3BS6 | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	271
structure length	258
Chain Sequence	KLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein, protein transport
source organism	Escherichia coli
publication title	The Crystal Structure of the Periplasmic Domain of the Escherichia coli Membrane Protein Insertase YidC Contains a Substrate Binding Cleft pubmed doi rcsb
molecule keywords	Inner membrane protein oxaA
total genus	57
structure length	258
sequence length	271
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-12-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.98.90	Mainly Beta	Distorted Sandwich	Beta-galactosidase; Chain A, domain 5	Beta-galactosidase; Chain A, domain 5	3bs6A00

3WVFA 3BLCA 3BS6A
chains in the Genus database with same CATH superfamily

1RWHA 1RKYA 1V7VA 1K1XA 3DYMA 1NSVA 4BTXA 1HWWA 3AMOB 2CFLA 2OQEA 4NEIA 3OBAA 1OJNA 2PNCA 3S4AA 3W7UA 3IAPA 1CB8A 3VSNA 1HXKA 1LF9A 3BUQA 1LVNA 3D52A 3SEPA 3HIIA 3X3YA 1N7PA 1IVUA 3MI6A 1LURA 2D1WA 1IU7A 3BVXA 3WA3A 2WW1A 1I8QA 2CQSA 2E2VA 2OOVA 1L7KA 3SXXA 3MV01 1OJMA 2WW2A 4OK2A 3QDEA 1JOVA 1JZ8A 3ACSA 3BUIA 1PX3A 3EJQA 2HTBA 2OQEC 3X40A 2CFKA 3VD7A 2CISA 2C10A 1US1A 1DYUA 3D50A 4AQ0A 3MV11 3T2OA 2C11A 4FNTA 1NS4A 1X1IA 3EJRA 3EJUA 3WVFA 3D51A 5A1AA 1TXKA 2HTAA 5JMFA 1H54A 3CV5A 3VD4A 2WYHA 3BUPA 1HN1A 1MMUA 3DX1A 1SPUA 2WDAA 1TQSA 3DCDA 1JRQA 2XN2A 5CA3A 2W0QA 4BZEA 2CG0A 1MMZA 3EJSA 2BRVX 1NS8A 3T0BA 1QWNA 1PS3A 5E1QA 4DUWA 2OW7A 3ALAA 3E7JA 1SO0A 2XN1A 3QFZA 1RJOA 1W6GA 1L7JA 1N7QA 1J0MA 1C82A 3DX0A 2Y74A 4FNVA 1IQXA 2Q1FA 2XHNA 2WW0A 3AFLA 1QWUA 3I3EA 4FNUA 3NBBA 1IVVA 1EGUA 3AFJA 1J0NA 3N9HA 1F4AA 2ZXQA 2WGQA 2CWUA 1YGAA 2WVXA 3MUZ1 3T2PA 2WW3A 3SX1A 1LF6A 3X3XA 1WMNA 2ZL8A 1LXMA 1HMUA 1TU5A 3VDBA 2F7PA 3IMHA 2CWTA 2BRWA 1JZ2A 1N7NA 1NSRA 1HTYA 1JZ5A 3IAQA 3A24A 3NBJA 4KFDA 3MPHA 1R33A 1K1YA 1W5ZA 1F1SA 1QAFA 2CFWA 4DUXA 4BZHA 4FNPA 1SNZA 2CFGA 2OW6A 2F1AA 2XSGA 4OK4A 2WO0A 3CZJA 1MMXA 2EAEA 3HIGA 1JYWA 3K25A 4RNLA 3T0UA 1OACA 1N7RA 3BLCA 4K35A 3CZSA 5JMDA 3ACTA 2E24A 1LOHA 3RSYA 1NKGA 1WMOA 2F18A 1UI7A 4KFFA 1D6ZA 1WMPA 2CIQA 3QG0A 2OOVC 3W7SA 3ECQA 1HN0A 2E22A 1V7XA 2WOHA 1JZ6A 2EADA 2BT3A 4DUVA 1W7CA 3NJXA 3PGBA 3E1F1 4BTYA 3S4CA 2WCOA 3BVUA 1KSIA 1OJOA 2WYIA 1IQYA 1OJPA 1SIIA 4TTGA 3X41A 1N9EA 3X3ZA 1NSXA 3HI7A 1NSMA 1D6UA 1PX4A 2CG1A 1HM3A 3W7TA 3BUBA 1W2ZA 1V7WA 1R34A 4MMHA 1RWCA 1Z45A 4KTRA 2F1BA 1JYVA 3MWXA 3BLBA 3DX4A 3LVTA 1NSSA 1TQWA 2F7QA 1K1WA 1W4NA 3Q1NA 3T08A 3X42A 2FUTA 3D3IA 2WOFA 5KBPA 1RWGA 1MN0A 3J7HA 2F7OA 4J5TA 3T09A 1QALA 1NS7A 3T0AA 3VDCA 1X1JA 4FNRA 2JKPA 1F9GA 1HMWA 3DYOA 3DYPA 3DDFA 1DP0A 1RWFA 3BGAA 2D73A 2E2TA 1NS2A 2YFNA 3WFAA 4KTPA 1YQ2A 1NS0A 3WA2X 2ALWA 2WVZA 2Y73A 2X03A 4BTWA 1MMYA 3D4ZA 4KFEA 1IVXA 3KN4A 2XN0A 3BVWA 1AVLA 1UG9A 3OS7A 3LOYA 1F4HA 2CIRA 3VSMA 3K5TA 1D6YA 1JZ3A 4FNQA 3RRSA 1W6CA 3OB8A 2WVXB 1A2VA 1JZ4A 3WIRA 1TQTA 1TQVA 1EKMA 1JYXA 3NJVA 3KIIA 3I3DA 4BZGA 3BUDA 1HM2A 3BS6A 1RW9A 1TQUA 3EJPA 3VD9A 1QAKA 3VD5A 3AMOA 2FUQA 1QX1A 2F7RA 3DECA 2BRPA 3E80A 3T0DA 4EV5A 1JZ7A 3TY1A 4MMIA 1RWAA 1NSUA 1IVWA 4UFCA 3QFYA 3DX2A 3VD3A 1N7OA 1UI8A 1AVKA 3EJTA 4K3AA 2CWVA 2YFOA 1PU4A 2YX9A 1NSZA 3I3BA 3NREA 3S4DA 1JYNA 1ULVA 2RDYA 5GW7A 2EACA 2WZSA 2JKAA 2CQTA 2FYVA 2CFDA 2EABA 1SIHA 3A0OA 4OJZA 1W3YA 2ZQ0A 3S4BA 3CZNA 1LXKA 3WIQA 2E2UA 2JKEA 1O7DD 3DX3A 3BVVA 3W7XA 3W7WA 2WVYA 4BZFA 3D4YA 3VDAA 3MUY1 3T2QA 1X1HA 4EV2A 4FNSA 3DDGA 1AV4A 3BVTA
chains in the Genus database with same CATH topology

1J0MA 1RWHA 1C82A 2WCOA 1K1XA 3DYMA 1NSVA 1OJOA 1UG9A 1OJPA 3OS7A 4FNVA 2Q1FA 2XHNA 1F4HA 2CIRA 3VSMA 4NEIA 3OBAA 1OJNA 2WW0A 3IAPA 4TTGA 1CB8A 3VSNA 1LF9A 3AFLA 1JZ3A 3I3EA 1NSXA 3SEPA 1EGUA 1NSMA 1J0NA 1PX4A 1F4AA 1N7PA 2ZXQA 1HM3A 3OB8A 1LURA 2WVXB 2WW1A 1I8QA 4MMHA 1JZ4A 1RWCA 1YGAA 2WVXA 3MUZ1 3T2PA 1JYXA 3NJVA 2WW3A 1Z45A 3I3DA 4BZGA 1L7KA 1HM2A 1JYVA 3BS6A 3MV01 1OJMA 3MWXA 1RW9A 1LF6A 2WW2A 4OK2A 3VD9A 1JOVA 1JZ8A 1NSSA 1LXMA 1HMUA 1PX3A 3VD5A 3VDBA 3IMHA 1K1WA 2FUQA 2BRWA 1JZ2A 2HTBA 1N7NA 1NSRA 3DECA 2BRPA 3Q1NA 3T08A 1JZ5A 3E80A 3T0DA 3IAQA 3VD7A 3A24A 2FUTA 2CISA 1JZ7A 1RWGA 1MN0A 3J7HA 3TY1A 1K1YA 4AQ0A 4MMIA 1RWAA 1NSUA 3MV11 4J5TA 1F1SA 3T2OA 3VD3A 3T09A 1NS7A 3T0AA 3VDCA 1X1JA 1NS4A 4DUXA 1N7OA 4BZHA 1SNZA 1X1IA 2JKPA 2XSGA 4OK4A 1F9GA 1HMWA 3DYOA 3CZJA 3DYPA 1MMXA 1NSZA 3I3BA 3WVFA 3NREA 5A1AA 1TXKA 1JYWA 1JYNA 3K25A 1ULVA 2HTAA 1DP0A 5JMFA 4RNLA 1RWFA 3BGAA 2WZSA 2JKAA 1N7RA 3VD4A 2D73A 1HN1A 3A0OA 3BLCA 4OJZA 5JMDA 1W3YA 2ZQ0A 1NS2A 1LXKA 1MMUA 2WDAA 3WFAA 2E24A 1LOHA 1YQ2A 3DCDA 1NKGA 2JKEA 1NS0A 4BZEA 2CIQA 1MMZA 2WVYA 2BRVX 2WVZA 1NS8A 4BZFA 3ECQA 3T0BA 1HN0A 2E22A 3VDAA 2X03A 1JZ6A 3MUY1 5E1QA 3T2QA 1X1HA 4DUWA 4DUVA 1MMYA 3E7JA 1SO0A 3NJXA 3E1F1 1L7JA 1N7QA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3WVF A;  3BLC A;  3BS6 A; 
#chains in the Genus database with same CATH topology
 1RWH A;  1RKY A;  1V7V A;  1K1X A;  3DYM A;  1NSV A;  4BTX A;  1HWW A;  3AMO B;  2CFL A;  2OQE A;  4NEI A;  3OBA A;  1OJN A;  2PNC A;  3S4A A;  3W7U A;  3IAP A;  1CB8 A;  3VSN A;  1HXK A;  1LF9 A;  3BUQ A;  1LVN A;  3D52 A;  3SEP A;  3HII A;  3X3Y A;  1N7P A;  1IVU A;  3MI6 A;  1LUR A;  2D1W A;  1IU7 A;  3BVX A;  3WA3 A;  2WW1 A;  1I8Q A;  2CQS A;  2E2V A;  2OOV A;  1L7K A;  3SXX A;  3MV0 1;  1OJM A;  2WW2 A;  4OK2 A;  3QDE A;  1JOV A;  1JZ8 A;  3ACS A;  3BUI A;  1PX3 A;  3EJQ A;  2HTB A;  2OQE C;  3X40 A;  2CFK A;  3VD7 A;  2CIS A;  2C10 A;  1US1 A;  1DYU A;  3D50 A;  4AQ0 A;  3MV1 1;  3T2O A;  2C11 A;  4FNT A;  1NS4 A;  1X1I A;  3EJR A;  3EJU A;  3WVF A;  3D51 A;  5A1A A;  1TXK A;  2HTA A;  5JMF A;  1H54 A;  3CV5 A;  3VD4 A;  2WYH A;  3BUP A;  1HN1 A;  1MMU A;  3DX1 A;  1SPU A;  2WDA A;  1TQS A;  3DCD A;  1JRQ A;  2XN2 A;  5CA3 A;  2W0Q A;  4BZE A;  2CG0 A;  1MMZ A;  3EJS A;  2BRV X;  1NS8 A;  3T0B A;  1QWN A;  1PS3 A;  5E1Q A;  4DUW A;  2OW7 A;  3ALA A;  3E7J A;  1SO0 A;  2XN1 A;  3QFZ A;  1RJO A;  1W6G A;  1L7J A;  1N7Q A;  1J0M A;  1C82 A;  3DX0 A;  2Y74 A;  4FNV A;  1IQX A;  2Q1F A;  2XHN A;  2WW0 A;  3AFL A;  1QWU A;  3I3E A;  4FNU A;  3NBB A;  1IVV A;  1EGU A;  3AFJ A;  1J0N A;  3N9H A;  1F4A A;  2ZXQ A;  2WGQ A;  2CWU A;  1YGA A;  2WVX A;  3MUZ 1;  3T2P A;  2WW3 A;  3SX1 A;  1LF6 A;  3X3X A;  1WMN A;  2ZL8 A;  1LXM A;  1HMU A;  1TU5 A;  3VDB A;  2F7P A;  3IMH A;  2CWT A;  2BRW A;  1JZ2 A;  1N7N A;  1NSR A;  1HTY A;  1JZ5 A;  3IAQ A;  3A24 A;  3NBJ A;  4KFD A;  3MPH A;  1R33 A;  1K1Y A;  1W5Z A;  1F1S A;  1QAF A;  2CFW A;  4DUX A;  4BZH A;  4FNP A;  1SNZ A;  2CFG A;  2OW6 A;  2F1A A;  2XSG A;  4OK4 A;  2WO0 A;  3CZJ A;  1MMX A;  2EAE A;  3HIG A;  1JYW A;  3K25 A;  4RNL A;  3T0U A;  1OAC A;  1N7R A;  3BLC A;  4K35 A;  3CZS A;  5JMD A;  3ACT A;  2E24 A;  1LOH A;  3RSY A;  1NKG A;  1WMO A;  2F18 A;  1UI7 A;  4KFF A;  1D6Z A;  1WMP A;  2CIQ A;  3QG0 A;  2OOV C;  3W7S A;  3ECQ A;  1HN0 A;  2E22 A;  1V7X A;  2WOH A;  1JZ6 A;  2EAD A;  2BT3 A;  4DUV A;  1W7C A;  3NJX A;  3PGB A;  3E1F 1;  4BTY A;  3S4C A;  2WCO A;  3BVU A;  1KSI A;  1OJO A;  2WYI A;  1IQY A;  1OJP A;  1SII A;  4TTG A;  3X41 A;  1N9E A;  3X3Z A;  1NSX A;  3HI7 A;  1NSM A;  1D6U A;  1PX4 A;  2CG1 A;  1HM3 A;  3W7T A;  3BUB A;  1W2Z A;  1V7W A;  1R34 A;  4MMH A;  1RWC A;  1Z45 A;  4KTR A;  2F1B A;  1JYV A;  3MWX A;  3BLB A;  3DX4 A;  3LVT A;  1NSS A;  1TQW A;  2F7Q A;  1K1W A;  1W4N A;  3Q1N A;  3T08 A;  3X42 A;  2FUT A;  3D3I A;  2WOF A;  5KBP A;  1RWG A;  1MN0 A;  3J7H A;  2F7O A;  4J5T A;  3T09 A;  1QAL A;  1NS7 A;  3T0A A;  3VDC A;  1X1J A;  4FNR A;  2JKP A;  1F9G A;  1HMW A;  3DYO A;  3DYP A;  3DDF A;  1DP0 A;  1RWF A;  3BGA A;  2D73 A;  2E2T A;  1NS2 A;  2YFN A;  3WFA A;  4KTP A;  1YQ2 A;  1NS0 A;  3WA2 X;  2ALW A;  2WVZ A;  2Y73 A;  2X03 A;  4BTW A;  1MMY A;  3D4Z A;  4KFE A;  1IVX A;  3KN4 A;  2XN0 A;  3BVW A;  1AVL A;  1UG9 A;  3OS7 A;  3LOY A;  1F4H A;  2CIR A;  3VSM A;  3K5T A;  1D6Y A;  1JZ3 A;  4FNQ A;  3RRS A;  1W6C A;  3OB8 A;  2WVX B;  1A2V A;  1JZ4 A;  3WIR A;  1TQT A;  1TQV A;  1EKM A;  1JYX A;  3NJV A;  3KII A;  3I3D A;  4BZG A;  3BUD A;  1HM2 A;  3BS6 A;  1RW9 A;  1TQU A;  3EJP A;  3VD9 A;  1QAK A;  3VD5 A;  3AMO A;  2FUQ A;  1QX1 A;  2F7R A;  3DEC A;  2BRP A;  3E80 A;  3T0D A;  4EV5 A;  1JZ7 A;  3TY1 A;  4MMI A;  1RWA A;  1NSU A;  1IVW A;  4UFC A;  3QFY A;  3DX2 A;  3VD3 A;  1N7O A;  1UI8 A;  1AVK A;  3EJT A;  4K3A A;  2CWV A;  2YFO A;  1PU4 A;  2YX9 A;  1NSZ A;  3I3B A;  3NRE A;  3S4D A;  1JYN A;  1ULV A;  2RDY A;  5GW7 A;  2EAC A;  2WZS A;  2JKA A;  2CQT A;  2FYV A;  2CFD A;  2EAB A;  1SIH A;  3A0O A;  4OJZ A;  1W3Y A;  2ZQ0 A;  3S4B A;  3CZN A;  1LXK A;  3WIQ A;  2E2U A;  2JKE A;  1O7D D;  3DX3 A;  3BVV A;  3W7X A;  3W7W A;  2WVY A;  4BZF A;  3D4Y A;  3VDA A;  3MUY 1;  3T2Q A;  1X1H A;  4EV2 A;  4FNS A;  3DDG A;  1AV4 A;  3BVT A; 
#chains in the Genus database with same CATH homology
 1J0M A;  1RWH A;  1C82 A;  2WCO A;  1K1X A;  3DYM A;  1NSV A;  1OJO A;  1UG9 A;  1OJP A;  3OS7 A;  4FNV A;  2Q1F A;  2XHN A;  1F4H A;  2CIR A;  3VSM A;  4NEI A;  3OBA A;  1OJN A;  2WW0 A;  3IAP A;  4TTG A;  1CB8 A;  3VSN A;  1LF9 A;  3AFL A;  1JZ3 A;  3I3E A;  1NSX A;  3SEP A;  1EGU A;  1NSM A;  1J0N A;  1PX4 A;  1F4A A;  1N7P A;  2ZXQ A;  1HM3 A;  3OB8 A;  1LUR A;  2WVX B;  2WW1 A;  1I8Q A;  4MMH A;  1JZ4 A;  1RWC A;  1YGA A;  2WVX A;  3MUZ 1;  3T2P A;  1JYX A;  3NJV A;  2WW3 A;  1Z45 A;  3I3D A;  4BZG A;  1L7K A;  1HM2 A;  1JYV A;  3BS6 A;  3MV0 1;  1OJM A;  3MWX A;  1RW9 A;  1LF6 A;  2WW2 A;  4OK2 A;  3VD9 A;  1JOV A;  1JZ8 A;  1NSS A;  1LXM A;  1HMU A;  1PX3 A;  3VD5 A;  3VDB A;  3IMH A;  1K1W A;  2FUQ A;  2BRW A;  1JZ2 A;  2HTB A;  1N7N A;  1NSR A;  3DEC A;  2BRP A;  3Q1N A;  3T08 A;  1JZ5 A;  3E80 A;  3T0D A;  3IAQ A;  3VD7 A;  3A24 A;  2FUT A;  2CIS A;  1JZ7 A;  1RWG A;  1MN0 A;  3J7H A;  3TY1 A;  1K1Y A;  4AQ0 A;  4MMI A;  1RWA A;  1NSU A;  3MV1 1;  4J5T A;  1F1S A;  3T2O A;  3VD3 A;  3T09 A;  1NS7 A;  3T0A A;  3VDC A;  1X1J A;  1NS4 A;  4DUX A;  1N7O A;  4BZH A;  1SNZ A;  1X1I A;  2JKP A;  2XSG A;  4OK4 A;  1F9G A;  1HMW A;  3DYO A;  3CZJ A;  3DYP A;  1MMX A;  1NSZ A;  3I3B A;  3WVF A;  3NRE A;  5A1A A;  1TXK A;  1JYW A;  1JYN A;  3K25 A;  1ULV A;  2HTA A;  1DP0 A;  5JMF A;  4RNL A;  1RWF A;  3BGA A;  2WZS A;  2JKA A;  1N7R A;  3VD4 A;  2D73 A;  1HN1 A;  3A0O A;  3BLC A;  4OJZ A;  5JMD A;  1W3Y A;  2ZQ0 A;  1NS2 A;  1LXK A;  1MMU A;  2WDA A;  3WFA A;  2E24 A;  1LOH A;  1YQ2 A;  3DCD A;  1NKG A;  2JKE A;  1NS0 A;  4BZE A;  2CIQ A;  1MMZ A;  2WVY A;  2BRV X;  2WVZ A;  1NS8 A;  4BZF A;  3ECQ A;  3T0B A;  1HN0 A;  2E22 A;  3VDA A;  2X03 A;  1JZ6 A;  3MUY 1;  5E1Q A;  3T2Q A;  1X1H A;  4DUW A;  4DUV A;  1MMY A;  3E7J A;  1SO0 A;  3NJX A;  3E1F 1;  1L7J A;  1N7Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BS6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN