3BP9 | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	131
structure length	131
Chain Sequence	PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of B-MLV capsid amino-terminal domain reveals key features of viral tropism, gag assembly and core formation pubmed doi rcsb
molecule keywords	Gag protein
molecule tags	Viral protein
source organism	Murine leukemia virus
total genus	39
structure length	131
sequence length	131
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, X, Y
ec nomenclature
pdb deposition date	2007-12-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.375.10	Mainly Alpha	Orthogonal Bundle	Human Immunodeficiency Virus Type 1 Capsid Protein	Human Immunodeficiency Virus Type 1 Capsid Protein	3bp9A00

2XGVA 4DGAC 4XRQA 4E91A 4U0FA 1M9EC 4U0DA 2X82A 1M9DC 4XFZA 3H47A 2XGUA 2XGYA 4U0BA 4U0CA 3MGEA 2PWOA 1M9YC 4U0AA 2PXRC 2WLVA 1U7KA 1M9CC 4XROA 2XDEA 2Y4ZA 2M8LA 3P05A 2JPRA 4U0EA 4XFXA 4PH2A 4QNBA 1AK4C 2X83A 1GWPA 4DGEC 1L6NA 1QRJA 4HTWA 2M8PA 4PH3A 1EIAA 2X2DD 1G03A 4E92A 4PH0A 2V4XA 4INBA 1AFVA 3H4EA 5HGNA 5HGOA 1M9FC 5HGLA 4LQWC 1EM9A 2KGFA 2GOLB 2LF4A 2M8NA 1P7NA 2GONA 2WLVB 3NTEA 4WYMA 5JPAA 1M9XC 2PWMA 4J93A 4XFYA 5HGMA 1D1DA 5HGKA 4NX4C 3BP9A 2EIAA 4B4NA 1E6JP
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2XGV A;  4DGA C;  4XRQ A;  4E91 A;  4U0F A;  1M9E C;  4U0D A;  2X82 A;  1M9D C;  4XFZ A;  3H47 A;  2XGU A;  2XGY A;  4U0B A;  4U0C A;  3MGE A;  2PWO A;  1M9Y C;  4U0A A;  2PXR C;  2WLV A;  1U7K A;  1M9C C;  4XRO A;  2XDE A;  2Y4Z A;  2M8L A;  3P05 A;  2JPR A;  4U0E A;  4XFX A;  4PH2 A;  4QNB A;  1AK4 C;  2X83 A;  1GWP A;  4DGE C;  1L6N A;  1QRJ A;  4HTW A;  2M8P A;  4PH3 A;  1EIA A;  2X2D D;  1G03 A;  4E92 A;  4PH0 A;  2V4X A;  4INB A;  1AFV A;  3H4E A;  5HGN A;  5HGO A;  1M9F C;  5HGL A;  4LQW C;  1EM9 A;  2KGF A;  2GOL B;  2LF4 A;  2M8N A;  1P7N A;  2GON A;  2WLV B;  3NTE A;  4WYM A;  5JPA A;  1M9X C;  2PWM A;  4J93 A;  4XFY A;  5HGM A;  1D1D A;  5HGK A;  4NX4 C;  3BP9 A;  2EIA A;  4B4N A;  1E6J P; 
#chains in the Genus database with same CATH topology
 2XGV A;  4DGA C;  4XRQ A;  4E91 A;  4U0F A;  1M9E C;  4U0D A;  2X82 A;  1M9D C;  4XFZ A;  3H47 A;  2XGU A;  2XGY A;  4U0B A;  4U0C A;  3MGE A;  2PWO A;  1M9Y C;  4U0A A;  2PXR C;  2WLV A;  1U7K A;  1M9C C;  4XRO A;  2XDE A;  2Y4Z A;  2M8L A;  3P05 A;  2JPR A;  4U0E A;  4XFX A;  4PH2 A;  4QNB A;  1AK4 C;  2X83 A;  1GWP A;  4DGE C;  1L6N A;  1QRJ A;  4HTW A;  2M8P A;  4PH3 A;  1EIA A;  2X2D D;  1G03 A;  4E92 A;  4PH0 A;  2V4X A;  4INB A;  1AFV A;  3H4E A;  5HGN A;  5HGO A;  1M9F C;  5HGL A;  4LQW C;  1EM9 A;  2KGF A;  2GOL B;  2LF4 A;  2M8N A;  1P7N A;  2GON A;  2WLV B;  3NTE A;  4WYM A;  5JPA A;  1M9X C;  2PWM A;  4J93 A;  4XFY A;  5HGM A;  1D1D A;  5HGK A;  4NX4 C;  3BP9 A;  2EIA A;  4B4N A;  1E6J P; 
#chains in the Genus database with same CATH homology
 2XGV A;  4DGA C;  4XRQ A;  4E91 A;  4U0F A;  1M9E C;  4U0D A;  2X82 A;  1M9D C;  4XFZ A;  3H47 A;  2XGU A;  2XGY A;  4U0B A;  4U0C A;  3MGE A;  2PWO A;  1M9Y C;  4U0A A;  2PXR C;  2WLV A;  1U7K A;  1M9C C;  4XRO A;  2XDE A;  2Y4Z A;  2M8L A;  3P05 A;  2JPR A;  4U0E A;  4XFX A;  4PH2 A;  4QNB A;  1AK4 C;  2X83 A;  1GWP A;  4DGE C;  1L6N A;  1QRJ A;  4HTW A;  2M8P A;  4PH3 A;  1EIA A;  2X2D D;  1G03 A;  4E92 A;  4PH0 A;  2V4X A;  4INB A;  1AFV A;  3H4E A;  5HGN A;  5HGO A;  1M9F C;  5HGL A;  4LQW C;  1EM9 A;  2KGF A;  2GOL B;  2LF4 A;  2M8N A;  1P7N A;  2GON A;  2WLV B;  3NTE A;  4WYM A;  5JPA A;  1M9X C;  2PWM A;  4J93 A;  4XFY A;  5HGM A;  1D1D A;  5HGK A;  4NX4 C;  3BP9 A;  2EIA A;  4B4N A;  1E6J P;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BP9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN