2XGV | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	133
structure length	133
Chain Sequence	PVVNRGQGWAYEPMSTRTVAAWIRQTGEKGLTSPETITYWGLISQDLSSREQVQLLEVVPGLQADKDMLGAYLEERAREWDAQPQQPLPYTSAHIRGLTGDQAFAISAQGREAAQVFRAWITQGLMNLAQLRA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural and Functional Analysis of Prehistoric Lentiviruses Uncovers an Ancient Molecular Interface. pubmed doi rcsb
molecule keywords	PSIV CAPSID N-TERMINAL DOMAIN
molecule tags	Viral protein
source organism	Microcebus murinus
total genus	49
structure length	133
sequence length	133
ec nomenclature
pdb deposition date	2010-06-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.375.10	Mainly Alpha	Orthogonal Bundle	Human Immunodeficiency Virus Type 1 Capsid Protein	Human Immunodeficiency Virus Type 1 Capsid Protein	2xgvA00

4U0BA 4PH3A 4XROA 4U0AA 5HGKA 3BP9A 4DGAC 2GOLB 2V4XA 1AFVA 1P7NA 3NTEA 2X2DD 2Y4ZA 4U0CA 1D1DA 4PH2A 2XGUA 3H4EA 4U0EA 4XFXA 1QRJA 4HTWA 2XDEA 4WYMA 2M8LA 4LQWC 1GWPA 1M9YC 2XGVA 5JPAA 1E6JP 2GONA 2KGFA 2PWMA 2WLVB 1AK4C 2JPRA 1EM9A 4NX4C 4U0DA 4INBA 1M9XC 1U7KA 3H47A 5HGNA 4B4NA 4DGEC 1EIAA 2EIAA 2X82A 4E92A 2WLVA 1M9FC 4J93A 4XRQA 3P05A 4QNBA 2M8NA 2PWOA 5HGMA 4PH0A 4XFZA 1M9DC 4U0FA 2PXRC 2M8PA 5HGLA 1G03A 1M9CC 2XGYA 2X83A 4E91A 4XFYA 1L6NA 3MGEA 5HGOA 1M9EC 2LF4A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4U0B A;  4PH3 A;  4XRO A;  4U0A A;  5HGK A;  3BP9 A;  4DGA C;  2GOL B;  2V4X A;  1AFV A;  1P7N A;  3NTE A;  2X2D D;  2Y4Z A;  4U0C A;  1D1D A;  4PH2 A;  2XGU A;  3H4E A;  4U0E A;  4XFX A;  1QRJ A;  4HTW A;  2XDE A;  4WYM A;  2M8L A;  4LQW C;  1GWP A;  1M9Y C;  2XGV A;  5JPA A;  1E6J P;  2GON A;  2KGF A;  2PWM A;  2WLV B;  1AK4 C;  2JPR A;  1EM9 A;  4NX4 C;  4U0D A;  4INB A;  1M9X C;  1U7K A;  3H47 A;  5HGN A;  4B4N A;  4DGE C;  1EIA A;  2EIA A;  2X82 A;  4E92 A;  2WLV A;  1M9F C;  4J93 A;  4XRQ A;  3P05 A;  4QNB A;  2M8N A;  2PWO A;  5HGM A;  4PH0 A;  4XFZ A;  1M9D C;  4U0F A;  2PXR C;  2M8P A;  5HGL A;  1G03 A;  1M9C C;  2XGY A;  2X83 A;  4E91 A;  4XFY A;  1L6N A;  3MGE A;  5HGO A;  1M9E C;  2LF4 A; 
#chains in the Genus database with same CATH topology
 4U0B A;  4PH3 A;  4XRO A;  4U0A A;  5HGK A;  3BP9 A;  4DGA C;  2GOL B;  2V4X A;  1AFV A;  1P7N A;  3NTE A;  2X2D D;  2Y4Z A;  4U0C A;  1D1D A;  4PH2 A;  2XGU A;  3H4E A;  4U0E A;  4XFX A;  1QRJ A;  4HTW A;  2XDE A;  4WYM A;  2M8L A;  4LQW C;  1GWP A;  1M9Y C;  2XGV A;  5JPA A;  1E6J P;  2GON A;  2KGF A;  2PWM A;  2WLV B;  1AK4 C;  2JPR A;  1EM9 A;  4NX4 C;  4U0D A;  4INB A;  1M9X C;  1U7K A;  3H47 A;  5HGN A;  4B4N A;  4DGE C;  1EIA A;  2EIA A;  2X82 A;  4E92 A;  2WLV A;  1M9F C;  4J93 A;  4XRQ A;  3P05 A;  4QNB A;  2M8N A;  2PWO A;  5HGM A;  4PH0 A;  4XFZ A;  1M9D C;  4U0F A;  2PXR C;  2M8P A;  5HGL A;  1G03 A;  1M9C C;  2XGY A;  2X83 A;  4E91 A;  4XFY A;  1L6N A;  3MGE A;  5HGO A;  1M9E C;  2LF4 A; 
#chains in the Genus database with same CATH homology
 4U0B A;  4PH3 A;  4XRO A;  4U0A A;  5HGK A;  3BP9 A;  4DGA C;  2GOL B;  2V4X A;  1AFV A;  1P7N A;  3NTE A;  2X2D D;  2Y4Z A;  4U0C A;  1D1D A;  4PH2 A;  2XGU A;  3H4E A;  4U0E A;  4XFX A;  1QRJ A;  4HTW A;  2XDE A;  4WYM A;  2M8L A;  4LQW C;  1GWP A;  1M9Y C;  2XGV A;  5JPA A;  1E6J P;  2GON A;  2KGF A;  2PWM A;  2WLV B;  1AK4 C;  2JPR A;  1EM9 A;  4NX4 C;  4U0D A;  4INB A;  1M9X C;  1U7K A;  3H47 A;  5HGN A;  4B4N A;  4DGE C;  1EIA A;  2EIA A;  2X82 A;  4E92 A;  2WLV A;  1M9F C;  4J93 A;  4XRQ A;  3P05 A;  4QNB A;  2M8N A;  2PWO A;  5HGM A;  4PH0 A;  4XFZ A;  1M9D C;  4U0F A;  2PXR C;  2M8P A;  5HGL A;  1G03 A;  1M9C C;  2XGY A;  2X83 A;  4E91 A;  4XFY A;  1L6N A;  3MGE A;  5HGO A;  1M9E C;  2LF4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2XGVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN