1P7NA

Dimeric rous sarcoma virus capsid protein structure with an upstream 25-amino acid residue extension of c-terminal of gag p10 protein
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
176
structure length
176
Chain Sequence
GPTSPGPALTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (16-28)TIV4 (30-33)AH3 (34-44)AH5 (63-86)EMPTYTI2 (90-93)TI3 (96-99)AH6 (103-107)TII1 (110-113)TIV5 (111-114)AH7 (117-123)AH4 (50-61)TII2 (113-116)AH8 (126-145)O2 (145-147)TI1 (87-90)Updating...
connected with : NaN
publication title Dimeric rous sarcoma virus capsid protein structure relevant to immature gag assembly
pubmed doi rcsb
molecule keywords GAG POLYPROTEIN CAPSID PROTEIN P27
molecule tags Viral protein
source organism Rous sarcoma virus
total genus 56
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2003-05-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 1p7nA00
3BP9A 2X2DD 5HGLA 2GOLB 1M9XC 2EIAA 1U7KA 4XFZA 4B4NA 4PH2A 2X82A 4E91A 1AK4C 2KGFA 1M9FC 2LF4A 4U0CA 2XGYA 2M8PA 4XRQA 2JPRA 3P05A 2GONA 4LQWC 2Y4ZA 4U0EA 1E6JP 1EM9A 2PXRC 4DGEC 1EIAA 1AFVA 4U0AA 4PH0A 4J93A 4XROA 5JPAA 4U0DA 2X83A 3NTEA 4XFXA 2XDEA 2M8NA 2PWOA 1M9CC 2PWMA 4QNBA 4DGAC 1L6NA 2WLVB 1M9DC 2XGUA 5HGOA 1M9YC 2WLVA 4U0BA 2V4XA 1GWPA 1QRJA 2XGVA 5HGKA 1G03A 2M8LA 3H47A 4U0FA 3H4EA 1M9EC 1D1DA 4NX4C 5HGMA 3MGEA 4INBA 4PH3A 5HGNA 4HTWA 4E92A 4WYMA 4XFYA 1P7NA
chains in the Genus database with same CATH superfamily
3BP9A 2X2DD 5HGLA 2GOLB 1M9XC 2EIAA 1U7KA 4XFZA 4B4NA 4PH2A 2X82A 4E91A 1AK4C 2KGFA 1M9FC 2LF4A 4U0CA 2XGYA 2M8PA 4XRQA 2JPRA 3P05A 2GONA 4LQWC 2Y4ZA 4U0EA 1E6JP 1EM9A 2PXRC 4DGEC 1EIAA 1AFVA 4U0AA 4PH0A 4J93A 4XROA 5JPAA 4U0DA 2X83A 3NTEA 4XFXA 2XDEA 2M8NA 2PWOA 1M9CC 2PWMA 4QNBA 4DGAC 1L6NA 2WLVB 1M9DC 2XGUA 5HGOA 1M9YC 2WLVA 4U0BA 2V4XA 1GWPA 1QRJA 2XGVA 5HGKA 1G03A 2M8LA 3H47A 4U0FA 3H4EA 1M9EC 1D1DA 4NX4C 5HGMA 3MGEA 4INBA 4PH3A 5HGNA 4HTWA 4E92A 4WYMA 4XFYA 1P7NA
chains in the Genus database with same CATH topology
3BP9A 2X2DD 5HGLA 2GOLB 1M9XC 2EIAA 1U7KA 4XFZA 4B4NA 4PH2A 2X82A 4E91A 1AK4C 2KGFA 1M9FC 2LF4A 4U0CA 2XGYA 2M8PA 4XRQA 2JPRA 3P05A 2GONA 4LQWC 2Y4ZA 4U0EA 1E6JP 1EM9A 2PXRC 4DGEC 1EIAA 1AFVA 4U0AA 4PH0A 4J93A 4XROA 5JPAA 4U0DA 2X83A 3NTEA 4XFXA 2XDEA 2M8NA 2PWOA 1M9CC 2PWMA 4QNBA 4DGAC 1L6NA 2WLVB 1M9DC 2XGUA 5HGOA 1M9YC 2WLVA 4U0BA 2V4XA 1GWPA 1QRJA 2XGVA 5HGKA 1G03A 2M8LA 3H47A 4U0FA 3H4EA 1M9EC 1D1DA 4NX4C 5HGMA 3MGEA 4INBA 4PH3A 5HGNA 4HTWA 4E92A 4WYMA 4XFYA 1P7NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BP9 A;  2X2D D;  5HGL A;  2GOL B;  1M9X C;  2EIA A;  1U7K A;  4XFZ A;  4B4N A;  4PH2 A;  2X82 A;  4E91 A;  1AK4 C;  2KGF A;  1M9F C;  2LF4 A;  4U0C A;  2XGY A;  2M8P A;  4XRQ A;  2JPR A;  3P05 A;  2GON A;  4LQW C;  2Y4Z A;  4U0E A;  1E6J P;  1EM9 A;  2PXR C;  4DGE C;  1EIA A;  1AFV A;  4U0A A;  4PH0 A;  4J93 A;  4XRO A;  5JPA A;  4U0D A;  2X83 A;  3NTE A;  4XFX A;  2XDE A;  2M8N A;  2PWO A;  1M9C C;  2PWM A;  4QNB A;  4DGA C;  1L6N A;  2WLV B;  1M9D C;  2XGU A;  5HGO A;  1M9Y C;  2WLV A;  4U0B A;  2V4X A;  1GWP A;  1QRJ A;  2XGV A;  5HGK A;  1G03 A;  2M8L A;  3H47 A;  4U0F A;  3H4E A;  1M9E C;  1D1D A;  4NX4 C;  5HGM A;  3MGE A;  4INB A;  4PH3 A;  5HGN A;  4HTW A;  4E92 A;  4WYM A;  4XFY A;  1P7N A; 
#chains in the Genus database with same CATH topology
 3BP9 A;  2X2D D;  5HGL A;  2GOL B;  1M9X C;  2EIA A;  1U7K A;  4XFZ A;  4B4N A;  4PH2 A;  2X82 A;  4E91 A;  1AK4 C;  2KGF A;  1M9F C;  2LF4 A;  4U0C A;  2XGY A;  2M8P A;  4XRQ A;  2JPR A;  3P05 A;  2GON A;  4LQW C;  2Y4Z A;  4U0E A;  1E6J P;  1EM9 A;  2PXR C;  4DGE C;  1EIA A;  1AFV A;  4U0A A;  4PH0 A;  4J93 A;  4XRO A;  5JPA A;  4U0D A;  2X83 A;  3NTE A;  4XFX A;  2XDE A;  2M8N A;  2PWO A;  1M9C C;  2PWM A;  4QNB A;  4DGA C;  1L6N A;  2WLV B;  1M9D C;  2XGU A;  5HGO A;  1M9Y C;  2WLV A;  4U0B A;  2V4X A;  1GWP A;  1QRJ A;  2XGV A;  5HGK A;  1G03 A;  2M8L A;  3H47 A;  4U0F A;  3H4E A;  1M9E C;  1D1D A;  4NX4 C;  5HGM A;  3MGE A;  4INB A;  4PH3 A;  5HGN A;  4HTW A;  4E92 A;  4WYM A;  4XFY A;  1P7N A; 
#chains in the Genus database with same CATH homology
 3BP9 A;  2X2D D;  5HGL A;  2GOL B;  1M9X C;  2EIA A;  1U7K A;  4XFZ A;  4B4N A;  4PH2 A;  2X82 A;  4E91 A;  1AK4 C;  2KGF A;  1M9F C;  2LF4 A;  4U0C A;  2XGY A;  2M8P A;  4XRQ A;  2JPR A;  3P05 A;  2GON A;  4LQW C;  2Y4Z A;  4U0E A;  1E6J P;  1EM9 A;  2PXR C;  4DGE C;  1EIA A;  1AFV A;  4U0A A;  4PH0 A;  4J93 A;  4XRO A;  5JPA A;  4U0D A;  2X83 A;  3NTE A;  4XFX A;  2XDE A;  2M8N A;  2PWO A;  1M9C C;  2PWM A;  4QNB A;  4DGA C;  1L6N A;  2WLV B;  1M9D C;  2XGU A;  5HGO A;  1M9Y C;  2WLV A;  4U0B A;  2V4X A;  1GWP A;  1QRJ A;  2XGV A;  5HGK A;  1G03 A;  2M8L A;  3H47 A;  4U0F A;  3H4E A;  1M9E C;  1D1D A;  4NX4 C;  5HGM A;  3MGE A;  4INB A;  4PH3 A;  5HGN A;  4HTW A;  4E92 A;  4WYM A;  4XFY A;  1P7N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.