The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
47
|
sequence length |
145
|
structure length |
145
|
Chain Sequence |
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Protein structural ensembles are revealed by redefining X-ray electron density noise.
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| source organism |
Human immunodeficiency virus type 1
|
| molecule keywords |
Gag-Pol polyprotein
|
| total genus |
47
|
| structure length |
145
|
| sequence length |
145
|
| ec nomenclature |
ec
2.7.7.49: RNA-directed DNA polymerase. |
| pdb deposition date | 2013-12-08 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein |
#chains in the Genus database with same CATH superfamily 2GOL B; 4XFX A; 4INB A; 2X83 A; 1M9C C; 2LF4 A; 4NX4 C; 2M8N A; 3NTE A; 4J93 A; 2KGF A; 4XRQ A; 5HGK A; 1GWP A; 5HGO A; 2V4X A; 2WLV B; 3BP9 A; 2XGV A; 4PH0 A; 4DGE C; 1EIA A; 1EM9 A; 4U0D A; 3MGE A; 4XFY A; 2Y4Z A; 4WYM A; 5HGM A; 1M9E C; 1G03 A; 1L6N A; 3H4E A; 2XGY A; 4U0C A; 2X82 A; 3H47 A; 4QNB A; 1P7N A; 1U7K A; 4U0E A; 4XFZ A; 1E6J P; 1M9F C; 4PH3 A; 2GON A; 4HTW A; 1M9Y C; 5HGL A; 4E92 A; 2M8L A; 2JPR A; 2EIA A; 2X2D D; 1AFV A; 4DGA C; 2PXR C; 2WLV A; 4U0B A; 4XRO A; 4LQW C; 1D1D A; 4B4N A; 2XGU A; 1M9D C; 4PH2 A; 1M9X C; 2M8P A; 1QRJ A; 4E91 A; 1AK4 C; 4U0A A; 5HGN A; 2PWM A; 2PWO A; 3P05 A; 2XDE A; 4U0F A; 5JPA A; #chains in the Genus database with same CATH topology 2GOL B; 4XFX A; 4INB A; 2X83 A; 1M9C C; 2LF4 A; 4NX4 C; 2M8N A; 3NTE A; 4J93 A; 2KGF A; 4XRQ A; 5HGK A; 1GWP A; 5HGO A; 2V4X A; 2WLV B; 3BP9 A; 2XGV A; 4PH0 A; 4DGE C; 1EIA A; 1EM9 A; 4U0D A; 3MGE A; 4XFY A; 2Y4Z A; 4WYM A; 5HGM A; 1M9E C; 1G03 A; 1L6N A; 3H4E A; 2XGY A; 4U0C A; 2X82 A; 3H47 A; 4QNB A; 1P7N A; 1U7K A; 4U0E A; 4XFZ A; 1E6J P; 1M9F C; 4PH3 A; 2GON A; 4HTW A; 1M9Y C; 5HGL A; 4E92 A; 2M8L A; 2JPR A; 2EIA A; 2X2D D; 1AFV A; 4DGA C; 2PXR C; 2WLV A; 4U0B A; 4XRO A; 4LQW C; 1D1D A; 4B4N A; 2XGU A; 1M9D C; 4PH2 A; 1M9X C; 2M8P A; 1QRJ A; 4E91 A; 1AK4 C; 4U0A A; 5HGN A; 2PWM A; 2PWO A; 3P05 A; 2XDE A; 4U0F A; 5JPA A; #chains in the Genus database with same CATH homology 2GOL B; 4XFX A; 4INB A; 2X83 A; 1M9C C; 2LF4 A; 4NX4 C; 2M8N A; 3NTE A; 4J93 A; 2KGF A; 4XRQ A; 5HGK A; 1GWP A; 5HGO A; 2V4X A; 2WLV B; 3BP9 A; 2XGV A; 4PH0 A; 4DGE C; 1EIA A; 1EM9 A; 4U0D A; 3MGE A; 4XFY A; 2Y4Z A; 4WYM A; 5HGM A; 1M9E C; 1G03 A; 1L6N A; 3H4E A; 2XGY A; 4U0C A; 2X82 A; 3H47 A; 4QNB A; 1P7N A; 1U7K A; 4U0E A; 4XFZ A; 1E6J P; 1M9F C; 4PH3 A; 2GON A; 4HTW A; 1M9Y C; 5HGL A; 4E92 A; 2M8L A; 2JPR A; 2EIA A; 2X2D D; 1AFV A; 4DGA C; 2PXR C; 2WLV A; 4U0B A; 4XRO A; 4LQW C; 1D1D A; 4B4N A; 2XGU A; 1M9D C; 4PH2 A; 1M9X C; 2M8P A; 1QRJ A; 4E91 A; 1AK4 C; 4U0A A; 5HGN A; 2PWM A; 2PWO A; 3P05 A; 2XDE A; 4U0F A; 5JPA A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
