU A;  3VD3 A;  1PX3 A;  1RWC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...