2V4XA

Crystal structure of jaagsiekte sheep retrovirus capsid n-terminal domain
Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
131
structure length
131
Chain Sequence
PVFENNNQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIENLGTQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGIQTSYEMLIGEGPYQATDTQLNFLPGAYAQISNAARQAWKRLP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)TI1 (5-8)3H4 (105-107)S2 (8-11)TIV1 (108-111)AH3 (50-60)AH1 (16-29)TI2 (30-33)AH5 (113-129)3H1 (38-45)3H3 (100-102)AH4 (63-87)O1 (89-91)3H2 (94-97)AH2 (34-37)Updating...
connected with : NaN
publication title Structure of the Capsid Amino-Terminal Domain from the Betaretrovirus, Jaagsiekte Sheep Retrovirus.
pubmed doi rcsb
molecule keywords CAPSID PROTEIN P27
molecule tags Viral protein
source organism Jaagsiekte sheep retrovirus
total genus 46
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2008-09-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2v4xA00
2XGVA 4NX4C 5HGOA 2XGYA 4WYMA 2X82A 4XFZA 4XRQA 2M8NA 4PH2A 2GONA 2XGUA 4QNBA 5HGKA 1D1DA 3MGEA 1G03A 4B4NA 1EIAA 5JPAA 4U0AA 4E92A 4PH0A 5HGNA 1E6JP 1AFVA 1L6NA 2X2DD 2Y4ZA 2PWOA 2PXRC 5HGMA 4HTWA 2LF4A 2EIAA 4DGEC 4XROA 2JPRA 1M9DC 1AK4C 1M9CC 4U0CA 5HGLA 4DGAC 1M9FC 1M9XC 4INBA 1M9EC 2M8PA 4XFYA 3H47A 1P7NA 4E91A 4J93A 3H4EA 4LQWC 2GOLB 1GWPA 2PWMA 1U7KA 4PH3A 1M9YC 1EM9A 1QRJA 4U0EA 3BP9A 2M8LA 2KGFA 2X83A 2WLVB 4XFXA 4U0BA 3NTEA 3P05A 2WLVA 2XDEA 4U0DA 4U0FA 2V4XA
chains in the Genus database with same CATH superfamily
2XGVA 4NX4C 5HGOA 2XGYA 4WYMA 2X82A 4XFZA 4XRQA 2M8NA 4PH2A 2GONA 2XGUA 4QNBA 5HGKA 1D1DA 3MGEA 1G03A 4B4NA 1EIAA 5JPAA 4U0AA 4E92A 4PH0A 5HGNA 1E6JP 1AFVA 1L6NA 2X2DD 2Y4ZA 2PWOA 2PXRC 5HGMA 4HTWA 2LF4A 2EIAA 4DGEC 4XROA 2JPRA 1M9DC 1AK4C 1M9CC 4U0CA 5HGLA 4DGAC 1M9FC 1M9XC 4INBA 1M9EC 2M8PA 4XFYA 3H47A 1P7NA 4E91A 4J93A 3H4EA 4LQWC 2GOLB 1GWPA 2PWMA 1U7KA 4PH3A 1M9YC 1EM9A 1QRJA 4U0EA 3BP9A 2M8LA 2KGFA 2X83A 2WLVB 4XFXA 4U0BA 3NTEA 3P05A 2WLVA 2XDEA 4U0DA 4U0FA 2V4XA
chains in the Genus database with same CATH topology
2XGVA 4NX4C 5HGOA 2XGYA 4WYMA 2X82A 4XFZA 4XRQA 2M8NA 4PH2A 2GONA 2XGUA 4QNBA 5HGKA 1D1DA 3MGEA 1G03A 4B4NA 1EIAA 5JPAA 4U0AA 4E92A 4PH0A 5HGNA 1E6JP 1AFVA 1L6NA 2X2DD 2Y4ZA 2PWOA 2PXRC 5HGMA 4HTWA 2LF4A 2EIAA 4DGEC 4XROA 2JPRA 1M9DC 1AK4C 1M9CC 4U0CA 5HGLA 4DGAC 1M9FC 1M9XC 4INBA 1M9EC 2M8PA 4XFYA 3H47A 1P7NA 4E91A 4J93A 3H4EA 4LQWC 2GOLB 1GWPA 2PWMA 1U7KA 4PH3A 1M9YC 1EM9A 1QRJA 4U0EA 3BP9A 2M8LA 2KGFA 2X83A 2WLVB 4XFXA 4U0BA 3NTEA 3P05A 2WLVA 2XDEA 4U0DA 4U0FA 2V4XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XGV A;  4NX4 C;  5HGO A;  2XGY A;  4WYM A;  2X82 A;  4XFZ A;  4XRQ A;  2M8N A;  4PH2 A;  2GON A;  2XGU A;  4QNB A;  5HGK A;  1D1D A;  3MGE A;  1G03 A;  4B4N A;  1EIA A;  5JPA A;  4U0A A;  4E92 A;  4PH0 A;  5HGN A;  1E6J P;  1AFV A;  1L6N A;  2X2D D;  2Y4Z A;  2PWO A;  2PXR C;  5HGM A;  4HTW A;  2LF4 A;  2EIA A;  4DGE C;  4XRO A;  2JPR A;  1M9D C;  1AK4 C;  1M9C C;  4U0C A;  5HGL A;  4DGA C;  1M9F C;  1M9X C;  4INB A;  1M9E C;  2M8P A;  4XFY A;  3H47 A;  1P7N A;  4E91 A;  4J93 A;  3H4E A;  4LQW C;  2GOL B;  1GWP A;  2PWM A;  1U7K A;  4PH3 A;  1M9Y C;  1EM9 A;  1QRJ A;  4U0E A;  3BP9 A;  2M8L A;  2KGF A;  2X83 A;  2WLV B;  4XFX A;  4U0B A;  3NTE A;  3P05 A;  2WLV A;  2XDE A;  4U0D A;  4U0F A;  2V4X A; 
#chains in the Genus database with same CATH topology
 2XGV A;  4NX4 C;  5HGO A;  2XGY A;  4WYM A;  2X82 A;  4XFZ A;  4XRQ A;  2M8N A;  4PH2 A;  2GON A;  2XGU A;  4QNB A;  5HGK A;  1D1D A;  3MGE A;  1G03 A;  4B4N A;  1EIA A;  5JPA A;  4U0A A;  4E92 A;  4PH0 A;  5HGN A;  1E6J P;  1AFV A;  1L6N A;  2X2D D;  2Y4Z A;  2PWO A;  2PXR C;  5HGM A;  4HTW A;  2LF4 A;  2EIA A;  4DGE C;  4XRO A;  2JPR A;  1M9D C;  1AK4 C;  1M9C C;  4U0C A;  5HGL A;  4DGA C;  1M9F C;  1M9X C;  4INB A;  1M9E C;  2M8P A;  4XFY A;  3H47 A;  1P7N A;  4E91 A;  4J93 A;  3H4E A;  4LQW C;  2GOL B;  1GWP A;  2PWM A;  1U7K A;  4PH3 A;  1M9Y C;  1EM9 A;  1QRJ A;  4U0E A;  3BP9 A;  2M8L A;  2KGF A;  2X83 A;  2WLV B;  4XFX A;  4U0B A;  3NTE A;  3P05 A;  2WLV A;  2XDE A;  4U0D A;  4U0F A;  2V4X A; 
#chains in the Genus database with same CATH homology
 2XGV A;  4NX4 C;  5HGO A;  2XGY A;  4WYM A;  2X82 A;  4XFZ A;  4XRQ A;  2M8N A;  4PH2 A;  2GON A;  2XGU A;  4QNB A;  5HGK A;  1D1D A;  3MGE A;  1G03 A;  4B4N A;  1EIA A;  5JPA A;  4U0A A;  4E92 A;  4PH0 A;  5HGN A;  1E6J P;  1AFV A;  1L6N A;  2X2D D;  2Y4Z A;  2PWO A;  2PXR C;  5HGM A;  4HTW A;  2LF4 A;  2EIA A;  4DGE C;  4XRO A;  2JPR A;  1M9D C;  1AK4 C;  1M9C C;  4U0C A;  5HGL A;  4DGA C;  1M9F C;  1M9X C;  4INB A;  1M9E C;  2M8P A;  4XFY A;  3H47 A;  1P7N A;  4E91 A;  4J93 A;  3H4E A;  4LQW C;  2GOL B;  1GWP A;  2PWM A;  1U7K A;  4PH3 A;  1M9Y C;  1EM9 A;  1QRJ A;  4U0E A;  3BP9 A;  2M8L A;  2KGF A;  2X83 A;  2WLV B;  4XFX A;  4U0B A;  3NTE A;  3P05 A;  2WLV A;  2XDE A;  4U0D A;  4U0F A;  2V4X A; 
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