2WLV | Genus

Total Genus 51

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	144
structure length	144
Chain Sequence	PVQHVGGTYTHIPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAAEWDVQHPIPGPLPAGQLREPRGSDIAGTTSTVEEQIQWMFRPQNPVPVGNIYRRWIQIGLQKCVRMY

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Active Site Remodelling Switches HIV Specificity of Antiretroviral Trimcyp pubmed doi rcsb
molecule keywords	GAG POLYPROTEIN
molecule tags	Viral protein
source organism	Human immunodeficiency virus type 2 (isolate d194)
total genus	51
structure length	144
sequence length	144
ec nomenclature
pdb deposition date	2009-06-26

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.375.10	Mainly Alpha	Orthogonal Bundle	Human Immunodeficiency Virus Type 1 Capsid Protein	Human Immunodeficiency Virus Type 1 Capsid Protein	2wlvA00

2PXRC 1M9FC 4J93A 2WLVB 2JPRA 4XFXA 2PWMA 1M9EC 2XGYA 4U0FA 4QNBA 1M9CC 2PWOA 2EIAA 3MGEA 4DGEC 3BP9A 2XGVA 2XDEA 2Y4ZA 4XRQA 1P7NA 1EM9A 4HTWA 5HGNA 2GONA 4E92A 4LQWC 2X83A 1D1DA 5JPAA 4PH2A 2M8NA 1GWPA 4U0CA 2KGFA 2V4XA 5HGMA 2LF4A 4U0DA 4INBA 2WLVA 1M9YC 2XGUA 4XROA 4WYMA 1G03A 4DGAC 3H4EA 1L6NA 1AFVA 2M8LA 3H47A 5HGLA 1EIAA 3P05A 4NX4C 5HGOA 4XFYA 1E6JP 4PH3A 1M9XC 2X82A 4XFZA 1M9DC 1QRJA 4B4NA 4U0EA 1U7KA 4U0BA 2M8PA 2GOLB 3NTEA 5HGKA 2X2DD 1AK4C 4PH0A 4E91A 4U0AA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2PXR C;  1M9F C;  4J93 A;  2WLV B;  2JPR A;  4XFX A;  2PWM A;  1M9E C;  2XGY A;  4U0F A;  4QNB A;  1M9C C;  2PWO A;  2EIA A;  3MGE A;  4DGE C;  3BP9 A;  2XGV A;  2XDE A;  2Y4Z A;  4XRQ A;  1P7N A;  1EM9 A;  4HTW A;  5HGN A;  2GON A;  4E92 A;  4LQW C;  2X83 A;  1D1D A;  5JPA A;  4PH2 A;  2M8N A;  1GWP A;  4U0C A;  2KGF A;  2V4X A;  5HGM A;  2LF4 A;  4U0D A;  4INB A;  2WLV A;  1M9Y C;  2XGU A;  4XRO A;  4WYM A;  1G03 A;  4DGA C;  3H4E A;  1L6N A;  1AFV A;  2M8L A;  3H47 A;  5HGL A;  1EIA A;  3P05 A;  4NX4 C;  5HGO A;  4XFY A;  1E6J P;  4PH3 A;  1M9X C;  2X82 A;  4XFZ A;  1M9D C;  1QRJ A;  4B4N A;  4U0E A;  1U7K A;  4U0B A;  2M8P A;  2GOL B;  3NTE A;  5HGK A;  2X2D D;  1AK4 C;  4PH0 A;  4E91 A;  4U0A A; 
#chains in the Genus database with same CATH topology
 2PXR C;  1M9F C;  4J93 A;  2WLV B;  2JPR A;  4XFX A;  2PWM A;  1M9E C;  2XGY A;  4U0F A;  4QNB A;  1M9C C;  2PWO A;  2EIA A;  3MGE A;  4DGE C;  3BP9 A;  2XGV A;  2XDE A;  2Y4Z A;  4XRQ A;  1P7N A;  1EM9 A;  4HTW A;  5HGN A;  2GON A;  4E92 A;  4LQW C;  2X83 A;  1D1D A;  5JPA A;  4PH2 A;  2M8N A;  1GWP A;  4U0C A;  2KGF A;  2V4X A;  5HGM A;  2LF4 A;  4U0D A;  4INB A;  2WLV A;  1M9Y C;  2XGU A;  4XRO A;  4WYM A;  1G03 A;  4DGA C;  3H4E A;  1L6N A;  1AFV A;  2M8L A;  3H47 A;  5HGL A;  1EIA A;  3P05 A;  4NX4 C;  5HGO A;  4XFY A;  1E6J P;  4PH3 A;  1M9X C;  2X82 A;  4XFZ A;  1M9D C;  1QRJ A;  4B4N A;  4U0E A;  1U7K A;  4U0B A;  2M8P A;  2GOL B;  3NTE A;  5HGK A;  2X2D D;  1AK4 C;  4PH0 A;  4E91 A;  4U0A A; 
#chains in the Genus database with same CATH homology
 2PXR C;  1M9F C;  4J93 A;  2WLV B;  2JPR A;  4XFX A;  2PWM A;  1M9E C;  2XGY A;  4U0F A;  4QNB A;  1M9C C;  2PWO A;  2EIA A;  3MGE A;  4DGE C;  3BP9 A;  2XGV A;  2XDE A;  2Y4Z A;  4XRQ A;  1P7N A;  1EM9 A;  4HTW A;  5HGN A;  2GON A;  4E92 A;  4LQW C;  2X83 A;  1D1D A;  5JPA A;  4PH2 A;  2M8N A;  1GWP A;  4U0C A;  2KGF A;  2V4X A;  5HGM A;  2LF4 A;  4U0D A;  4INB A;  2WLV A;  1M9Y C;  2XGU A;  4XRO A;  4WYM A;  1G03 A;  4DGA C;  3H4E A;  1L6N A;  1AFV A;  2M8L A;  3H47 A;  5HGL A;  1EIA A;  3P05 A;  4NX4 C;  5HGO A;  4XFY A;  1E6J P;  4PH3 A;  1M9X C;  2X82 A;  4XFZ A;  1M9D C;  1QRJ A;  4B4N A;  4U0E A;  1U7K A;  4U0B A;  2M8P A;  2GOL B;  3NTE A;  5HGK A;  2X2D D;  1AK4 C;  4PH0 A;  4E91 A;  4U0A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2WLVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN