4IUAA

Crystal structure of the nk2 fragment (31-290) of the mouse hepatocyte growth factor/scatter factor
Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
254
structure length
254
Chain Sequence
RNTLHEFKKSAKTTLTKEDPLLKIKTKKVNSADECANRCIRNRGFTFTCKAFVFDKSRKRCYWYPFNSMSSGVKKGFGHEFDLYENKDYIRNCIIGKGGSYKGTVSITKSGIKCQPWNSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEVECMTANGESYRGPMDHTESGKTCQRWDQQTPHRHKFLPERYPDKGFDDNYCRNPDGKPRPWCYTLDPDTPWEYCAIKTCA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO9 (212-289)TII1 (78-81)S1 (43-47)3H1 (40-42)TIV1 (46-49)S2 (62-64)TIV2 (55-58)AH1 (68-77)O4 (71-97)S3 (87-91)S4 (96-100)TI1 (92-95)TII2 (168-171)TI2 (103-106)O6 (129-207)TI3 (114-117)O1 (162-164)TIV4 (106-109)TVIb1 (156-159)3H2 (123-125)TI6 (152-155)S5 (117-122)TI4 (134-137)TII'1 (131-134)TI5 (144-147)3H3 (165-167)TVIII1 (157-160)TIV6 (174-177)TI14 (251-254)TIV5 (169-172)TI8 (184-187)TI7 (180-183)TI12 (227-230)TII'2 (214-217)S6 (189-191)3H4 (248-250)O2 (245-247)TIV7 (194-197)TVIb2 (239-242)TVIII2 (195-198)TI9 (206-209)TI13 (235-238)S7 (199-201)TI10 (207-210)TIV8 (209-212)TI11 (217-220)TVIII3 (240-243)TIV3 (91-94)Updating...
connected with : NaN
molecule tags Hormone
source organism Mus musculus
publication title Crystal Structure of the NK2 Fragment of the mouse Hepatocyte Growth Factor/Scatter Factor
rcsb
molecule keywords Hepatocyte growth factor
total genus 62
structure length 254
sequence length 254
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2013-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 4iuaA02
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 4iuaA03
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4iuaA01
2QJ2A 1JFNA 3HN4A 1W8KA 3KIVA 3BT1A 5CS9A 2J8JA 4R1CA 4BV5A 1URKA 4Z09A 2FEBA 4O03A 3HMTA 1PK2A 1I5KA 4D3CA 4Z0DA 2KNFA 2YILA 2Z8WA 2HPQP 5COEA 2LL4M 4R1BA 3E6PL 2YIPA 1Z40A 2Q8AA 3SRIA 1CEAA 1PKRA 3ZWZA 2J8LA 1GMNA 4HZHA 3HMSA 2Z8VA 2DOHX 5CS1A 1I8NA 1PK4A 1KIVA 1KI0A 2I9AA 5HPGA 3SP8A 1YXEA 5CT3A 2PK4A 1HPKA 4DURA 4BVCA 1PMKA 1A0HA 1NL1A 2HGFA 2Q8BA 3SRJA 1GMOA 5CT2A 4BV7A 5CT1A 5CSQA 3U73A 2I9BA 1NL2A 4UV6A 5I25A 4BVWA 2LL3A 1KRNA 2HPPP 5CS3A 2SPTA 2Y8RA 4UAOA 1NK1A 2X2ZA 1I71A 1TPKA 2F83A 3HMRA 1PMLA 1HPJA 4IUAA 2PF2A 4NZQA 3ZLEA 2PF1A 4Z0FA 4CIKA 4A5TS 5EOKA 2K51A 4R1AA 3NXPA 2YIOA 2DOIA 4Z0EA 2FD6A 2K13X 3MKPA 1B2IA 1W81A 4BVDA 2KJ4A 4APMA 3LAQA 3K65A 4APLA 1GP9A 1KDUA 2L0SA 3BT2A 4BVVA 4KIVA 1HKYA 4R19A 2K4RA 2QJ4A 1CEBA 5EODA 5CP9A 1BHTA 5CS5A
chains in the Genus database with same CATH superfamily
2QJ2A 1JFNA 3HN4A 1W8KA 3KIVA 3BT1A 5CS9A 2J8JA 4R1CA 4BV5A 1URKA 4Z09A 2FEBA 4O03A 3HMTA 1PK2A 1I5KA 4D3CA 4Z0DA 2KNFA 2YILA 2Z8WA 2HPQP 5COEA 2LL4M 4R1BA 3E6PL 2YIPA 1Z40A 2Q8AA 3SRIA 1CEAA 1PKRA 4YIZA 3ZWZA 2J8LA 1GMNA 4HZHA 3HMSA 2Z8VA 2DOHX 5CS1A 1I8NA 1PK4A 1KIVA 1KI0A 2I9AA 5HPGA 3SP8A 1YXEA 5CT3A 2KL5A 2PK4A 1HPKA 4DURA 4BVCA 1PMKA 1A0HA 1NL1A 4YIVA 2HGFA 2Q8BA 3SRJA 1GMOA 5CT2A 4BV7A 5CT1A 5CSQA 3U73A 2I9BA 1NL2A 4UV6A 5I25A 4BVWA 2LL3A 1KRNA 2HPPP 5CS3A 2SPTA 2Y8RA 4UAOA 1NK1A 2X2ZA 1I71A 1TPKA 2F83A 3HMRA 1PMLA 1HPJA 4IUAA 2PF2A 4NZQA 3ZLEA 2PF1A 4Z0FA 4CIKA 4A5TS 5EOKA 2K51A 4R1AA 3NXPA 2YIOA 2DOIA 4Z0EA 2FD6A 2K13X 3MKPA 1B2IA 1W81A 4BVDA 2KJ4A 4APMA 3LAQA 3K65A 4APLA 1GP9A 1KDUA 2L0SA 3BT2A 4BVVA 4KIVA 1HKYA 4R19A 2K4RA 2QJ4A 1CEBA 5EODA 5CP9A 1BHTA 5CS5A
chains in the Genus database with same CATH topology
2QJ2A 1JFNA 3HN4A 1W8KA 3KIVA 3BT1A 5CS9A 2J8JA 4R1CA 4BV5A 1URKA 4Z09A 2FEBA 4O03A 3HMTA 1PK2A 1I5KA 4D3CA 4Z0DA 2KNFA 2YILA 2Z8WA 2HPQP 5COEA 2LL4M 4R1BA 3E6PL 2YIPA 1Z40A 2Q8AA 3SRIA 1CEAA 1PKRA 4YIZA 3ZWZA 2J8LA 1GMNA 4HZHA 3HMSA 2Z8VA 2DOHX 5CS1A 1I8NA 1PK4A 1KIVA 1KI0A 2I9AA 5HPGA 3SP8A 1YXEA 5CT3A 2KL5A 2PK4A 1HPKA 4DURA 4BVCA 1PMKA 1A0HA 1NL1A 4YIVA 2HGFA 2Q8BA 3SRJA 1GMOA 5CT2A 4BV7A 5CT1A 5CSQA 3U73A 2I9BA 1NL2A 4UV6A 5I25A 4BVWA 2LL3A 1KRNA 2HPPP 5CS3A 2SPTA 2Y8RA 4UAOA 1NK1A 2X2ZA 1I71A 1TPKA 2F83A 3HMRA 1PMLA 1HPJA 4IUAA 2PF2A 4NZQA 3ZLEA 2PF1A 4Z0FA 4CIKA 4A5TS 5EOKA 2K51A 4R1AA 3NXPA 2YIOA 2DOIA 4Z0EA 2FD6A 2K13X 3MKPA 1B2IA 1W81A 4BVDA 2KJ4A 4APMA 3LAQA 3K65A 4APLA 1GP9A 1KDUA 2L0SA 3BT2A 4BVVA 4KIVA 1HKYA 4R19A 2K4RA 2QJ4A 1CEBA 5EODA 5CP9A 1BHTA 5CS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJ2 A;  1JFN A;  3HN4 A;  1W8K A;  3KIV A;  3BT1 A;  5CS9 A;  2J8J A;  4R1C A;  4BV5 A;  1URK A;  4Z09 A;  2FEB A;  4O03 A;  3HMT A;  1PK2 A;  1I5K A;  4D3C A;  4Z0D A;  2KNF A;  2YIL A;  2Z8W A;  2HPQ P;  5COE A;  2LL4 M;  4R1B A;  3E6P L;  2YIP A;  1Z40 A;  2Q8A A;  3SRI A;  1CEA A;  1PKR A;  3ZWZ A;  2J8L A;  1GMN A;  4HZH A;  3HMS A;  2Z8V A;  2DOH X;  5CS1 A;  1I8N A;  1PK4 A;  1KIV A;  1KI0 A;  2I9A A;  5HPG A;  3SP8 A;  1YXE A;  5CT3 A;  2PK4 A;  1HPK A;  4DUR A;  4BVC A;  1PMK A;  1A0H A;  1NL1 A;  2HGF A;  2Q8B A;  3SRJ A;  1GMO A;  5CT2 A;  4BV7 A;  5CT1 A;  5CSQ A;  3U73 A;  2I9B A;  1NL2 A;  4UV6 A;  5I25 A;  4BVW A;  2LL3 A;  1KRN A;  2HPP P;  5CS3 A;  2SPT A;  2Y8R A;  4UAO A;  1NK1 A;  2X2Z A;  1I71 A;  1TPK A;  2F83 A;  3HMR A;  1PML A;  1HPJ A;  4IUA A;  2PF2 A;  4NZQ A;  3ZLE A;  2PF1 A;  4Z0F A;  4CIK A;  4A5T S;  5EOK A;  2K51 A;  4R1A A;  3NXP A;  2YIO A;  2DOI A;  4Z0E A;  2FD6 A;  2K13 X;  3MKP A;  1B2I A;  1W81 A;  4BVD A;  2KJ4 A;  4APM A;  3LAQ A;  3K65 A;  4APL A;  1GP9 A;  1KDU A;  2L0S A;  3BT2 A;  4BVV A;  4KIV A;  1HKY A;  4R19 A;  2K4R A;  2QJ4 A;  1CEB A;  5EOD A;  5CP9 A;  1BHT A;  5CS5 A; 
#chains in the Genus database with same CATH topology
 2QJ2 A;  1JFN A;  3HN4 A;  1W8K A;  3KIV A;  3BT1 A;  5CS9 A;  2J8J A;  4R1C A;  4BV5 A;  1URK A;  4Z09 A;  2FEB A;  4O03 A;  3HMT A;  1PK2 A;  1I5K A;  4D3C A;  4Z0D A;  2KNF A;  2YIL A;  2Z8W A;  2HPQ P;  5COE A;  2LL4 M;  4R1B A;  3E6P L;  2YIP A;  1Z40 A;  2Q8A A;  3SRI A;  1CEA A;  1PKR A;  4YIZ A;  3ZWZ A;  2J8L A;  1GMN A;  4HZH A;  3HMS A;  2Z8V A;  2DOH X;  5CS1 A;  1I8N A;  1PK4 A;  1KIV A;  1KI0 A;  2I9A A;  5HPG A;  3SP8 A;  1YXE A;  5CT3 A;  2KL5 A;  2PK4 A;  1HPK A;  4DUR A;  4BVC A;  1PMK A;  1A0H A;  1NL1 A;  4YIV A;  2HGF A;  2Q8B A;  3SRJ A;  1GMO A;  5CT2 A;  4BV7 A;  5CT1 A;  5CSQ A;  3U73 A;  2I9B A;  1NL2 A;  4UV6 A;  5I25 A;  4BVW A;  2LL3 A;  1KRN A;  2HPP P;  5CS3 A;  2SPT A;  2Y8R A;  4UAO A;  1NK1 A;  2X2Z A;  1I71 A;  1TPK A;  2F83 A;  3HMR A;  1PML A;  1HPJ A;  4IUA A;  2PF2 A;  4NZQ A;  3ZLE A;  2PF1 A;  4Z0F A;  4CIK A;  4A5T S;  5EOK A;  2K51 A;  4R1A A;  3NXP A;  2YIO A;  2DOI A;  4Z0E A;  2FD6 A;  2K13 X;  3MKP A;  1B2I A;  1W81 A;  4BVD A;  2KJ4 A;  4APM A;  3LAQ A;  3K65 A;  4APL A;  1GP9 A;  1KDU A;  2L0S A;  3BT2 A;  4BVV A;  4KIV A;  1HKY A;  4R19 A;  2K4R A;  2QJ4 A;  1CEB A;  5EOD A;  5CP9 A;  1BHT A;  5CS5 A; 
#chains in the Genus database with same CATH homology
 2QJ2 A;  1JFN A;  3HN4 A;  1W8K A;  3KIV A;  3BT1 A;  5CS9 A;  2J8J A;  4R1C A;  4BV5 A;  1URK A;  4Z09 A;  2FEB A;  4O03 A;  3HMT A;  1PK2 A;  1I5K A;  4D3C A;  4Z0D A;  2KNF A;  2YIL A;  2Z8W A;  2HPQ P;  5COE A;  2LL4 M;  4R1B A;  3E6P L;  2YIP A;  1Z40 A;  2Q8A A;  3SRI A;  1CEA A;  1PKR A;  4YIZ A;  3ZWZ A;  2J8L A;  1GMN A;  4HZH A;  3HMS A;  2Z8V A;  2DOH X;  5CS1 A;  1I8N A;  1PK4 A;  1KIV A;  1KI0 A;  2I9A A;  5HPG A;  3SP8 A;  1YXE A;  5CT3 A;  2KL5 A;  2PK4 A;  1HPK A;  4DUR A;  4BVC A;  1PMK A;  1A0H A;  1NL1 A;  4YIV A;  2HGF A;  2Q8B A;  3SRJ A;  1GMO A;  5CT2 A;  4BV7 A;  5CT1 A;  5CSQ A;  3U73 A;  2I9B A;  1NL2 A;  4UV6 A;  5I25 A;  4BVW A;  2LL3 A;  1KRN A;  2HPP P;  5CS3 A;  2SPT A;  2Y8R A;  4UAO A;  1NK1 A;  2X2Z A;  1I71 A;  1TPK A;  2F83 A;  3HMR A;  1PML A;  1HPJ A;  4IUA A;  2PF2 A;  4NZQ A;  3ZLE A;  2PF1 A;  4Z0F A;  4CIK A;  4A5T S;  5EOK A;  2K51 A;  4R1A A;  3NXP A;  2YIO A;  2DOI A;  4Z0E A;  2FD6 A;  2K13 X;  3MKP A;  1B2I A;  1W81 A;  4BVD A;  2KJ4 A;  4APM A;  3LAQ A;  3K65 A;  4APL A;  1GP9 A;  1KDU A;  2L0S A;  3BT2 A;  4BVV A;  4KIV A;  1HKY A;  4R19 A;  2K4R A;  2QJ4 A;  1CEB A;  5EOD A;  5CP9 A;  1BHT A;  5CS5 A; 
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