The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
308
|
sequence length |
995
|
structure length |
983
|
Chain Sequence |
b'QPEWQSQYAVGLNKLDPHTYVWPYADASEVEKGTFEQSPYYMSLNGQWKFHWVKNPDTRPKDFYKPSYYTGGWADIKVPGNWERQGYGTAIYVNETYEFDDKMFNFKKNPPLVPYKENEVGSYRRTFKVPAGWEGRRVVLCCEGVISFYYVWVNGEFLGYNQGSKTAAEWDITDKLTDGENTIALEVYRWSSGAYLECQDMWRLSGIERDVYLYSTPEQYIADYKVTSLLEKEHYKEGIFELEVAVGGTTSSIAYTLKDASDKTVLEGSRKNLIVFDEQRLPDVRRWNAEHPELYTLLLELKDAGGKVTEITGTKVGFRTSEIKNGRFCINGVPVLVKGVNRHEHSQLGRTVSKELMEQDIRLMKQHNINTVRNSHYPAHPYWYQLCDRYGLYVIDEANIESHGMGPASLAKDSTWLPAHIDRTRRMYERSKNHPSVVIWSLGNEAGNGINFERTYDWLKSVEKNRPVQYERAEENYNTDIYCRMYRSVDVIRNYVVRKDIYRPFILCEYLHAMGNSCGGMKEYWEVFENEPMAQGGCIWDWVDQSFREVDKDGKWYWTYGGDYGPKDVPSFGNFCCNGLVNAVREPHPHLLEVKKIYQNIKSTLIDKKNLTVRVKNWFDFSDLNEYILHWKVTGDDGTVLAEGNKEVACEPHATVELTLGAVQLPKTIREAYLDLGWTRKKSTPLVDTAWEIAYDQFVLPASGKVWNGKPSEAGKTTFEVDENTGALKSLCLDGEELLASPVTISLFRPATDNDNRDRMGAKLWRKAGLHTLTQKVVSLKESKTSATAQVNILNVTGKKVGDATLEYTLNHNGSLKVQTTFQPDTTWVKSIARLGLTFEMNDTYGNVTYLGRGEHETYIDRNQSGKIGIYTTTPEKMFHYYVIPQSTGNRTDVRWVKLADDSGKGCWIESDSPFQFSALPFSDLLLEKALHINDLERNGRITVHLDAKQAGVGTATCGPGVLPPYLVPLGKQTFTFTIYPVK'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Beta-galactosidase
|
| publication title |
Crystal Structure of a Glycosyl Hydrolases Family 2 protein from Bacteroides thetaiotaomicron.
rcsb |
| source organism |
Bacteroides thetaiotaomicron vpi-5482
|
| molecule tags |
Hydrolase
|
| total genus |
308
|
| structure length |
983
|
| sequence length |
995
|
| ec nomenclature | |
| pdb deposition date | 2008-06-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00703 | Glyco_hydro_2 | Glycosyl hydrolases family 2 |
| A | PF02836 | Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain |
| A | PF02837 | Glyco_hydro_2_N | Glycosyl hydrolases family 2, sugar binding domain |
| A | PF02929 | Bgal_small_N | Beta galactosidase small chain |
| A | PF16353 | DUF4981 | Domain of unknown function(DUF4981) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
| Mainly Beta | Distorted Sandwich | Beta-galactosidase; Chain A, domain 5 | Beta-galactosidase; Chain A, domain 5 | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases |
