2RDY | Genus

Total Genus 255

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	255
sequence length	789
structure length	787
Chain Sequence	LKIQFDFPASFWTEALPIGNGNLGAMVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVLPKVRELIAQEKYEEADQLSRDMMGPYTQSYLPFGDLNIFMDHGQVVAPHYHRELDLSTGIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSVEHYTISGTAPEHVSPSYYDEENPVRYGHPDMSQGMTFHGRLAAVNEGGSLKVDADGLHVMGATCATLYFSASTSFDPSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKLFNRVSLHLGESIAPADMSTDQRIKEYGSRDLGLVELLFQYGRYLMIASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEMNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPMGGVWLTQHLWEHYTFGEDEAYLRDTAYPIMKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGEKGYAVSSATTMDLSLIAECFDNCIQAAKRLSIDEDFVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNLFEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNMLTLIKEDESMQHRGGVYANLFGAHPPFQIDGNFSATAGIAEMLLQSHQGYLEFLPALPDSWKDGYVKGLRGRGGYEVDLAWTNGALVKVEIVSTKTQTCEVLTRISMRITESGEEVEGDVLDSGRMSFQVEKGKRYVLNR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Bacillus halodurans c-125
publication title	Crystal structure of a putative glycoside hydrolase family protein from Bacillus halodurans. rcsb
molecule keywords	BH0842 protein
total genus	255
structure length	787
sequence length	789
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-09-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14498	Glyco_hyd_65N_2	Glycosyl hydrolase family 65, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.98.50	Mainly Beta	Distorted Sandwich	Beta-galactosidase; Chain A, domain 5	putative glycoside hydrolase family protein from bacillus halodurans	2rdyA01

3W7WA 2EADA 5CA3A 3W7SA 2EACA 3W7UA 2EABA 3W7TA 2EAEA 4UFCA 5GW7A 3W7XA 3D3IA 2RDYA
chains in the Genus database with same CATH superfamily

1LOHA 1J0MA 2CFDA 3LOYA 3RSYA 1YQ2A 4MMIA 4FNUA 3WVFA 5GW7A 1N7NA 3VDBA 3E80A 2ZXQA 2Y74A 3NBJA 1Z45A 3BVTA 1V7WA 3KIIA 3D3IA 2JKEA 1SNZA 1O7DD 3VD4A 3BGAA 1ULVA 1LXKA 1RJOA 3W7XA 1N9EA 1EKMA 2CWUA 3TY1A 2CG1A 1WMNA 3BVWA 3X40A 1UG9A 3EJTA 2YFNA 2XN0A 2YX9A 2WYIA 1TQSA 4FNQA 2BRPA 1K1YA 4FNRA 1LF9A 1TQUA 3W7UA 1SPUA 3MI6A 3BUBA 1SIHA 3CZNA 2WVXB 3OBAA 2WGQA 1RWGA 3NBBA 4KTPA 3VD5A 1JZ2A 1OACA 5JMDA 2JKAA 3W7WA 1QAFA 1RWFA 1JZ8A 3VD3A 2WW1A 1YGAA 1KSIA 3WA2X 3VSNA 3E7JA 2CFWA 4K35A 1W5ZA 1NSUA 5KBPA 1HN0A 1NS7A 3EJRA 4RNLA 1MMYA 1W6CA 4KFFA 4BTWA 2HTAA 1N7OA 1L7JA 1TQTA 2FYVA 1NKGA 3DX2A 3NJVA 3OS7A 3BLBA 3ACSA 3T0DA 3DYOA 3I3EA 1JZ4A 3X41A 4UFCA 3K25A 2W0QA 1DP0A 2CFKA 3WA3A 2F7OA 1A2VA 3S4CA 2OOVC 3N9HA 3MV11 4NEIA 4K3AA 3T2PA 1D6YA 3BUIA 1L7KA 2BRVX 2HTBA 3HIIA 2EABA 4FNVA 3VD7A 3QFYA 1CB8A 1WMOA 1JZ6A 4EV5A 4EV2A 3DECA 1IVXA 1IQXA 1H54A 1UI8A 1TQVA 2WW0A 1PS3A 3A0OA 3WIRA 1JYVA 1N7RA 2ALWA 1R33A 1JZ7A 1R34A 1N7QA 2OW7A 1F4AA 2FUTA 1F1SA 3S4BA 3IMHA 1C82A 1D6UA 1RKYA 4BTYA 1SO0A 3A24A 3SX1A 2CISA 3DX0A 2XHNA 3EJSA 2CQSA 2F7PA 3DYMA 3EJPA 3AMOA 1RW9A 1AVLA 2CWTA 1HN1A 1HM2A 4BZFA 1MMXA 1SIIA 2BT3A 3BUPA 3DX1A 2WVYA 3T09A 5CA3A 1JRQA 1NSXA 3W7TA 2ZL8A 3D50A 3RRSA 1RWAA 2E24A 1AVKA 2OW6A 2YFOA 3BVVA 2JKPA 1NSMA 3W7SA 3MWXA 3E1F1 3HIGA 2Y73A 5A1AA 1NSSA 5JMFA 1IU7A 1X1HA 4FNPA 1JYWA 1QAKA 2OQEA 3VD9A 2WVZA 2D73A 2E22A 2WDAA 2EADA 2E2TA 4KFEA 2F18A 3DYPA 3T0BA 1W6GA 1W3YA 3D52A 1OJPA 1MMZA 3DDFA 3NREA 4KFDA 4KTRA 1NS0A 2Q1FA 4FNTA 2WW2A 2X03A 2FUQA 2WOHA 1WMPA 1HM3A 1QWNA 4DUWA 3T0AA 3QDEA 2ZQ0A 3WIQA 1V7XA 1HTYA 3DX3A 3AMOB 5E1QA 2C11A 1IVWA 2E2VA 1NSVA 1W4NA 3QFZA 4OJZA 3MUZ1 4FNSA 2E2UA 4BZGA 3D4YA 3S4AA 4BZEA 2F1AA 1MMUA 2CIRA 1HWWA 3D51A 1F9GA 1V7VA 3DDGA 2XN1A 1NS2A 4BZHA 3BVUA 3MUY1 3WFAA 1NSZA 1X1JA 3CZSA 2WW3A 2F7RA 4BTXA 1DYUA 2CFLA 3IAPA 3SEPA 1HXKA 3LVTA 2BRWA 2CG0A 3DX4A 1QWUA 2EAEA 2CWVA 1TXKA 1K1WA 1OJMA 3OB8A 3DCDA 1JYXA 3X3YA 3EJQA 3J7HA 2F1BA 3ACTA 2F7QA 3AFJA 1RWCA 1LVNA 1X1IA 1PX3A 2RDYA 3MPHA 4TTGA 1F4HA 1PU4A 3KN4A 1MN0A 3T2QA 3I3BA 3I3DA 1I8QA 1NS8A 3CZJA 4MMHA 2C10A 3AFLA 1LF6A 1JYNA 1UI7A 3HI7A 1HMUA 1TQWA 2WOFA 1N7PA 2WYHA 2WZSA 3VDCA 1IVUA 2CFGA 3PGBA 4DUVA 1JZ3A 2WO0A 1W2ZA 3T08A 3BVXA 3BLCA 3X3ZA 1HMWA 3SXXA 1US1A 1JZ5A 3VDAA 1OJNA 3T2OA 3VSMA 3K5TA 4OK4A 1W7CA 3IAQA 3BUQA 1QX1A 1K1XA 3ALAA 2OQEC 1IVVA 1EGUA 3T0UA 3X42A 2OOVA 3S4DA 2CIQA 3MV01 1JOVA 3X3XA 1LXMA 4DUXA 4OK2A 3BS6A 3Q1NA 1D6ZA 1LURA 1TU5A 2XSGA 3ECQA 4AQ0A 2WVXA 1IQYA 1PX4A 2CQTA 2D1WA 4J5TA 2WCOA 1NSRA 2EACA 3QG0A 1AV4A 2PNCA 3BUDA 1J0NA 1OJOA 2XN2A 1RWHA 1NS4A 3D4ZA 1QALA 3NJXA 3CV5A 3EJUA
chains in the Genus database with same CATH topology

3W7WA 2EADA 5CA3A 3W7SA 2EACA 3W7UA 2EABA 3W7TA 2EAEA 4UFCA 5GW7A 3W7XA 3D3IA 2RDYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3W7W A;  2EAD A;  5CA3 A;  3W7S A;  2EAC A;  3W7U A;  2EAB A;  3W7T A;  2EAE A;  4UFC A;  5GW7 A;  3W7X A;  3D3I A;  2RDY A; 
#chains in the Genus database with same CATH topology
 1LOH A;  1J0M A;  2CFD A;  3LOY A;  3RSY A;  1YQ2 A;  4MMI A;  4FNU A;  3WVF A;  5GW7 A;  1N7N A;  3VDB A;  3E80 A;  2ZXQ A;  2Y74 A;  3NBJ A;  1Z45 A;  3BVT A;  1V7W A;  3KII A;  3D3I A;  2JKE A;  1SNZ A;  1O7D D;  3VD4 A;  3BGA A;  1ULV A;  1LXK A;  1RJO A;  3W7X A;  1N9E A;  1EKM A;  2CWU A;  3TY1 A;  2CG1 A;  1WMN A;  3BVW A;  3X40 A;  1UG9 A;  3EJT A;  2YFN A;  2XN0 A;  2YX9 A;  2WYI A;  1TQS A;  4FNQ A;  2BRP A;  1K1Y A;  4FNR A;  1LF9 A;  1TQU A;  3W7U A;  1SPU A;  3MI6 A;  3BUB A;  1SIH A;  3CZN A;  2WVX B;  3OBA A;  2WGQ A;  1RWG A;  3NBB A;  4KTP A;  3VD5 A;  1JZ2 A;  1OAC A;  5JMD A;  2JKA A;  3W7W A;  1QAF A;  1RWF A;  1JZ8 A;  3VD3 A;  2WW1 A;  1YGA A;  1KSI A;  3WA2 X;  3VSN A;  3E7J A;  2CFW A;  4K35 A;  1W5Z A;  1NSU A;  5KBP A;  1HN0 A;  1NS7 A;  3EJR A;  4RNL A;  1MMY A;  1W6C A;  4KFF A;  4BTW A;  2HTA A;  1N7O A;  1L7J A;  1TQT A;  2FYV A;  1NKG A;  3DX2 A;  3NJV A;  3OS7 A;  3BLB A;  3ACS A;  3T0D A;  3DYO A;  3I3E A;  1JZ4 A;  3X41 A;  4UFC A;  3K25 A;  2W0Q A;  1DP0 A;  2CFK A;  3WA3 A;  2F7O A;  1A2V A;  3S4C A;  2OOV C;  3N9H A;  3MV1 1;  4NEI A;  4K3A A;  3T2P A;  1D6Y A;  3BUI A;  1L7K A;  2BRV X;  2HTB A;  3HII A;  2EAB A;  4FNV A;  3VD7 A;  3QFY A;  1CB8 A;  1WMO A;  1JZ6 A;  4EV5 A;  4EV2 A;  3DEC A;  1IVX A;  1IQX A;  1H54 A;  1UI8 A;  1TQV A;  2WW0 A;  1PS3 A;  3A0O A;  3WIR A;  1JYV A;  1N7R A;  2ALW A;  1R33 A;  1JZ7 A;  1R34 A;  1N7Q A;  2OW7 A;  1F4A A;  2FUT A;  1F1S A;  3S4B A;  3IMH A;  1C82 A;  1D6U A;  1RKY A;  4BTY A;  1SO0 A;  3A24 A;  3SX1 A;  2CIS A;  3DX0 A;  2XHN A;  3EJS A;  2CQS A;  2F7P A;  3DYM A;  3EJP A;  3AMO A;  1RW9 A;  1AVL A;  2CWT A;  1HN1 A;  1HM2 A;  4BZF A;  1MMX A;  1SII A;  2BT3 A;  3BUP A;  3DX1 A;  2WVY A;  3T09 A;  5CA3 A;  1JRQ A;  1NSX A;  3W7T A;  2ZL8 A;  3D50 A;  3RRS A;  1RWA A;  2E24 A;  1AVK A;  2OW6 A;  2YFO A;  3BVV A;  2JKP A;  1NSM A;  3W7S A;  3MWX A;  3E1F 1;  3HIG A;  2Y73 A;  5A1A A;  1NSS A;  5JMF A;  1IU7 A;  1X1H A;  4FNP A;  1JYW A;  1QAK A;  2OQE A;  3VD9 A;  2WVZ A;  2D73 A;  2E22 A;  2WDA A;  2EAD A;  2E2T A;  4KFE A;  2F18 A;  3DYP A;  3T0B A;  1W6G A;  1W3Y A;  3D52 A;  1OJP A;  1MMZ A;  3DDF A;  3NRE A;  4KFD A;  4KTR A;  1NS0 A;  2Q1F A;  4FNT A;  2WW2 A;  2X03 A;  2FUQ A;  2WOH A;  1WMP A;  1HM3 A;  1QWN A;  4DUW A;  3T0A A;  3QDE A;  2ZQ0 A;  3WIQ A;  1V7X A;  1HTY A;  3DX3 A;  3AMO B;  5E1Q A;  2C11 A;  1IVW A;  2E2V A;  1NSV A;  1W4N A;  3QFZ A;  4OJZ A;  3MUZ 1;  4FNS A;  2E2U A;  4BZG A;  3D4Y A;  3S4A A;  4BZE A;  2F1A A;  1MMU A;  2CIR A;  1HWW A;  3D51 A;  1F9G A;  1V7V A;  3DDG A;  2XN1 A;  1NS2 A;  4BZH A;  3BVU A;  3MUY 1;  3WFA A;  1NSZ A;  1X1J A;  3CZS A;  2WW3 A;  2F7R A;  4BTX A;  1DYU A;  2CFL A;  3IAP A;  3SEP A;  1HXK A;  3LVT A;  2BRW A;  2CG0 A;  3DX4 A;  1QWU A;  2EAE A;  2CWV A;  1TXK A;  1K1W A;  1OJM A;  3OB8 A;  3DCD A;  1JYX A;  3X3Y A;  3EJQ A;  3J7H A;  2F1B A;  3ACT A;  2F7Q A;  3AFJ A;  1RWC A;  1LVN A;  1X1I A;  1PX3 A;  2RDY A;  3MPH A;  4TTG A;  1F4H A;  1PU4 A;  3KN4 A;  1MN0 A;  3T2Q A;  3I3B A;  3I3D A;  1I8Q A;  1NS8 A;  3CZJ A;  4MMH A;  2C10 A;  3AFL A;  1LF6 A;  1JYN A;  1UI7 A;  3HI7 A;  1HMU A;  1TQW A;  2WOF A;  1N7P A;  2WYH A;  2WZS A;  3VDC A;  1IVU A;  2CFG A;  3PGB A;  4DUV A;  1JZ3 A;  2WO0 A;  1W2Z A;  3T08 A;  3BVX A;  3BLC A;  3X3Z A;  1HMW A;  3SXX A;  1US1 A;  1JZ5 A;  3VDA A;  1OJN A;  3T2O A;  3VSM A;  3K5T A;  4OK4 A;  1W7C A;  3IAQ A;  3BUQ A;  1QX1 A;  1K1X A;  3ALA A;  2OQE C;  1IVV A;  1EGU A;  3T0U A;  3X42 A;  2OOV A;  3S4D A;  2CIQ A;  3MV0 1;  1JOV A;  3X3X A;  1LXM A;  4DUX A;  4OK2 A;  3BS6 A;  3Q1N A;  1D6Z A;  1LUR A;  1TU5 A;  2XSG A;  3ECQ A;  4AQ0 A;  2WVX A;  1IQY A;  1PX4 A;  2CQT A;  2D1W A;  4J5T A;  2WCO A;  1NSR A;  2EAC A;  3QG0 A;  1AV4 A;  2PNC A;  3BUD A;  1J0N A;  1OJO A;  2XN2 A;  1RWH A;  1NS4 A;  3D4Z A;  1QAL A;  3NJX A;  3CV5 A;  3EJU A; 
#chains in the Genus database with same CATH homology
 3W7W A;  2EAD A;  5CA3 A;  3W7S A;  2EAC A;  3W7U A;  2EAB A;  3W7T A;  2EAE A;  4UFC A;  5GW7 A;  3W7X A;  3D3I A;  2RDY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RDYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations