4DGA | Genus

Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	145
structure length	138
Chain Sequence	PIVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRTHPPAMGPLPPGQIREPTGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 138 atoms

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138 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Diverse HIV viruses are targeted by a conformationally dynamic antiviral. pubmed doi rcsb
molecule keywords	TRIMCyp
molecule tags	Isomerase/viral protein
source organism	Macaca mulatta
total genus	48
structure length	138
sequence length	145
chains with identical sequence	D
ec nomenclature	ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date	2012-01-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.375.10	Mainly Alpha	Orthogonal Bundle	Human Immunodeficiency Virus Type 1 Capsid Protein	Human Immunodeficiency Virus Type 1 Capsid Protein	4dgaC00

2X2DD 2M8PA 2KGFA 2LF4A 2M8NA 4LQWC 2X83A 4HTWA 1EM9A 2JPRA 2XDEA 2XGYA 5HGMA 4XFZA 1M9DC 4QNBA 1E6JP 5HGLA 5HGKA 3MGEA 4PH2A 1D1DA 1P7NA 4DGEC 3H4EA 4J93A 2XGUA 2V4XA 3BP9A 4E92A 2Y4ZA 1G03A 2GOLB 4WYMA 1M9EC 2M8LA 4INBA 4PH0A 1AFVA 5HGOA 5JPAA 2XGVA 4E91A 4DGAC 3H47A 4XROA 2WLVB 1QRJA 3NTEA 3P05A 2PXRC 5HGNA 1L6NA 4U0FA 2WLVA 1M9FC 1M9CC 2PWOA 4B4NA 1M9XC 4U0BA 4U0AA 1EIAA 1M9YC 4U0DA 4U0CA 1AK4C 2PWMA 1U7KA 4U0EA 4NX4C 4XFYA 2EIAA 2X82A 4XFXA 4PH3A 1GWPA 2GONA 4XRQA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2X2D D;  2M8P A;  2KGF A;  2LF4 A;  2M8N A;  4LQW C;  2X83 A;  4HTW A;  1EM9 A;  2JPR A;  2XDE A;  2XGY A;  5HGM A;  4XFZ A;  1M9D C;  4QNB A;  1E6J P;  5HGL A;  5HGK A;  3MGE A;  4PH2 A;  1D1D A;  1P7N A;  4DGE C;  3H4E A;  4J93 A;  2XGU A;  2V4X A;  3BP9 A;  4E92 A;  2Y4Z A;  1G03 A;  2GOL B;  4WYM A;  1M9E C;  2M8L A;  4INB A;  4PH0 A;  1AFV A;  5HGO A;  5JPA A;  2XGV A;  4E91 A;  4DGA C;  3H47 A;  4XRO A;  2WLV B;  1QRJ A;  3NTE A;  3P05 A;  2PXR C;  5HGN A;  1L6N A;  4U0F A;  2WLV A;  1M9F C;  1M9C C;  2PWO A;  4B4N A;  1M9X C;  4U0B A;  4U0A A;  1EIA A;  1M9Y C;  4U0D A;  4U0C A;  1AK4 C;  2PWM A;  1U7K A;  4U0E A;  4NX4 C;  4XFY A;  2EIA A;  2X82 A;  4XFX A;  4PH3 A;  1GWP A;  2GON A;  4XRQ A; 
#chains in the Genus database with same CATH topology
 2X2D D;  2M8P A;  2KGF A;  2LF4 A;  2M8N A;  4LQW C;  2X83 A;  4HTW A;  1EM9 A;  2JPR A;  2XDE A;  2XGY A;  5HGM A;  4XFZ A;  1M9D C;  4QNB A;  1E6J P;  5HGL A;  5HGK A;  3MGE A;  4PH2 A;  1D1D A;  1P7N A;  4DGE C;  3H4E A;  4J93 A;  2XGU A;  2V4X A;  3BP9 A;  4E92 A;  2Y4Z A;  1G03 A;  2GOL B;  4WYM A;  1M9E C;  2M8L A;  4INB A;  4PH0 A;  1AFV A;  5HGO A;  5JPA A;  2XGV A;  4E91 A;  4DGA C;  3H47 A;  4XRO A;  2WLV B;  1QRJ A;  3NTE A;  3P05 A;  2PXR C;  5HGN A;  1L6N A;  4U0F A;  2WLV A;  1M9F C;  1M9C C;  2PWO A;  4B4N A;  1M9X C;  4U0B A;  4U0A A;  1EIA A;  1M9Y C;  4U0D A;  4U0C A;  1AK4 C;  2PWM A;  1U7K A;  4U0E A;  4NX4 C;  4XFY A;  2EIA A;  2X82 A;  4XFX A;  4PH3 A;  1GWP A;  2GON A;  4XRQ A; 
#chains in the Genus database with same CATH homology
 2X2D D;  2M8P A;  2KGF A;  2LF4 A;  2M8N A;  4LQW C;  2X83 A;  4HTW A;  1EM9 A;  2JPR A;  2XDE A;  2XGY A;  5HGM A;  4XFZ A;  1M9D C;  4QNB A;  1E6J P;  5HGL A;  5HGK A;  3MGE A;  4PH2 A;  1D1D A;  1P7N A;  4DGE C;  3H4E A;  4J93 A;  2XGU A;  2V4X A;  3BP9 A;  4E92 A;  2Y4Z A;  1G03 A;  2GOL B;  4WYM A;  1M9E C;  2M8L A;  4INB A;  4PH0 A;  1AFV A;  5HGO A;  5JPA A;  2XGV A;  4E91 A;  4DGA C;  3H47 A;  4XRO A;  2WLV B;  1QRJ A;  3NTE A;  3P05 A;  2PXR C;  5HGN A;  1L6N A;  4U0F A;  2WLV A;  1M9F C;  1M9C C;  2PWO A;  4B4N A;  1M9X C;  4U0B A;  4U0A A;  1EIA A;  1M9Y C;  4U0D A;  4U0C A;  1AK4 C;  2PWM A;  1U7K A;  4U0E A;  4NX4 C;  4XFY A;  2EIA A;  2X82 A;  4XFX A;  4PH3 A;  1GWP A;  2GON A;  4XRQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DGAC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN